mRNA_Ecto-sp13_S_contig15515.4109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15515.4109.1
Unique NamemRNA_Ecto-sp13_S_contig15515.4109.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 2.740e-87
Identity = 158/267 (59.18%), Postives = 181/267 (67.79%), Query Frame = 1
Query:    7 KSEITMFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSAL------RTVPEAPT-------------------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAIPFGAVPYRLLRDRRSSTGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR 732
            ++EI+  +KTL GK H IRAFPSETVLD+K K +  + IP +QQR++Y G+Q  DD TLR  NI+NGS  H VL L   K VILLYPPAPVD TV +ELSPLWSFS+L      R + +                      VHASP GSL+DLSTGREYPYLFWEADSSDGR+          FG    R       + GVFLD ALERLGLN+RERCDMVT WLPQLESS FNVIYFV+VERYE+ ARL+I P PDVTIRVFMAFR
Sbjct:  155 ENEISFSIKTLTGKQHTIRAFPSETVLDVKKKVQDTQGIPCEQQRIIYAGQQTSDDRTLRDCNIRNGSVAHLVLSL--RKPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRV-------TRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFR 412          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A8H8JUU4_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JUU4_9AGAM)

HSP 1 Score: 188 bits (477), Expect = 3.930e-52
Identity = 123/273 (45.05%), Postives = 150/273 (54.95%), Query Frame = 1
Query:   10 SEITMFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPV-DTTVTLELSPLWSFSAL-------RTVPEAP----TVHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSA-------IPFG-AVPYRLLRDR----RSSTGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMN 756
            S +T+FVKTL GKT  + A+ S+T+  IK K +  E IP DQQRL++ GKQLED L L  YNIQ+ STLH VLRL GGK VI L+PP P  D  + L L+  W FS L       RT  +      TV A PD +L D +TGRE  YLFWEA S+   L  P  T A        PF  A P     D           ++D AL  LGL+   RC  +TYWLP L+   +  + F+    YE  ARL+I P PDVT RVFM FR V  A + 
Sbjct:  118 SIMTLFVKTLTGKTITVYAYRSDTIDCIKAKIQDREGIPPDQQRLIFAGKQLEDGLMLIDYNIQDNSTLHLVLRLRGGKPVIYLFPPIPTSDIRIELALTKRWGFSVLYPPAAISRTADDGQSVLWTVDAKPDSTLFDRATGREVSYLFWEAHSNSTELPSPACTRACTPVEDIFPFDPARPSLTPADSVVLPLDKVTEYIDDALLSLGLHTEARCSFITYWLPDLQRHQYIALRFLPQPDYEAAARLNITPIPDVTTRVFMLFRGVEEADLG 390          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A8H8J338_9AGAM (Ubiquitin family protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J338_9AGAM)

HSP 1 Score: 167 bits (423), Expect = 1.780e-45
Identity = 109/272 (40.07%), Postives = 145/272 (53.31%), Query Frame = 1
Query:   22 MFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTT-VTLELSPLWSFSALRTVPEA---PT----------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTS-AIPFGAV-----PYRLLRDRRSSTGV-------FLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMN 756
            ++VKTL GKT  +    S+T+ ++K K +  E  P +QQRL++ GKQ+EDD TL  YNIQ   T+H V  L GGK V+ L+PP P +   V L L+P WSFSAL   P A   PT          V A PDG+L D  TGRE  YLFWEA ++      P ++    P   V     P R +    +ST +       ++D  L  LGL+   RC  +TYWLP L+      + F+    YE  A + + P+PDVT RVFM FR V  A + 
Sbjct:    3 VYVKTLTGKTITLEVESSDTIANVKAKIQDKEGYPPEQQRLMFAGKQIEDDCTLGDYNIQKEYTIHFVSTLRGGKPVVYLFPPLPTNRIRVDLALAPAWSFSALY--PSASVRPTAGGGQSVAWIVDAKPDGTLSDRGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQEVAATFDPSRPVITPDNSTVIPFDKATGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFRGVEEAELT 272          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A8H6LY83_9AGAR (Ubiquitin-domain-containing protein n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6LY83_9AGAR)

HSP 1 Score: 156 bits (395), Expect = 2.780e-41
Identity = 103/265 (38.87%), Postives = 137/265 (51.70%), Query Frame = 1
Query:   28 VKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSALRTVPEAPT--------------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAI-PFGA--------VPYRLLRDRRSS-------TGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR 732
            V+TL GKT  +    S+ V DIK K +  E IP DQQRLL+  + L+DDLTL  Y+I NGS +  +L+L G K VI L+PP     T  L L P W FSAL   P AP               V A P G L ++STG E  YL+WEA+++   LL P  +  + P G         VP R + +  ++          +LD AL+ LGL++  R   +TYWLP L       + F+    YE  A L + PAPDV  R+FM F+
Sbjct:    5 VRTLTGKTFGLVCKSSDCVKDIKAKIQDKEGIPSDQQRLLFAERHLQDDLTLSDYHITNGSPILLILKLRGDKPVIYLFPPIATRVTTRLSLVPEWKFSALY--PIAPVTKEGTDAGQRVEWIVDAEPSGILNEVSTGLEVSYLYWEAETTSKGLLTPPASPRLSPVGLDTSAERVFVPNRPIIEPANAIVLEVGKVASYLDSALQALGLHVEARTSFITYWLPSLLKHKHIALRFLPQSTYEHAAPLEVDPAPDVVARIFMLFK 267          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A8H5AST4_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5AST4_9AGAR)

HSP 1 Score: 158 bits (400), Expect = 5.940e-41
Identity = 103/265 (38.87%), Postives = 137/265 (51.70%), Query Frame = 1
Query:   28 VKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSALRTVPEAPT--------------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPL---------LTSAIPFGAVPYRLLRDRRSS-------TGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR 732
            V+TL GKT  +    S+ V DIK K +  E IP DQQRLL+  + L+DDLTL  Y+I NGS +  +L+L G K VI L+PP     T  L L P W FSAL   P AP               V A P G L ++STG E  YL+WEA ++   LL P          L +++    VP R + +  ++          +LDRAL  LGL++  R   +TYWLP L +     + F+    YE  A L + PAPDV  R+FM F+
Sbjct:  116 VRTLTGKTFGLVCKSSDCVKDIKSKIQDKEGIPADQQRLLFAERHLQDDLTLSDYHITNGSPILLILKLRGDKPVIYLFPPIATRVTTRLSLVPEWKFSALY--PIAPVTKESTGAGQRVEWIVDAEPSGILNEVSTGLEVSYLYWEAKTTSKGLLTPPASPRSSTVGLDTSVERVFVPNRPIIEPTNAIVLEVRKVASYLDRALRALGLHVEARTSFITYWLPSLLNHQHVALRFLPQSTYEHAAPLEVDPAPDVVARIFMLFK 378          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A5C2S7E1_9APHY (Ubiquitin-domain-containing protein n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2S7E1_9APHY)

HSP 1 Score: 156 bits (395), Expect = 2.250e-40
Identity = 108/286 (37.76%), Postives = 141/286 (49.30%), Query Frame = 1
Query:   16 ITMFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTL-HRVLRLCGGKMVILLYPPAPV-DTTVTLELSPLWSFSALRTVPEAP------------TVHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAIPFG----------------------AVPYRLLRDRRSSTGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMNQTI 765
            I + V TL GKT II+  P  TV  +K      E IP DQQRL++ G+QLEDD TL HY I   S + H VLRL GGK VI L+PP+PV   TV++ L P W+FS +    +              +V A+P+GSL D  TG E  YLFWEA S       P LT A+                          +P+  L         +LD  L+ L L+   R D +TYWLP L    +  + F+    YE+ A+L + PAPDV  RVFM FR + +  +   I
Sbjct:   95 IDILVVTLTGKTIIIKINPRTTVRILKSYICDKEGIPEDQQRLIFAGRQLEDDHTLSHYGIVYSSVIVHLVLRLRGGKPVIYLFPPSPVAHATVSIRLVPQWTFSHIYPPCDIKLLNDDLGQSITWSVFANPNGSLSDNRTGVELSYLFWEALSKSSIQTTPPLTPAVDASYSTTEHFDPSLPSLKPGHPTVVLLPFATLLP-------YLDTVLKSLTLHTSARNDFITYWLPALSRKPYVALRFLPQATYERAAQLEVTPAPDVVTRVFMLFRGIASEDVESDI 373          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A0B7FZ76_THACB (Polyubiquitin-C n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FZ76_THACB)

HSP 1 Score: 152 bits (384), Expect = 1.970e-38
Identity = 102/270 (37.78%), Postives = 138/270 (51.11%), Query Frame = 1
Query:   22 MFVKTLAG-----KTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTT-VTLELSPLWSFSALRTVPEAPT-------------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLL---------IPLLTSAIPFGAVPYRLLRDRRS-----STGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR 732
            + VK + G     KT  I + PS+T+ ++K K +  E  P D+QRL+Y G Q+ED   L  YN+ +G+TLH V RL GGK VI ++PP P+D   V L L   W+FS +    E  T             V A PDG L D +T RE  YLFWEA ++  RLL          P+ T ++ F      LL  + +         ++D  L  LGL+   R   +TYWLP L    +  + F+    YEK A L+I PAP+V  RVFM FR
Sbjct:  131 ILVKKIGGEPPTPKTITIYSDPSDTIGNVKAKIQDKEGFPPDEQRLIYMGGQMEDGRALSDYNVSSGATLHLVFRLRGGKPVIYIFPPTPMDDIRVHLSLDKAWNFSEIYPPTETLTNSGKPHGQSVIWTVCAKPDGILLDQATNREVAYLFWEAHTNP-RLLPSPPGTRPNTPVETPSLAFDPADPYLLPSQSALLPFEKVTSYIDDVLLALGLHTEARTSFITYWLPNLSKHKYIALKFLPQGEYEKAAPLNITPAPEVMTRVFMLFR 399          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A146IBV7_MYCCL (Ubiquitin family protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IBV7_MYCCL)

HSP 1 Score: 153 bits (387), Expect = 2.380e-37
Identity = 100/274 (36.50%), Postives = 137/274 (50.00%), Query Frame = 1
Query:   22 MFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSALRTV-----PEAPTVHAS--------PDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAIPFGAVPYR---LLRDRRSSTGV---------FLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMNQTIG 768
            +FVK   GKT  +    ++T++ IK   E  E IPV QQRL++HG QLEDD+    Y I   ST+H VLRLCGGK +I L  P  +D +V + L   WSFSA+  V     PE   +H +        PDG+L D  +G +  YLFWEA ++     +    S +     P+R        ++ T V         +LD+ L  LGL++  R   +TYWLP        ++ F+    YE  A L + P PDV  RVFM FR V    M   +G
Sbjct:  218 VFVKMQTGKTITLSVSSADTIMQIKTIVEEIEGIPVKQQRLIFHGTQLEDDILAADYGICKDSTVHLVLRLCGGKPIIYLRSPEELDASVQISLVSDWSFSAVYPVVPVSEPEGLRLHQTVAWSICVRPDGTLLDKDSGTDVSYLFWEALTNPPFDQLSPPPSPVVGRVEPFRPASATNAFKNETSVVLSVDAVPGYLDKVLLELGLDVEARTSFITYWLPSFLEHKHILLTFLPQAAYEVAAPLRVTPTPDVVTRVFMVFRGVERDEMGLWVG 491          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A2H3CZP3_ARMGA (Ubiquitin-domain-containing protein n=1 Tax=Armillaria gallica TaxID=47427 RepID=A0A2H3CZP3_ARMGA)

HSP 1 Score: 145 bits (366), Expect = 3.050e-37
Identity = 97/256 (37.89%), Postives = 135/256 (52.73%), Query Frame = 1
Query:   79 TVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSALRT-VPEAPT---------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAIPFG-----AVP-----YRLLRDRRS------STGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMNQTIG 768
            +V D+K+  E  E IP DQQRL++ GKQLEDD  L  Y I+N +T+H  +RL GGK VI L+ P P++  V L +   WSFSA+   VP  P+         V+   D ++ D +TG    YLFWEA+++ G  L P   S+   G     A+P        L D  S       T ++LD+AL  LGL++  R   +TYWLP +    F  + F+    YE  A L + P PDV  RVFM F+ V    +++  G
Sbjct:    6 SVFDVKELVEFTEGIPPDQQRLIFGGKQLEDDRQLSDYGIKNEATIHLAVRLRGGKPVIYLFTPHPLNAVVRLSIVKAWSFSAVYPGVPIKPSESGQSIEWNVNTHEDHTMTDTATGVRVSYLFWEAETNPG--LPPSPPSSPRLGQSHSDAIPRFDPLMAELTDTNSVVLPTSKTTLYLDKALTALGLHIEARTSFITYWLPSILKHDFVALRFLPQVSYEHAAPLDVEPKPDVVTRVFMLFKRVCDDELDEWEG 259          
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: M7XCE8_RHOT1 (Ubiquitin family protein n=1 Tax=Rhodosporidium toruloides (strain NP11) TaxID=1130832 RepID=M7XCE8_RHOT1)

HSP 1 Score: 147 bits (370), Expect = 1.000e-36
Identity = 102/268 (38.06%), Postives = 140/268 (52.24%), Query Frame = 1
Query:   16 ITMFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDT-TVTLELSPLWSFSALRTVPEAP-----------TVHASPDGSLEDLSTGREYPYLFWEAD------SSDGRLLI----PLLTS----AIPFGAVPYRLLRDRRSSTGVFLDRALERLGLNMRERCDMVTYWLP---QLESSAFNVIY-FVDVERYEKTARLSIAPAPDVTIRVFMAF 729
            I +FVKTL G+T  +   P  ++  ++D     E I   QQRL++ GKQLE+  TL  Y I   STLH +LRL GGK VI L+PP P+D+ +V+L L+P W FSAL  V               TV A PDGSL DL++G E  YLFWEA+      S+   L+     PLL +    A+PF A                LD+ L  L L+   R D +TYWL    ++  +  ++ + F+  + YE+   L + P PDV  RVF+ F
Sbjct:  117 IQIFVKTLTGRTITLEVLPDASLESVRDMIRDVEGISPCQQRLIFAGKQLENGHTLADYQIAKDSTLHLLLRLTGGKPVIYLFPPTPLDSASVSLTLTPEWHFSALYPVVHPVEGGNGETRASWTVSAQPDGSLVDLASGLELKYLFWEAEAYKTTSSAPSHLVFDPSNPLLDASNGCALPFAAFL------------AHLDQTLAALSLHTAARNDFITYWLSHFTRIRDAGQHIGFRFLAQDDYERATHLDVNPMPDVVTRVFLLF 372          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI2.740e-8759.18Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A8H8JUU4_9AGAM3.930e-5245.05Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]
A0A8H8J338_9AGAM1.780e-4540.07Ubiquitin family protein n=2 Tax=Ceratobasidium sp... [more]
A0A8H6LY83_9AGAR2.780e-4138.87Ubiquitin-domain-containing protein n=2 Tax=Tulose... [more]
A0A8H5AST4_9AGAR5.940e-4138.87Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
A0A5C2S7E1_9APHY2.250e-4037.76Ubiquitin-domain-containing protein n=2 Tax=Lentin... [more]
A0A0B7FZ76_THACB1.970e-3837.78Polyubiquitin-C n=1 Tax=Thanatephorus cucumeris (s... [more]
A0A146IBV7_MYCCL2.380e-3736.50Ubiquitin family protein n=1 Tax=Mycena chlorophos... [more]
A0A2H3CZP3_ARMGA3.050e-3737.89Ubiquitin-domain-containing protein n=1 Tax=Armill... [more]
M7XCE8_RHOT11.000e-3638.06Ubiquitin family protein n=1 Tax=Rhodosporidium to... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15515contigEcto-sp13_S_contig15515:2090..3760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score281.2
Seed ortholog evalue4.5e-73
Seed eggNOG ortholog2880.D7G4B4
Model size1100
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
Cds size714
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.1779277-UTR-Ecto-sp13_S_contig15515:2089..21101681462823.1779277-UTR-Ecto-sp13_S_contig15515:2089..2110Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15515 2090..2110 +
1681462823.2124033-UTR-Ecto-sp13_S_contig15515:3395..37601681462823.2124033-UTR-Ecto-sp13_S_contig15515:3395..3760Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15515 3396..3760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.188131-CDS-Ecto-sp13_S_contig15515:2110..24401681462823.188131-CDS-Ecto-sp13_S_contig15515:2110..2440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15515 2111..2440 +
1681462823.1962943-CDS-Ecto-sp13_S_contig15515:2831..29271681462823.1962943-CDS-Ecto-sp13_S_contig15515:2831..2927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15515 2832..2927 +
1681462823.2043545-CDS-Ecto-sp13_S_contig15515:3107..33951681462823.2043545-CDS-Ecto-sp13_S_contig15515:3107..3395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15515 3108..3395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15515.4109.1prot_Ecto-sp13_S_contig15515.4109.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15515 2111..3395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15515.4109.1

>prot_Ecto-sp13_S_contig15515.4109.1 ID=prot_Ecto-sp13_S_contig15515.4109.1|Name=mRNA_Ecto-sp13_S_contig15515.4109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLED
DLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSF
SALRTVPEAPTVHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTS
AIPFGAVPYRLLRDRRSSTGVFLDRALERLGLNMRERCDMVTYWLPQLES
SAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*
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mRNA from alignment at Ecto-sp13_S_contig15515:2090..3760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15515.4109.1 ID=mRNA_Ecto-sp13_S_contig15515.4109.1|Name=mRNA_Ecto-sp13_S_contig15515.4109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1671bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15515:2090..3760+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCGGAAGAGCGAAATTACCATGTTCGTCAAGACACTCGCTGGCAAGAC CCACATCATCAGAGCTTTTCCCAGTGAAACTGTGCTGGACATCAAGGACA AGAGTGAACGTGCGGAAGACATTCCCGTCGACCAGCAGCGCCTCCTCTAC CATGGCAAGCAATTAGAAGATGACCTGACCCTGCGTCATTACAACATTCA GAACGGTTCCACCCTCCATAGGGTGTTGCGTCTATGTGGGGGAAAAATGG TGATCCTCCTGTATCCGCCAGCCCCTGTCGATACCACTGTCACGCTGGAG CTGAGCCCGCTCTGGAGCTTCTCCGCACTGCGCACTGTACCCGAAGCCCC CGTCTAGCAAGTTGCAGGAGGCAGCCCCGGGCCCCGAGGTCAGTCTTTTG ATGGTGCCATTTGGGACCAGCAGAAAGCAAAACTAGACGCGCTTAGCGCA TCGTGCTCCAAAATTCGCATGGTATGTATGATTTTCGCTCGACGGGAGAT CTCACACTTTCCGGCGGTGTAAGGCCGCGAGACTCTTGTTGCGTTGTAGT ATATAAATTTTCTGTCTAGGGCAACTCTTCGTACCTCCTTCTTATCGACA CCAGGCCTTCTGGTGTGACGCCAACACCACACGATTGCCTGCACACACTC TGCTTCGCGCCATCAACCCACCCTCACTCTACTTGTCCCGTGGTGAAACT GGTTTCCAGGTTGTCGTGGCTAGTGGCCAACAGTGCAAGTAGACCGTCCA CGCCAGTCCCGACGGGTCCCTTGAAGACCTCAGCACCGGCAGGGAGTACC CGTACCTCTTCTGGGAAGCAGATTCATCCGACGGCCGAGTTTCGCGGAGC TTTGGGTTGGACGATACGAGGTCGTTTTGCATGGCAGGCGACACGGCAGG TACGATACGCTCCTCATTGGCTCTGTGGCTCTTTCTGCGAACGTCCCTAC CAAGACATATTCCACGCCTGCTCTTCCGACCTCCTCGTTCGCTGCGGCTG CACGCAACGTTTTCGTAGCTGCTCATCCCATTGTTGACATCCGCCATCCC GTTTGGCGCCGTCCCCTACCGACTTTTGCGCGATCGACGTTCTTCGACAG GCGTGTTCCTCGACCGTGCCCTGGAGCGCCTCGGGCTCAACATGCGGGAG CGCTGCGATATGGTCACCTACTGGCTGCCGCAGCTGGAGTCATCCGCCTT CAACGTCATCTACTTCGTGGACGTAGAGCGGTACGAGAAGACGGCCCGTC TGAGCATTGCGCCTGCTCCGGACGTCACGATCCGGGTCTTCATGGCCTTC CGGTAGGTCGTGACTGCCGGAATGAATCAAACCATAGGCTGAACTTAATC TATGCTACAGGAGTGTGGACCACAACCTCGTAGCGTGCAGCAGCGCGTGC CTTGACAATTGTTTCTTGGCGTTGCTCACCGACTGTCAAGAGCGACATCG TACGGCTCAATAATGCCTGTAACACTTTATTCGAAAATGTTGGTGCAGAT TAACTGTCGCCCCTTTTCTCCCCCCTTTGCCAGCCATGAGTAGAACACGA CGTATTCCCCTCTCCGACCCGCCTCGTTGCATGCGAAATGACATCGTTGC TGCTGGGCAGAGGCGTGAAATCGTACGACGCGGAGCTTGACACCGCCAAG ATGGAAGACCTACGAGCGCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15515:2090..3760+

>mRNA_Ecto-sp13_S_contig15515.4109.1 ID=mRNA_Ecto-sp13_S_contig15515.4109.1|Name=mRNA_Ecto-sp13_S_contig15515.4109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15515:2090..3760+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCAAGACACTCGCTGGCAAGACCCACATCATCAGAGCTTTTCC
CAGTGAAACTGTGCTGGACATCAAGGACAAGAGTGAACGTGCGGAAGACA
TTCCCGTCGACCAGCAGCGCCTCCTCTACCATGGCAAGCAATTAGAAGAT
GACCTGACCCTGCGTCATTACAACATTCAGAACGGTTCCACCCTCCATAG
GGTGTTGCGTCTATGTGGGGGAAAAATGGTGATCCTCCTGTATCCGCCAG
CCCCTGTCGATACCACTGTCACGCTGGAGCTGAGCCCGCTCTGGAGCTTC
TCCGCACTGCGCACTGTACCCGAAGCCCCCACCGTCCACGCCAGTCCCGA
CGGGTCCCTTGAAGACCTCAGCACCGGCAGGGAGTACCCGTACCTCTTCT
GGGAAGCAGATTCATCCGACGGCCGACTGCTCATCCCATTGTTGACATCC
GCCATCCCGTTTGGCGCCGTCCCCTACCGACTTTTGCGCGATCGACGTTC
TTCGACAGGCGTGTTCCTCGACCGTGCCCTGGAGCGCCTCGGGCTCAACA
TGCGGGAGCGCTGCGATATGGTCACCTACTGGCTGCCGCAGCTGGAGTCA
TCCGCCTTCAACGTCATCTACTTCGTGGACGTAGAGCGGTACGAGAAGAC
GGCCCGTCTGAGCATTGCGCCTGCTCCGGACGTCACGATCCGGGTCTTCA
TGGCCTTCCGGTAG
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