mRNA_Ecto-sp13_S_contig15522.4111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15522.4111.1
Unique NamemRNA_Ecto-sp13_S_contig15522.4111.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: D8LTC1_ECTSI (Nucleolar GTP-binding protein 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTC1_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 5.120e-80
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 2 
Query:  518 VCKVAPVPGETKVWQYIALMRRIFIVDCPGVVYDDGDDEIEIVLKGVVRAEKLPDPTDFVPAILSRVKEEYVRRLYGVAAWEDATDFMTKLAARSGRLLAGGEPDFHSVAVNIINDYQRGKLPYFVAP 901
            VCKVAPVPGETKVWQYIALMRRIFIVDCPGVVYDDGDDEIEIVLKGVVRAEKLPDPTDFVPAILSRVKEEYVRRLYGVAAWEDATDFMTKLAARSGRLLAGGEPDFHSVAVNIINDYQRGKLPYFVAP
Sbjct:  289 VCKVAPVPGETKVWQYIALMRRIFIVDCPGVVYDDGDDEIEIVLKGVVRAEKLPDPTDFVPAILSRVKEEYVRRLYGVAAWEDATDFMTKLAARSGRLLAGGEPDFHSVAVNIINDYQRGKLPYFVAP 416
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: A0A6U1NL74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NL74_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.410e-75
Identity = 119/155 (76.77%), Postives = 133/155 (85.81%), Query Frame = 1 
Query:   37 DTNAPKAWEERGLKRAELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            D+N     + R  KR  LFEKGQS+RIW+ELYKVLDCSDVVIQVLDARNVPGTRC  +E HLKKNA+HKH +FV+NK DLVP+WV + WV+ LS T PTLAFHASITNSFGKGA+INLLRQFAKLH DKK ISVGV+GYPNVGKSS+INTLKKKK
Sbjct:   35 DSNLQVEEDFREEKRHSLFEKGQSKRIWSELYKVLDCSDVVIQVLDARNVPGTRCQRIEAHLKKNAAHKHFLFVLNKCDLVPSWVVRGWVRELSKTTPTLAFHASITNSFGKGAVINLLRQFAKLHQDKKNISVGVIGYPNVGKSSLINTLKKKK 189
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: W7U800_9STRA (Nucleolar GTP-binding protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U800_9STRA)

HSP 1 Score: 250 bits (639), Expect = 9.840e-75
Identity = 117/142 (82.39%), Postives = 131/142 (92.25%), Query Frame = 1 
Query:   76 KRAELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            +R +LF+KGQSRRIW ELYKV+DCSDVVIQVLDARN+PGTRC HLERHLKKNASHKHLI ++NK DLVP WV ++WV+LLS  +PTLAFHASITN+FGKG+LINLLRQ+AKLH DKKQISVGVVGYPNVGKSSIINTLK KK
Sbjct:  212 RRHDLFDKGQSRRIWGELYKVIDCSDVVIQVLDARNIPGTRCAHLERHLKKNASHKHLILIVNKCDLVPAWVVRRWVRLLSQHYPTLAFHASITNAFGKGSLINLLRQYAKLHQDKKQISVGVVGYPNVGKSSIINTLKSKK 353
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: A0A8K1C6Q5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6Q5_PYTOL)

HSP 1 Score: 244 bits (623), Expect = 9.500e-74
Identity = 114/139 (82.01%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:   85 ELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            ++F KGQSRRIW ELYKVLDCSDVVIQVLDARNVPGTRC H+E H++KNA+HKHLIFVINK DLVP WVTKKWV+ LS T PTLAFHAS+ N+FGKGALINLLRQFAKLH DKKQISVG++GYPNVGKSS+IN L+KKK
Sbjct:  199 DVFSKGQSRRIWGELYKVLDCSDVVIQVLDARNVPGTRCEHVENHIRKNAAHKHLIFVINKCDLVPNWVTKKWVQKLSETTPTLAFHASLNNAFGKGALINLLRQFAKLHQDKKQISVGLIGYPNVGKSSVINALRKKK 337
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: K3WX25_GLOUD (Nucleolar GTP-binding protein 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX25_GLOUD)

HSP 1 Score: 243 bits (619), Expect = 4.320e-73
Identity = 113/139 (81.29%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:   85 ELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            ++F KGQS+RIW ELYKVLDCSDVVIQVLDARNVPGTRC H+E+H+KKNA+HKHLIFVINK DLVP WVTKKWV+ LS T PTLAFHAS+ N FGKGALINLLRQFAKLH DKKQISVG++GYPNVGKSS+IN L+KK+
Sbjct:  196 DVFNKGQSKRIWGELYKVLDCSDVVIQVLDARNVPGTRCEHVEKHIKKNAAHKHLIFVINKCDLVPNWVTKKWVQKLSETTPTLAFHASMNNPFGKGALINLLRQFAKLHQDKKQISVGLIGYPNVGKSSVINALRKKR 334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: D0NUW0_PHYIT (Nucleolar GTP-binding protein 2 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NUW0_PHYIT)

HSP 1 Score: 241 bits (615), Expect = 4.320e-73
Identity = 112/139 (80.58%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:   85 ELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            ++F KGQS+RIW ELYKVLDCSDVVIQVLDARNVPGTRC H+E+H++KNASHKHLIFVINK DLVP WVTK+WV+ LS   PTLAFHAS+TN FGKGALINLLRQFAKLH +KKQISVG++GYPNVGKSS+IN L+KKK
Sbjct:  196 DVFNKGQSKRIWGELYKVLDCSDVVIQVLDARNVPGTRCEHVEKHIRKNASHKHLIFVINKCDLVPNWVTKRWVQKLSEATPTLAFHASMTNPFGKGALINLLRQFAKLHQEKKQISVGLIGYPNVGKSSVINALRKKK 334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: M4BSB5_HYAAE (Nucleolar GTP-binding protein 2 n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BSB5_HYAAE)

HSP 1 Score: 241 bits (616), Expect = 9.470e-73
Identity = 112/139 (80.58%), Postives = 128/139 (92.09%), Query Frame = 1 
Query:   85 ELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            ++F KGQS+RIW ELYKVLDCSDVVIQVLDARNVPGTRC H+E+H++KNASHKHLIFVINK DLVP WVTK+WV+ LS T PTLAFHAS++N FGKGALINLLRQFAKLH +KKQISVG++GYPNVGKSS+IN L+KKK
Sbjct:  196 DVFNKGQSKRIWGELYKVLDCSDVVIQVLDARNVPGTRCEHVEKHIRKNASHKHLIFVINKCDLVPNWVTKRWVQKLSETTPTLAFHASMSNPFGKGALINLLRQFAKLHQEKKQISVGLIGYPNVGKSSVINALRKKK 334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: A0A5D6XVC1_9STRA (Nucleolar GTP-binding protein 2 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVC1_9STRA)

HSP 1 Score: 241 bits (616), Expect = 1.360e-72
Identity = 112/139 (80.58%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:   85 ELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            ++F KGQS+RIW ELYKVLDCSDVVIQVLDARNVPGTRC H+E+H++KNA+HKHLIFVINK DLVP WVTKKWV+ LS T PTLAFHAS+ N FGKGALINLLRQFAKLH DKKQISVG++GYPNVGKSS+IN L+KK+
Sbjct:  196 DVFSKGQSKRIWGELYKVLDCSDVVIQVLDARNVPGTRCEHVEKHIRKNAAHKHLIFVINKCDLVPNWVTKKWVQKLSETTPTLAFHASMNNPFGKGALINLLRQFAKLHQDKKQISVGLIGYPNVGKSSVINALRKKR 334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: A0A0P1B5V0_PLAHL (Nucleolar GTP-binding protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5V0_PLAHL)

HSP 1 Score: 238 bits (607), Expect = 2.060e-71
Identity = 110/139 (79.14%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:   85 ELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            ++F KGQS+RIW ELYKVLDCSDVVIQVLDARNVPGTRC H+E+H++KNA+HKHLIFVINK DLVP WVTK+WV+ LS T PTLAFHAS++  FGKGALINLLRQFAKLH +KKQISVG++GYPNVGKSS+IN L+KKK
Sbjct:  196 DVFNKGQSKRIWGELYKVLDCSDVVIQVLDARNVPGTRCEHVEKHIRKNAAHKHLIFVINKCDLVPNWVTKRWVQKLSETTPTLAFHASMSKPFGKGALINLLRQFAKLHQEKKQISVGLIGYPNVGKSSVINALRKKK 334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Match: A0A7R9UBE2_9STRA (Nucleolar GTP-binding protein 2 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBE2_9STRA)

HSP 1 Score: 235 bits (600), Expect = 2.300e-71
Identity = 108/155 (69.68%), Postives = 134/155 (86.45%), Query Frame = 1 
Query:   37 DTNAPKAWEERGLKRAELFEKGQSRRIWAELYKVLDCSDVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKKWVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKK 501
            DTN  +  +       ++F KGQS+RIW+ELYKVLDCSDVV+QVLDARN+PGTR  H+ER+L+K+A+HKHL+F++NK DLVP WV +KWV+ LS+ +PT+AFHASI+NSFGKGALINLLRQF+KLH DKK+ISVG++GYPNVGKSSIINTL KKK
Sbjct:  193 DTNVERELDHYEAVSHDVFAKGQSKRIWSELYKVLDCSDVVLQVLDARNIPGTRSSHIERYLRKHAAHKHLVFIVNKCDLVPAWVARKWVRALSSDYPTIAFHASISNSFGKGALINLLRQFSKLHGDKKEISVGIIGYPNVGKSSIINTLMKKK 347
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15522.4111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTC1_ECTSI5.120e-80100.00Nucleolar GTP-binding protein 2 n=2 Tax=Ectocarpus... [more]
A0A6U1NL74_9STRA1.410e-7576.77Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7U800_9STRA9.840e-7582.39Nucleolar GTP-binding protein 2 n=2 Tax=Monodopsid... [more]
A0A8K1C6Q5_PYTOL9.500e-7482.01Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WX25_GLOUD4.320e-7381.29Nucleolar GTP-binding protein 2 n=1 Tax=Globispora... [more]
D0NUW0_PHYIT4.320e-7380.58Nucleolar GTP-binding protein 2 n=1 Tax=Phytophtho... [more]
M4BSB5_HYAAE9.470e-7380.58Nucleolar GTP-binding protein 2 n=22 Tax=Peronospo... [more]
A0A5D6XVC1_9STRA1.360e-7280.58Nucleolar GTP-binding protein 2 n=1 Tax=Pythium br... [more]
A0A0P1B5V0_PLAHL2.060e-7179.14Nucleolar GTP-binding protein 2 n=1 Tax=Plasmopara... [more]
A0A7R9UBE2_9STRA2.300e-7169.68Nucleolar GTP-binding protein 2 (Fragment) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15522contigEcto-sp13_S_contig15522:3..3782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score250.4
Seed ortholog evalue6.1e-64
Seed eggNOG ortholog2880.D8LTC1
Preferred nameGNL2
Model size901
KEGG koko:K14537,ko:K16474
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0000166,GO:0001654,GO:0001745,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0009653,GO:0009887,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090596,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Exons7
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG2423@2759
Cds size510
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15522.4111.1prot_Ecto-sp13_S_contig15522.4111.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15522 1712..3782 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.2831686-UTR-Ecto-sp13_S_contig15522:2..1051681462823.2831686-UTR-Ecto-sp13_S_contig15522:2..105Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15522 3..105 -
1681462823.2926762-UTR-Ecto-sp13_S_contig15522:822..10131681462823.2926762-UTR-Ecto-sp13_S_contig15522:822..1013Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15522 823..1013 -
1681462823.3009443-UTR-Ecto-sp13_S_contig15522:1339..14291681462823.3009443-UTR-Ecto-sp13_S_contig15522:1339..1429Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15522 1340..1429 -
1681462823.3089106-UTR-Ecto-sp13_S_contig15522:1704..17111681462823.3089106-UTR-Ecto-sp13_S_contig15522:1704..1711Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15522 1705..1711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.316867-CDS-Ecto-sp13_S_contig15522:1711..18221681462823.316867-CDS-Ecto-sp13_S_contig15522:1711..1822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15522 1712..1822 -
1681462823.3247092-CDS-Ecto-sp13_S_contig15522:2210..23421681462823.3247092-CDS-Ecto-sp13_S_contig15522:2210..2342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15522 2211..2342 -
1681462823.3326309-CDS-Ecto-sp13_S_contig15522:2994..31261681462823.3326309-CDS-Ecto-sp13_S_contig15522:2994..3126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15522 2995..3126 -
1681462823.3430667-CDS-Ecto-sp13_S_contig15522:3647..37821681462823.3430667-CDS-Ecto-sp13_S_contig15522:3647..3782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15522 3648..3782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15522.4111.1

>prot_Ecto-sp13_S_contig15522.4111.1 ID=prot_Ecto-sp13_S_contig15522.4111.1|Name=mRNA_Ecto-sp13_S_contig15522.4111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
QVGRKTYGEGEGDTNAPKAWEERGLKRAELFEKGQSRRIWAELYKVLDCS
DVVIQVLDARNVPGTRCPHLERHLKKNASHKHLIFVINKVDLVPTWVTKK
WVKLLSATHPTLAFHASITNSFGKGALINLLRQFAKLHPDKKQISVGVVG
YPNVGKSSIINTLKKKKAS*
back to top

mRNA from alignment at Ecto-sp13_S_contig15522:3..3782-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15522.4111.1 ID=mRNA_Ecto-sp13_S_contig15522.4111.1|Name=mRNA_Ecto-sp13_S_contig15522.4111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15522:3..3782- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGGGCGCAAAACGTACGGGGAGGGGGAGGGGGACACCAACGCGCC
GAAGGCGTGGGAGGAGAGGGGTCTGAAGAGGGCGGAGCTCTTCGAAAAGG
GACAGAGCAGGCGCATCTGGGCAGAACTGTACAAGGTGGGAACTCGGGAG
GGACGCGCCGCGTAGACATCGGGCTGGTGCGGGCATGGGGGGGAGGGGGG
AGTCCTAAGCTGTGTACGTGGTCGGTTTGACATGGCGTTTGGCTATCGAC
CAAGCGCATGTGTGTGGGAAAGGAGGGGCTCAATCGAGGGGAAGCCGATG
ACGACAGCGGCGGAAAAATGGCGTCGACCGTGTTTTTTTCTATCGTGTGT
GTGAGCAAAACGTGATTGCGCTGCTGTATTGTGAGGCCAAACGTTCATTT
TATCGGAATTTTTTTTTCACCAGGTATCTCCCCAGCGTGGCCGGGTCTTT
TGCGTGATTCAAGATCGCTTCATACCCGTTCGCGCAGATTTGTTCTCGGG
CCCAGAAGAGAGCTGAGATTGCTCCGCCGACACCATACTCTGCTTCTCAT
GAGCCCATCATCATCCCCTGGAGCGCGCGTTGCTGATTCTGTTTTTGCTT
GTTCGGTTTCGTTGGTTTGGCTGCCACGTTTACGTTGCCACGACAACCTC
GGGCAGGTGCTGGATTGCTCGGACGTGGTGATCCAGGTTCTCGACGCGAG
GAACGTTCCCGGAACTCGCTGCCCCCACCTGGAGAGGCACCTCAAGAAGA
ACGCCTCCCACAAGCACCTTATCTTCGTCATCAACAAGGTTCGCTGATGC
TGTGCCCGTGGCCCAGTGTAGCCTTCGAAGGGTCGTGCACTGTCATGTAA
CGATGTTGGATGTAGCATGCAGTCGGGGAAGTTGGGGTAGGGTTTTTAGG
GGTGTGGTCTGCGTACCGCCCTCCCTGTTGTTATTTCCTCAACTTAATTT
CTCGCGAAGGCACTCCGCCTGTGGTGGTGTGGTCGGGGTTGCTCTTTTGG
GGAGGGAGGGAGGCGAGAGGCTGGATGTATAGACGCGCAAAAGGGTCGGA
AGCTGTGTTTGGTGTTTGTTGGGCATTGAAACGCCTGGTTCGTACTGCTG
TCTTCCGTGGGTGTTGATGCCGTTGCTGACGGCGTCGCTTGTTCTACGGA
TGCACATTTGATGTTTTTGTTGTAGGTGTTCTAGTCGCCGTAGGGTGGGG
GGTTGTTTTAGGCGGTAAAGGGCTCGCTGGGGCACCTCGCATCACGCGCG
GCGCTGTGCAAGCATACCCCACCTCTTCGGTCTTTCCTCGCTCGCTGAGT
TATTTCTTGCTGCCTGCTTCTCTGCCTTCCGTGCCGCCCCTACCGTTTTG
ATGTGGCCGCCGCTTGCTGCGTTGCTCACCTGCCCTCCTGCCTGCCCGCC
TGCCTGCCTACTGGACCTACCCGCCTTTTTCTGTGACCAGGTGGACTTGG
TGCCCACTTGGGTGACGAAGAAGTGGGTGAAGCTCCTCTCCGCGACGCAC
CCCACCCTGGCCTTCCACGCGTCCATCACGAACAGCTTCGGGAAGGGCGC
TCTCATCAACCTGCTGAGACAGGTACAGCAAACATGTTGCAAAACGTCGT
TGGTGTCAATGGCTCGGCACGGGACGATAGCTTCGAGTAGAACTGCCGAT
CACCACCCGATTTCAAGAGGTGCTGTGGGAACACTGTGAGCGTTTCCCCT
CTGGGTGGCATCGTCACCCCCGTCCTTCTTGCTTGCATAGAAACCTTGTG
CTCCCGGTTTGATATTTCTGTTGCCGATTCTTGTGTTGTTGTTTGGCATG
AGGTCGAGGTTTTCGCCACCGGTTTTCTCCCCCCCCGCCCCCCCTGCCTG
ATCACCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCCTCCTTGTTGATGTCCGTGGTGTATTCGCTC
GCTTCGTTAGTTCGCGAAGCTTCACCCTGACAAGAAGCAGATCAGCGTCG
GCGTGGTCGGCTACCCGAACGTGGGAAAGAGCTCCATCATCAACACCCTC
AAGAAGAAGAAGGCAAGCTAACCTGTTTGTTTTCCTCCTGCATGCCCCAG
CTTCTATGTATTTCATTTGGAGCTGCGTATGGTGCATGCGTGCTGCTCGG
TTGGCAAGTTTTTTCGACACGCGAACGCCCCCGGTCCTGTAGGAGAGAGA
ACGAGGCGAAGTCACGGCGGTAAGACAGTATTCCGTTCTGGCAATGCATC
ATGTTGAACTTGCACGGTCTGAAAGGGAGCGTATGTATGCCCTTGATCAC
GCTCACCCCCCCCCTCCCCTCTCCCCCCCCCCCCCCCCCCTGCTGTGCTG
CAGGTCTGCAAGGTTGCGCCCGTGCCGGGCGAGACGAAGGTCTGGCAGTA
CATCGCGCTCATGCGTCGCATCTTCATCGTCGACTGCCCAGGGGTGAGAC
CCTTGTCGACAAGAAGAGGCACAGAGGACGGGCAGAGTATCGAAGCTCCT
TTCAGTAAATAAACATACACAGCCACGTGCTACGCGAAAAAGCGTATACC
AATACGACTTTTGTTTCTTGGGTGATGGTGAGTAAAGAAGTCGTACCACG
TGTGTTGTGTTGTATCGGTTATTTCTTTACGAAACCTCACCCACCGCGCA
CGTTGCCCTGCCGCAGCTATTGATGTGACGTTTAAGCGCCACAACTTCCC
CACAGCAGAGTATTTTCTTACGCTTTCTTTTGTCTTGATTTTCGATAACG
TTTTTGCCTGGGATCGAAGGTGGTCTACGACGACGGTGACGACGAGATCG
AGATCGTGTTGAAGGGGGTCGTGCGGGCGGAGAAGCTTCCTGACCCGACG
GACTTCGTGCCGGCCATCCTGTCGCGTGTGAAGGAGGAGTACGTCCGCCG
GCTGTACGGGGTGGCCGCCTGGGAAGACGCGACGGACTTCATGACCAAGC
TCGCCGCCAGGTCTGAAGAGAAGCAGGGAGACGGAATGCACGGAGGAACG
GAGAGGGCGGAGAGACAAGCAGAGAGGGGGGGGAGGGGAGAGGCAGAGAC
AGAAAGGGACAGAGTCAAAGAGGCAGATAGTGACAGAGTCAAACAGGCAG
GCAGGCAGGCAAGTAGGACTGATCAAAGGCAAGAGACAATTAGTGAGTCT
GTTCTGTTTGTGGGTGGTGATTCTTGTTCGCTTGACGTTTTCTGCCTTGG
CCGACTTGGTGGTGTCTTGGTTGCGTGTTTCCTGCAGCTGTGCTTTAAAT
GTCTAAACCTAACGTGCCGATGGATTGTCGGTGATCGCTGTGAGTACATG
AGGACGACAGTTTCACCAATAGTAGCCAACGTCCCTCAACGTGGGGCTTA
GTAACGAGCTCCACAGCAAGGGTTGCAGAATCGCCGATAAACGGGCGACG
TATCTTCCTCGATGTCCTCGCCCTTTGTGTATCTCCACTTCCCTCTCAAC
CAATAATCCTCTTCCCCTCTTCCTCTCTCCCTCCCCCCCCCTCCCTCCCT
CTCCCTCTCTCCCCCTCGCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCGCTCCTTCTGTGGGGTTATTTTTTTGTTTGTGTTG
CCCTCCATCTTTTTTCGCCGGTTCAAACGTTGCGCTCCAAATTACGCCTA
ATACACCCGGTTCGAAACGGGAGACAGATCCGGCCGACTTCTAGCGGGGG
GAGAGCCCGACTTCCACTCTGTGGCGGTGAACATCATCAACGACTACCAG
CGCGGGAAGCTGCCGTACTTCGTGGCGCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15522:3..3782-

>mRNA_Ecto-sp13_S_contig15522.4111.1 ID=mRNA_Ecto-sp13_S_contig15522.4111.1|Name=mRNA_Ecto-sp13_S_contig15522.4111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15522:3..3782- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGGGCGCAAAACGTACGGGGAGGGGGAGGGGGACACCAACGCGCC
GAAGGCGTGGGAGGAGAGGGGTCTGAAGAGGGCGGAGCTCTTCGAAAAGG
GACAGAGCAGGCGCATCTGGGCAGAACTGTACAAGGTGCTGGATTGCTCG
GACGTGGTGATCCAGGTTCTCGACGCGAGGAACGTTCCCGGAACTCGCTG
CCCCCACCTGGAGAGGCACCTCAAGAAGAACGCCTCCCACAAGCACCTTA
TCTTCGTCATCAACAAGGTGGACTTGGTGCCCACTTGGGTGACGAAGAAG
TGGGTGAAGCTCCTCTCCGCGACGCACCCCACCCTGGCCTTCCACGCGTC
CATCACGAACAGCTTCGGGAAGGGCGCTCTCATCAACCTGCTGAGACAGT
TCGCGAAGCTTCACCCTGACAAGAAGCAGATCAGCGTCGGCGTGGTCGGC
TACCCGAACGTGGGAAAGAGCTCCATCATCAACACCCTCAAGAAGAAGAA
GGCAAGCTAA
back to top