mRNA_Ecto-sp13_S_contig1552.4110.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1552.4110.1
Unique NamemRNA_Ecto-sp13_S_contig1552.4110.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1552.4110.1 vs. uniprot
Match: D8LHL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL0_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 9.300e-70
Identity = 129/148 (87.16%), Postives = 132/148 (89.19%), Query Frame = -1 
Query:   37 SSASFPLFVRFEVVHDETVCVDGTDGDATAMATVAAAAASEEGDENEQDGGVHVGNDAAPGSFPCGAWQQQRRRHRSRGCVVDTSHTLSRALKSMLDVARAGQAVGRFDGAGACADGEGLGGAQSHLCILATTFPASDWSRSAPSGAE 480
            SSASFPLFVRFEVVHDETVCVDG D DA AMAT+AAAA S +GDENE DG VHVGNDAAPGSF  GAWQQQ RRHRSRGCVVD SH LSRALKSM +VARA QAVGRFDGAGACAD EGLGGAQSHLCILATTFPASDWSRSA SGAE
Sbjct: 1176 SSASFPLFVRFEVVHDETVCVDGPDEDAAAMATIAAAATSGDGDENEHDGRVHVGNDAAPGSFHYGAWQQQPRRHRSRGCVVDASHALSRALKSMPNVARAEQAVGRFDGAGACADCEGLGGAQSHLCILATTFPASDWSRSASSGAE 1323
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1552.4110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHL0_ECTSI9.300e-7087.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1552contigEcto-sp13_S_contig1552:13930..14745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size816
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.2361143-UTR-Ecto-sp13_S_contig1552:13929..140311681462823.2361143-UTR-Ecto-sp13_S_contig1552:13929..14031Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1552 13930..14031 +
1681462823.2525868-UTR-Ecto-sp13_S_contig1552:14496..147451681462823.2525868-UTR-Ecto-sp13_S_contig1552:14496..14745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1552 14497..14745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.2445524-CDS-Ecto-sp13_S_contig1552:14031..144961681462823.2445524-CDS-Ecto-sp13_S_contig1552:14031..14496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1552 14032..14496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1552.4110.1prot_Ecto-sp13_S_contig1552.4110.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1552 14032..14496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1552.4110.1

>prot_Ecto-sp13_S_contig1552.4110.1 ID=prot_Ecto-sp13_S_contig1552.4110.1|Name=mRNA_Ecto-sp13_S_contig1552.4110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MRLRPAQAFTVGAGAGPIESADRLPSTGNVQHRLESSRQRVTGVDDATSA
SVPPPLLLPSAARERTWGRIVADVDSAVLLVFVPFLRGCRCRYRGHRRRI
SVGPVDTHRLVVDDLEAHEERERRRRRYRRGRRRRSSHHRGVGDGRQGAA
TALQ*
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mRNA from alignment at Ecto-sp13_S_contig1552:13930..14745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1552.4110.1 ID=mRNA_Ecto-sp13_S_contig1552.4110.1|Name=mRNA_Ecto-sp13_S_contig1552.4110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1552:13930..14745+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGACAGGCGAGTGTCCGTCGCCGCCAGTCCCAGCCTCCGCACCGCTGG
GAGCAGACCTTGACCAATCAGACGCAGGGAAGGTCGTCGCCAAAATGCAG
AGATGCGACTGCGCCCCGCCCAGGCCTTCACCGTCGGCGCAGGCGCCGGC
CCCATCGAATCTGCCGACCGCCTGCCCAGCACGGGCAACGTCCAGCATCG
ACTTGAGAGCTCGCGACAACGTGTGACTGGTGTCGACGACGCAACCTCTG
CTTCGGTGCCGCCGCCGTTGCTGCTGCCAAGCGCCGCAAGGGAACGAACC
TGGGGCCGCATCGTTGCCGACGTGGACTCCGCCGTCTTGCTCGTTTTCGT
CCCCTTCCTCCGAGGCTGCCGCTGCCGCTACCGTGGCCATCGCCGTCGCA
TCTCCGTCGGTCCCGTCGACACACACCGTCTCGTCGTGGACGACCTCGAA
GCGCACGAAGAGCGGGAAAGACGCCGAAGACGTTACCGCCGCGGCCGCCG
CAGAAGAAGCAGCCACCATCGTGGGGTCGGTGACGGCAGACAGGGAGCTG
CTACGGCCCTGCAGTGATTGGTTGGCGCAGGTGCTGCTGCTGGTGCTGAT
GTTGTTGTTGTGTGGCGACCCTCCGCTAAATGTGGGTATCAGAGCTGCGG
CCATGTTGTCCGACACCGGGCCGGACCAATGGTGGCTGGCTGCGGCCGCC
GTCGTCGTTAGAGATGTCTCGGTCACCGTGTGTGGCGGAATAAGTGTCTC
GCCAGCAGCAGCAGCAGCAGCACCACCACGACCACCAGCCGACGCGGAAC
TCGCCTGTTGGATGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1552:13930..14745+

>mRNA_Ecto-sp13_S_contig1552.4110.1 ID=mRNA_Ecto-sp13_S_contig1552.4110.1|Name=mRNA_Ecto-sp13_S_contig1552.4110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1552:13930..14745+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACTGCGCCCCGCCCAGGCCTTCACCGTCGGCGCAGGCGCCGGCCC
CATCGAATCTGCCGACCGCCTGCCCAGCACGGGCAACGTCCAGCATCGAC
TTGAGAGCTCGCGACAACGTGTGACTGGTGTCGACGACGCAACCTCTGCT
TCGGTGCCGCCGCCGTTGCTGCTGCCAAGCGCCGCAAGGGAACGAACCTG
GGGCCGCATCGTTGCCGACGTGGACTCCGCCGTCTTGCTCGTTTTCGTCC
CCTTCCTCCGAGGCTGCCGCTGCCGCTACCGTGGCCATCGCCGTCGCATC
TCCGTCGGTCCCGTCGACACACACCGTCTCGTCGTGGACGACCTCGAAGC
GCACGAAGAGCGGGAAAGACGCCGAAGACGTTACCGCCGCGGCCGCCGCA
GAAGAAGCAGCCACCATCGTGGGGTCGGTGACGGCAGACAGGGAGCTGCT
ACGGCCCTGCAGTGA
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