mRNA_Ecto-sp13_S_contig1553.4114.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1553.4114.1
Unique NamemRNA_Ecto-sp13_S_contig1553.4114.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: D8LRU4_ECTSI (MND1 family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU4_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 3.900e-127
Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 1
Query:  385 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQN+VD+LEQSIAKAEDNTAANKRK SELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKV RLTQVCKDGVNRWTDNSWCIKSWMVKTKGM GKDVDRYLQIKGDFD V
Sbjct:    1 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTAANKRKFSELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVARLTQVCKDGVNRWTDNSWCIKSWMVKTKGMSGKDVDRYLQIKGDFDLV 202          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: F5BX17_UNDPI (Meiotic nuclear division protein 1 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=F5BX17_UNDPI)

HSP 1 Score: 295 bits (754), Expect = 1.550e-94
Identity = 149/202 (73.76%), Postives = 172/202 (85.15%), Query Frame = 1
Query:  385 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            MVK+GLS+EEKR K+L+IYH TK+I+SLKEIEKAASKQGV   T+KDVNQSLVDDGLVDMDKIG SNFFWSFPSK  V +QNL+DSL++ IAKAED  A NKRKI+ L E RADT  R+ KL RLQ+N  R+++LE EYE+LKENDPAELEKVT + +VCKDGVNRWTDN+W IKSWMVKT+GM G DVD+YLQIK DFD V
Sbjct:    1 MVKKGLSLEEKRAKILNIYHGTKSIFSLKEIEKAASKQGVVSQTIKDVNQSLVDDGLVDMDKIGPSNFFWSFPSKAVVDRQNLIDSLKRDIAKAEDTAAVNKRKIASLVEERADTEERQLKLRRLQDNKQRVKQLESEYETLKENDPAELEKVTNVAEVCKDGVNRWTDNTWSIKSWMVKTRGMSGADVDKYLQIKADFDHV 202          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: A0A7S2XYC3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYC3_9STRA)

HSP 1 Score: 208 bits (529), Expect = 7.250e-61
Identity = 107/201 (53.23%), Postives = 146/201 (72.64%), Query Frame = 1
Query:  391 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEE-GRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            ++GLS+EEKR ++L IYHS+  +Y+LKEIEK ASK GV + T+KDVNQSL+DD LVD DKIG++NFFWSFPSKV V K+  ++SL++ I  ++    A + K+++LE  GR D+ +RRE L +L +   R  EL++  + LKENDP EL ++  L +  K+ VNRWTDN W +KSW VK KGM  KDVDRY+Q+  DFD +
Sbjct:    5 RKGLSLEEKRQRILGIYHSSGEVYNLKEIEKIASKAGVVLQTIKDVNQSLIDDHLVDADKIGSANFFWSFPSKVYVVKKTKIESLQKQIEDSKRQLNAAQDKVADLENAGRQDSNTRREGLAKLDQERKRGSELDERLQCLKENDPEELLRLKNLQEEIKEHVNRWTDNIWAVKSWCVKKKGMPSKDVDRYMQLPQDFDYI 205          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: H3HEE5_PHYRM (Uncharacterized protein n=24 Tax=Phytophthora TaxID=4783 RepID=H3HEE5_PHYRM)

HSP 1 Score: 186 bits (473), Expect = 1.190e-52
Identity = 94/202 (46.53%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  385 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            M ++G+S++EKR+++L IYH +K +++LKE+EK  SK GV + TVKDVNQ+LVDD LVD DKIG+ N+FWSFPSK++ T++  +  LEQ    A+D     K+ + + +  R ++  R +KL RL+E   ++Q L  + + L ENDP  LE++ R  ++ K+G +RWTDN + +KSW+VK +G+ GK+VD++L IK DFD V
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDVLVDCDKIGSGNYFWSFPSKLSQTRRRKLSELEQRHQTAQDKLVKVKQNVEKQKGLRPESEERVQKLRRLEEQKAKVQVLRTKVQHLAENDPEILEQLERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYV 202          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: A0A0P1AFA8_PLAHL (Protein involved in meiotic recombination/predicted coiled-coil protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFA8_PLAHL)

HSP 1 Score: 183 bits (464), Expect = 2.490e-51
Identity = 92/202 (45.54%), Postives = 142/202 (70.30%), Query Frame = 1
Query:  385 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            M ++G+S++EKR+++L IYH +K +++LKE+EK  SK GV + TVKDVNQ+LVDD LVD DKIG+ N+FWSFPSK++ +++  +  LEQ     ++     K KI E +  R+D+  R +KL RL+E  ++++ L    + L ENDPA LE +     + K+G +RWTDN + +KSW+VK +G+ GK+V+++L+I+ DFD V
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQCRQARQEKLDRVKEKIEEQQALRSDSDERIQKLKRLEELKVKVESLRNTMQHLAENDPAILEDLECKVGIAKEGADRWTDNVFTLKSWVVKKRGVEGKEVNKWLEIQDDFDYV 202          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: A0A7S3XLC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC7_HETAK)

HSP 1 Score: 179 bits (453), Expect = 4.510e-50
Identity = 93/200 (46.50%), Postives = 123/200 (61.50%), Query Frame = 1
Query:  391 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            ++G+S EEKR ++L IYH  K + +LKE+EK   KQGV + ++K+VNQ+LVDD LVD DKIG++NFFWSFPSKVA                              L  GR DT  RR +L +LQ+   R   L++  ++LKENDP EL ++   T+ CK+  NRWTDN W +KSW +K KGM   +VDRYLQ+  DFD V
Sbjct:    5 RKGVSYEEKRTRILGIYHEKKEVLNLKELEKLGVKQGVVVQSIKEVNQALVDDNLVDTDKIGSANFFWSFPSKVAEL----------------------------LGAGRHDTPQRRAQLQKLQDEKAREAALDQRLDTLKENDPRELARIETETEKCKEAANRWTDNIWALKSWCIKKKGMASTEVDRYLQLSSDFDYV 176          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: W7TRE1_9STRA (Meiotic nuclear division protein 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRE1_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.170e-48
Identity = 93/201 (46.27%), Postives = 137/201 (68.16%), Query Frame = 1
Query:  391 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQEN-GLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            ++G+S+EEKR  +L IYHST A+YSLKE+E  ASKQGV   +VKDVNQ LVDDGLV+M+K+GASN F++FP K   +K+    +LE  +A+ + + +  + K + L  GR D+  RR+ +   +    L+ ++LE E +  K+NDP ++E++     +CK GVNRWTDN + IKS++VK +GM  KDVD++L +   FD V
Sbjct:    4 RKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLE-EVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYV 203          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: A0A5D6Y0R0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0R0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.040e-48
Identity = 88/200 (44.00%), Postives = 136/200 (68.00%), Query Frame = 1
Query:  391 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            ++G+S+EEKR ++L IYH +K +++LKE+EK  +K GV + T+KDVNQ+LVDDGLVD DKIG+ N+FWSFPSK++  ++  +  LEQ  A A+D  A  ++ I E +  R ++  R  KL RL E    +++L+ + + L +NDP  L ++ R  QV K G +RWTDN + ++SW+ + +G    +VD++L IK DFD +
Sbjct:    4 RKGVSLEEKRARILHIYHDSKDVFNLKEVEKIGAKAGVVLQTIKDVNQALVDDGLVDCDKIGSGNYFWSFPSKLSQARKRKLGELEQRKAAAQDKLAKVRQSIDEQKSKRTESDDRAAKLQRLAELQASVKDLKAKVQHLADNDPEILAQLERSVQVAKIGADRWTDNVFTMRSWVAQKRGCASSEVDKWLGIKDDFDYI 203          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: A0A4D9D7I4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7I4_9STRA)

HSP 1 Score: 176 bits (447), Expect = 9.850e-48
Identity = 97/205 (47.32%), Postives = 139/205 (67.80%), Query Frame = 1
Query:  382 TMVKR-GLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQEN-GLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            TM KR G+S+EEKR  +L IYHST A+YSLKE+E  ASKQGV   +VKDVNQ LVDDGLV+M+K+GASN F++FP K   +K+    +LE  +A+ + + +  + K + L  GR D+  RR+ +   +    L+ ++LE E +  K+NDP ++E++     +CK GVNRWTDN + IKS++VK +GM  KDVD++L +   FD V
Sbjct:   86 TMPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSTGRQDSEKRRQNMEDYETALALKTKQLE-EVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYV 289          
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Match: A0A8K1FKH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKH2_PYTOL)

HSP 1 Score: 173 bits (438), Expect = 1.680e-47
Identity = 87/200 (43.50%), Postives = 135/200 (67.50%), Query Frame = 1
Query:  391 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAANKRKISELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFDQV 990
            K+G+S+EEKR+++L IYH +K +Y++KEIEK  +K GV + T+KDVNQ+LVDD LVD DKIG+ N+FWSFPSKV+  ++  +  LEQ      +  +  K+++ + +  R D+  R  KL RL E    +++++ + + L +NDPA LE + R  QV K G +RWTDN + ++SW+ + +G    +VD++L IK DFD +
Sbjct:    5 KKGVSLEEKRERILKIYHESKDVYNIKEIEKLGAKAGVVLQTIKDVNQALVDDALVDFDKIGSGNYFWSFPSKVSQQRKRKLSELEQRKQSTSEQLSKVKQEVEKQKSLRTDSDDRVAKLQRLAELQTHVKDMKAKIQHLADNDPAILEHLERNMQVAKVGADRWTDNVYTVRSWVAQKRGCSTGEVDKWLGIKDDFDYI 204          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1553.4114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU4_ECTSI3.900e-12797.03MND1 family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
F5BX17_UNDPI1.550e-9473.76Meiotic nuclear division protein 1 n=1 Tax=Undaria... [more]
A0A7S2XYC3_9STRA7.250e-6153.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3HEE5_PHYRM1.190e-5246.53Uncharacterized protein n=24 Tax=Phytophthora TaxI... [more]
A0A0P1AFA8_PLAHL2.490e-5145.54Protein involved in meiotic recombination/predicte... [more]
A0A7S3XLC7_HETAK4.510e-5046.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TRE1_9STRA2.170e-4846.27Meiotic nuclear division protein 1 n=2 Tax=Nannoch... [more]
A0A5D6Y0R0_9STRA3.040e-4844.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A4D9D7I4_9STRA9.850e-4847.32Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8K1FKH2_PYTOL1.680e-4743.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1553contigEcto-sp13_S_contig1553:1209..5525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score381.7
Seed ortholog evalue2.1e-103
Seed eggNOG ortholog2880.D8LRU4
Preferred nameMND1
Model size1558
KEGG koko:K11997,ko:K22381
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009553,GO:0009555,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048229,GO:0048285,GO:0048856,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Exons6
EggNOG free text desc.homologous recombination
EggNOG OGsCOG5124@1,KOG3433@2759
Ec32 ortholog descriptionMND1 family
Ec32 orthologEc-08_002470.1
EC2.3.2.27
Cds size609
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1553.4114.1prot_Ecto-sp13_S_contig1553.4114.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1553 1774..4062 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.5467157-UTR-Ecto-sp13_S_contig1553:1208..17731681462823.5467157-UTR-Ecto-sp13_S_contig1553:1208..1773Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1553 1209..1773 -
1681462823.6098933-UTR-Ecto-sp13_S_contig1553:4062..40861681462823.6098933-UTR-Ecto-sp13_S_contig1553:4062..4086Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1553 4063..4086 -
1681462823.62005-UTR-Ecto-sp13_S_contig1553:5165..55251681462823.62005-UTR-Ecto-sp13_S_contig1553:5165..5525Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1553 5166..5525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.5600595-CDS-Ecto-sp13_S_contig1553:1773..19081681462823.5600595-CDS-Ecto-sp13_S_contig1553:1773..1908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1553 1774..1908 -
1681462823.5700884-CDS-Ecto-sp13_S_contig1553:2535..26171681462823.5700884-CDS-Ecto-sp13_S_contig1553:2535..2617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1553 2536..2617 -
1681462823.5798037-CDS-Ecto-sp13_S_contig1553:2985..30981681462823.5798037-CDS-Ecto-sp13_S_contig1553:2985..3098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1553 2986..3098 -
1681462823.5897567-CDS-Ecto-sp13_S_contig1553:3437..35781681462823.5897567-CDS-Ecto-sp13_S_contig1553:3437..3578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1553 3438..3578 -
1681462823.5997458-CDS-Ecto-sp13_S_contig1553:3924..40621681462823.5997458-CDS-Ecto-sp13_S_contig1553:3924..4062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1553 3925..4062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1553.4114.1

>prot_Ecto-sp13_S_contig1553.4114.1 ID=prot_Ecto-sp13_S_contig1553.4114.1|Name=mRNA_Ecto-sp13_S_contig1553.4114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQ
SLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNLVDSLEQSIAKAEDNTAA
NKRKISELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAEL
EKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMGGKDVDRYLQIKGDFD
QV*
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mRNA from alignment at Ecto-sp13_S_contig1553:1209..5525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1553.4114.1 ID=mRNA_Ecto-sp13_S_contig1553.4114.1|Name=mRNA_Ecto-sp13_S_contig1553.4114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1553:1209..5525- (Ectocarpus species13 EcNAP12_S_4_19m)
AATCCGTGTGCCTCCTCGCTTGTCCCGCGGGTCTGGTCGTGGTGCTGCGC TGCAACAATGCATGGCAATCACCATTGACCACACCATTGGCACTCACAAA GCCATCGACTGCACCAGCACTATAGTACGCACGATCACCCAGAGATATTC GCTGTTGGTATCTGGGTATCTGTGGATACGGAAGCAGCAGCTTGAGCAGG GCAAAGAGCGGGCCGTAGTTTCTGTCGTGCGGCCTGTCTTTCTTTGGGCC TCCTACTACTACTGCTGCAGGTCCTCAGTGCTTTCTCTCTCTGCCTCCAC TTCCTCTATCTGCACTTCCATCACATACACCTGTGGAATTGAAGCACACA TCGGGATAAGGTGGGCGTGTGTTTGCTTTTGGATGAAAGAAAAGTTTGTA CAAACTCAGCAGTATAGAAATGGGACAAGTACTTCGAAGTAGGAAACTGC TGTCCTGGCAGACGTAACAACTAAATGACTGCTGTTGCGACAGACACACA CACAACCGTACCACCATGATCCCATCGAGAGAGCACCATATCATGTCACA ACGAAGCAATATCTCGACAGCGCCAGGCATGTGTACTCAGCGACTTTAAG AGGGGGATTCACCACCTTCGATTGAGGAGTGTCGGCAGTGTCAGATTCAA TTTCAAAAATTCAAAAAAGTTTGAAAATCAAGGAGGAACCAGAATTTTCG TTCAAGCTCGTTTCCACCTCTGTTGTACGACAAATCACCGCTCCAGGAGT ATGAACATCACGTGGAACATGTTTCAGCGAAACCAACAAAGGTAATCCAG CTTATTCGTAGCGAATTTGCGCTTGTGTTTTTAGCCTTCACCCGCACAAT ACCACACACGACGACCGATGGACTTAACTTTATCTCTAACTCCAGCTCGT CAATCATAAAACTTCTTGATAGATGATGGTAACATCAACATTTTACACTA GTGTTTCAGGATTTGATGTGTAGGCGGAACAGAGAAGAGAATGGTTCCTT CTAGAAGACGCGGGGAGTATAACTCCCCGCGGAAGGATAAAACAGGGGAT AGGATCTTAGTAGCTCCTCCGTGAGCAGAGGATCCTGGCCCCCTCGATGT CAGAGCTATCGCTACCCAAGGCATCAGCTACTGCTGCTACTGCTGTTCCA CAAGAGTTAACAACAAGAGAGTTTTTCTACACGGGCTTCCCAGATAGCAC CACGCGTGCGTACCACTACACTTGGCGTCGTCGGCAGGACACAGGGCTAG AGAGGTATTCACACTTTTTGTCCAAAGCACTCGATGCATATGTTTGCAGT TTATGCATCGGTACGTTGGGTCTGTGGACCTGCTTCCACGCTGGTTTGAT GCTTTCATGTCTCCGCAATTCAGAATATGTTCTCAATCCTTGTGTGTCGG GTGTTTTTTTGTTTGCCCCGAACGTTGAAACGAGAACAGGGTTGCAAAAT TTTGGACAGAACAATGGTAAAGAGGGGGCTTTCTGTGGAGGAGAAACGGG ACAAGGTACTCGACATTTACCACTCTACCAAGGCCATCTACAGCCTCAAG GAAATAGAGAAAGCAGCATCGAAGCAAGGAGTGACGATCAACACGGTCAA GGTACGAATGTCAAAGCAGCGGCGCAGAAGCATCGGCAACAGCCCCGATG AAGACGACCTCGACATTGAAGCACTGCGACGAAAAGTTGCAGCTCATGAC TTTTCACGCACATCGCAGTAGCAATCAATGTCACACTGAAGGTGGGGTTT TCCCGGAGGCACCCCCACACGTGTTTGTTGTGACTCCGGGACATTTGCGG AAATCGCGTGAAACTGTTTTGTTCCCTGTGTTGGCCTCGCCCTTGTCCGA TGACTCCGAACTATCCGGTGACGCGCAAACTTGTCGATGGAACGACTCAC GCATACAATCGTCTTTTTTGTCCTTCTCCCAACATCACCCGCCACAGGAC GTGAACCAATCTCTAGTGGACGATGGCCTCGTGGATATGGACAAGATCGG CGCTTCGAACTTTTTTTGGTCATTTCCTTCCAAAGTGGCGGTCACCAAAC AAAATTTAGTCGACAGCCTTGAGCAAAGCATCGCCAAGGTATGTACCACT CCTGGCCGGATGCGCCATACTGCTCTTCGAGGATCTTGCGCATACTACAT TTGGGAGTCTTTCAAGCTGCAAGGAATGCGCTACGTGTACATCTACGTAG TCCATAATGGTTGCTTGAGTCGTCCGATGTGCTCGTGTACACCACGGTCC GTTGTACCGGTTCGTACAATCGGCAGGTCGGTTTCTGTCGCCCGATGCCG ACCAGCTATTGCATGGTTCATTCTACTGGCGATGTGTAGAGGTGGCGGTA CCTTGTTGGAATCATCAGTTGCACCCTGCACCCTTGTTTTCGCTTCGCTA CAACACACTGCCGTGCTTTTGTGTAAGGCCGAAGACAACACAGCAGCCAA CAAGCGAAAGATTTCGGAGCTTGAAGAAGGTCGTGCGGACACAGCAAGCC GAAGAGAGAAGCTTGGACGTTTGCAGGAGAACGGCCTACGGTGAGGTTGG CAAGCAATACCCCCGCAACTGCACGATCAACTAGCTGTGCGTTCAGGTTG AGGGCCGCTTGATTGTGAGTTTGTGTACAACCTCGTGGTACCGCAACCGT TATGCTGTCAGAGACCATTAGCGTGTACGTGGTGCATGTTTTCCCCCAGT GTCAGATATTTTTACTCTAGGCAGCCATGTCTATGCTTGCGTCCTTGTGG TGGTTGTGGTAATGAAATTGTAGTAATTCAAGAAGTATTTCACGTTTACC CGCCTGGGCAGTTCCGGTAAGTGCGTACAACTGATGTTTTCTGCCGATCC TGCCGCTCGCCGAATGTTTGAACCTTGTCGCTTACTGCATGTTTGCTTTT TGGTACAGATTGCAGGAGCTGGAGAAGGAGTATGAATCACTCAAAGAAAA TGACCCTGCAGAGCTGGAGAAGGTCACCCGTCTGACACAGGTGAGCAGTT GCGTTGAATCAGGTTCACCGGACATAGATTGCGCCGCGCGGTGTACCCAT ATGTATGTCGTTTTGGCATGGTATACTTGTAGCGCCTTCCCGGAACAAAC GCTCTCTCCGCGGGAAATACTGGCTGTCGGTGCCTCCCTCTCCTCGGTGT CTAATTTTTCCCGTGCTTAAGTTTATTTGTTCTACGGATGCCACACTGCG GTAGAGCCTGTGAAACTGTGGAACTGTTCTGCATTGACGTTGGCATAAAG GACAAGCACGCGGAAGCACTAGTCTGAGATCACATTGGATTTTGTAACCA AGACAGAAACTAATATTTATTAAACAATCCGACACGACCACCACCACGAC AAACTCGCCTTAAGTCAGTGCTTTTCTCTCGGTGAATGACAACATTCAAA CCCGAAGACTCAGCTGGCTCGTGTGTGTCCCGAGCGCGCGCCTGTGGTTT CGCCTTCCCTTCGCTGACACCGTGTTTCTTGACTACCTTCGAGTTCGAAG CCCTGCGTCCGTTACAAAACCAAATGTCTGCTTAGCTTGTTGTTTCACCC ATCCACCCATGCATCTTTTGAGAGTCGTGCGCTGCTAAAAATGTTTTGCC CGAATCATCGTGGGTAGGTTTGCAAGGACGGAGTCAATCGCTGGACAGAC AATTCGTGGTGCATCAAGAGCTGGATGGTGAAGACGAAGGGAATGGGTGG GAAAGACGTGGACAGATATCTGCAAATCAAGGGGGACTTTGACCAAGTTT GAGTTTTTCGATTGTACCCCGTCGGGCGAACCAGATACTACGCGGTCCCT GGTTTTTGTGTCTCGTCCGGTGCGTATGCATCCGTCCGTGGTGGGAGCTT GGCCAAGAGTGCGCGAGCCAGCTTCATGTGCAGCGAAGTAGGGTGCGGGC GAGAGGCTCTTTGTAGATTGGTGATGGCTCTCCCTGCCGCTGCCCATTTC AGTGTGCTCCCACCTGTAGCACTAGTAGCAGTCAGCGAAAGCGAACACGT GCGATTGGACTACTTGAAAATGTATACAAAAGGTGATAGTCTTGTGAGCT CACACATACATATATATTGGACAGTAGAAAAAAGGGCGTCCGAACACCTC CGTTATTTCAAGAATGAGTACGTGACATTGCCATCGCTTATGTTATGTAT GAACACAACTTTTAAAGAAGCCCGAATCAAACAAGTGGACTAGTGAGCGA CTTGATGTATCGGCTTCTGCAAAACTTAATCGTGGGGTTCGAGACCTGGA CACTTGGTGGCTTTTTTAGTGAGACCTTGATACTCGTGGCGAGAGAACCG GGCGACGGCAAGACTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1553:1209..5525-

>mRNA_Ecto-sp13_S_contig1553.4114.1 ID=mRNA_Ecto-sp13_S_contig1553.4114.1|Name=mRNA_Ecto-sp13_S_contig1553.4114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1553:1209..5525- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAAAGAGGGGGCTTTCTGTGGAGGAGAAACGGGACAAGGTACTCGA
CATTTACCACTCTACCAAGGCCATCTACAGCCTCAAGGAAATAGAGAAAG
CAGCATCGAAGCAAGGAGTGACGATCAACACGGTCAAGGACGTGAACCAA
TCTCTAGTGGACGATGGCCTCGTGGATATGGACAAGATCGGCGCTTCGAA
CTTTTTTTGGTCATTTCCTTCCAAAGTGGCGGTCACCAAACAAAATTTAG
TCGACAGCCTTGAGCAAAGCATCGCCAAGGCCGAAGACAACACAGCAGCC
AACAAGCGAAAGATTTCGGAGCTTGAAGAAGGTCGTGCGGACACAGCAAG
CCGAAGAGAGAAGCTTGGACGTTTGCAGGAGAACGGCCTACGATTGCAGG
AGCTGGAGAAGGAGTATGAATCACTCAAAGAAAATGACCCTGCAGAGCTG
GAGAAGGTCACCCGTCTGACACAGGTTTGCAAGGACGGAGTCAATCGCTG
GACAGACAATTCGTGGTGCATCAAGAGCTGGATGGTGAAGACGAAGGGAA
TGGGTGGGAAAGACGTGGACAGATATCTGCAAATCAAGGGGGACTTTGAC
CAAGTTTGA
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