mRNA_Ecto-sp13_S_contig15515.4109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI) HSP 1 Score: 280 bits (715), Expect = 2.740e-87 Identity = 158/267 (59.18%), Postives = 181/267 (67.79%), Query Frame = 1
Query: 7 KSEITMFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSAL------RTVPEAPT-------------------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAIPFGAVPYRLLRDRRSSTGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR 732
++EI+ +KTL GK H IRAFPSETVLD+K K + + IP +QQR++Y G+Q DD TLR NI+NGS H VL L K VILLYPPAPVD TV +ELSPLWSFS+L R + + VHASP GSL+DLSTGREYPYLFWEADSSDGR+ FG R + GVFLD ALERLGLN+RERCDMVT WLPQLESS FNVIYFV+VERYE+ ARL+I P PDVTIRVFMAFR
Sbjct: 155 ENEISFSIKTLTGKQHTIRAFPSETVLDVKKKVQDTQGIPCEQQRIIYAGQQTSDDRTLRDCNIRNGSVAHLVLSL--RKPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRV-------TRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFR 412
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A8H8JUU4_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JUU4_9AGAM) HSP 1 Score: 188 bits (477), Expect = 3.930e-52 Identity = 123/273 (45.05%), Postives = 150/273 (54.95%), Query Frame = 1
Query: 10 SEITMFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPV-DTTVTLELSPLWSFSAL-------RTVPEAP----TVHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSA-------IPFG-AVPYRLLRDR----RSSTGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMN 756
S +T+FVKTL GKT + A+ S+T+ IK K + E IP DQQRL++ GKQLED L L YNIQ+ STLH VLRL GGK VI L+PP P D + L L+ W FS L RT + TV A PD +L D +TGRE YLFWEA S+ L P T A PF A P D ++D AL LGL+ RC +TYWLP L+ + + F+ YE ARL+I P PDVT RVFM FR V A +
Sbjct: 118 SIMTLFVKTLTGKTITVYAYRSDTIDCIKAKIQDREGIPPDQQRLIFAGKQLEDGLMLIDYNIQDNSTLHLVLRLRGGKPVIYLFPPIPTSDIRIELALTKRWGFSVLYPPAAISRTADDGQSVLWTVDAKPDSTLFDRATGREVSYLFWEAHSNSTELPSPACTRACTPVEDIFPFDPARPSLTPADSVVLPLDKVTEYIDDALLSLGLHTEARCSFITYWLPDLQRHQYIALRFLPQPDYEAAARLNITPIPDVTTRVFMLFRGVEEADLG 390
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A8H8J338_9AGAM (Ubiquitin family protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J338_9AGAM) HSP 1 Score: 167 bits (423), Expect = 1.780e-45 Identity = 109/272 (40.07%), Postives = 145/272 (53.31%), Query Frame = 1
Query: 22 MFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTT-VTLELSPLWSFSALRTVPEA---PT----------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTS-AIPFGAV-----PYRLLRDRRSSTGV-------FLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMN 756
++VKTL GKT + S+T+ ++K K + E P +QQRL++ GKQ+EDD TL YNIQ T+H V L GGK V+ L+PP P + V L L+P WSFSAL P A PT V A PDG+L D TGRE YLFWEA ++ P ++ P V P R + +ST + ++D L LGL+ RC +TYWLP L+ + F+ YE A + + P+PDVT RVFM FR V A +
Sbjct: 3 VYVKTLTGKTITLEVESSDTIANVKAKIQDKEGYPPEQQRLMFAGKQIEDDCTLGDYNIQKEYTIHFVSTLRGGKPVVYLFPPLPTNRIRVDLALAPAWSFSALY--PSASVRPTAGGGQSVAWIVDAKPDGTLSDRGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQEVAATFDPSRPVITPDNSTVIPFDKATGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFRGVEEAELT 272
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A8H6LY83_9AGAR (Ubiquitin-domain-containing protein n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6LY83_9AGAR) HSP 1 Score: 156 bits (395), Expect = 2.780e-41 Identity = 103/265 (38.87%), Postives = 137/265 (51.70%), Query Frame = 1
Query: 28 VKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSALRTVPEAPT--------------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAI-PFGA--------VPYRLLRDRRSS-------TGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR 732
V+TL GKT + S+ V DIK K + E IP DQQRLL+ + L+DDLTL Y+I NGS + +L+L G K VI L+PP T L L P W FSAL P AP V A P G L ++STG E YL+WEA+++ LL P + + P G VP R + + ++ +LD AL+ LGL++ R +TYWLP L + F+ YE A L + PAPDV R+FM F+
Sbjct: 5 VRTLTGKTFGLVCKSSDCVKDIKAKIQDKEGIPSDQQRLLFAERHLQDDLTLSDYHITNGSPILLILKLRGDKPVIYLFPPIATRVTTRLSLVPEWKFSALY--PIAPVTKEGTDAGQRVEWIVDAEPSGILNEVSTGLEVSYLYWEAETTSKGLLTPPASPRLSPVGLDTSAERVFVPNRPIIEPANAIVLEVGKVASYLDSALQALGLHVEARTSFITYWLPSLLKHKHIALRFLPQSTYEHAAPLEVDPAPDVVARIFMLFK 267
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A8H5AST4_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5AST4_9AGAR) HSP 1 Score: 158 bits (400), Expect = 5.940e-41 Identity = 103/265 (38.87%), Postives = 137/265 (51.70%), Query Frame = 1
Query: 28 VKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSALRTVPEAPT--------------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPL---------LTSAIPFGAVPYRLLRDRRSS-------TGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR 732
V+TL GKT + S+ V DIK K + E IP DQQRLL+ + L+DDLTL Y+I NGS + +L+L G K VI L+PP T L L P W FSAL P AP V A P G L ++STG E YL+WEA ++ LL P L +++ VP R + + ++ +LDRAL LGL++ R +TYWLP L + + F+ YE A L + PAPDV R+FM F+
Sbjct: 116 VRTLTGKTFGLVCKSSDCVKDIKSKIQDKEGIPADQQRLLFAERHLQDDLTLSDYHITNGSPILLILKLRGDKPVIYLFPPIATRVTTRLSLVPEWKFSALY--PIAPVTKESTGAGQRVEWIVDAEPSGILNEVSTGLEVSYLYWEAKTTSKGLLTPPASPRSSTVGLDTSVERVFVPNRPIIEPTNAIVLEVRKVASYLDRALRALGLHVEARTSFITYWLPSLLNHQHVALRFLPQSTYEHAAPLEVDPAPDVVARIFMLFK 378
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A5C2S7E1_9APHY (Ubiquitin-domain-containing protein n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2S7E1_9APHY) HSP 1 Score: 156 bits (395), Expect = 2.250e-40 Identity = 108/286 (37.76%), Postives = 141/286 (49.30%), Query Frame = 1
Query: 16 ITMFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTL-HRVLRLCGGKMVILLYPPAPV-DTTVTLELSPLWSFSALRTVPEAP------------TVHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAIPFG----------------------AVPYRLLRDRRSSTGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMNQTI 765
I + V TL GKT II+ P TV +K E IP DQQRL++ G+QLEDD TL HY I S + H VLRL GGK VI L+PP+PV TV++ L P W+FS + + +V A+P+GSL D TG E YLFWEA S P LT A+ +P+ L +LD L+ L L+ R D +TYWLP L + + F+ YE+ A+L + PAPDV RVFM FR + + + I
Sbjct: 95 IDILVVTLTGKTIIIKINPRTTVRILKSYICDKEGIPEDQQRLIFAGRQLEDDHTLSHYGIVYSSVIVHLVLRLRGGKPVIYLFPPSPVAHATVSIRLVPQWTFSHIYPPCDIKLLNDDLGQSITWSVFANPNGSLSDNRTGVELSYLFWEALSKSSIQTTPPLTPAVDASYSTTEHFDPSLPSLKPGHPTVVLLPFATLLP-------YLDTVLKSLTLHTSARNDFITYWLPALSRKPYVALRFLPQATYERAAQLEVTPAPDVVTRVFMLFRGIASEDVESDI 373
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A0B7FZ76_THACB (Polyubiquitin-C n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FZ76_THACB) HSP 1 Score: 152 bits (384), Expect = 1.970e-38 Identity = 102/270 (37.78%), Postives = 138/270 (51.11%), Query Frame = 1
Query: 22 MFVKTLAG-----KTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTT-VTLELSPLWSFSALRTVPEAPT-------------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLL---------IPLLTSAIPFGAVPYRLLRDRRS-----STGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR 732
+ VK + G KT I + PS+T+ ++K K + E P D+QRL+Y G Q+ED L YN+ +G+TLH V RL GGK VI ++PP P+D V L L W+FS + E T V A PDG L D +T RE YLFWEA ++ RLL P+ T ++ F LL + + ++D L LGL+ R +TYWLP L + + F+ YEK A L+I PAP+V RVFM FR
Sbjct: 131 ILVKKIGGEPPTPKTITIYSDPSDTIGNVKAKIQDKEGFPPDEQRLIYMGGQMEDGRALSDYNVSSGATLHLVFRLRGGKPVIYIFPPTPMDDIRVHLSLDKAWNFSEIYPPTETLTNSGKPHGQSVIWTVCAKPDGILLDQATNREVAYLFWEAHTNP-RLLPSPPGTRPNTPVETPSLAFDPADPYLLPSQSALLPFEKVTSYIDDVLLALGLHTEARTSFITYWLPNLSKHKYIALKFLPQGEYEKAAPLNITPAPEVMTRVFMLFR 399
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A146IBV7_MYCCL (Ubiquitin family protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IBV7_MYCCL) HSP 1 Score: 153 bits (387), Expect = 2.380e-37 Identity = 100/274 (36.50%), Postives = 137/274 (50.00%), Query Frame = 1
Query: 22 MFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSALRTV-----PEAPTVHAS--------PDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAIPFGAVPYR---LLRDRRSSTGV---------FLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMNQTIG 768
+FVK GKT + ++T++ IK E E IPV QQRL++HG QLEDD+ Y I ST+H VLRLCGGK +I L P +D +V + L WSFSA+ V PE +H + PDG+L D +G + YLFWEA ++ + S + P+R ++ T V +LD+ L LGL++ R +TYWLP ++ F+ YE A L + P PDV RVFM FR V M +G
Sbjct: 218 VFVKMQTGKTITLSVSSADTIMQIKTIVEEIEGIPVKQQRLIFHGTQLEDDILAADYGICKDSTVHLVLRLCGGKPIIYLRSPEELDASVQISLVSDWSFSAVYPVVPVSEPEGLRLHQTVAWSICVRPDGTLLDKDSGTDVSYLFWEALTNPPFDQLSPPPSPVVGRVEPFRPASATNAFKNETSVVLSVDAVPGYLDKVLLELGLDVEARTSFITYWLPSFLEHKHILLTFLPQAAYEVAAPLRVTPTPDVVTRVFMVFRGVERDEMGLWVG 491
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: A0A2H3CZP3_ARMGA (Ubiquitin-domain-containing protein n=1 Tax=Armillaria gallica TaxID=47427 RepID=A0A2H3CZP3_ARMGA) HSP 1 Score: 145 bits (366), Expect = 3.050e-37 Identity = 97/256 (37.89%), Postives = 135/256 (52.73%), Query Frame = 1
Query: 79 TVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDTTVTLELSPLWSFSALRT-VPEAPT---------VHASPDGSLEDLSTGREYPYLFWEADSSDGRLLIPLLTSAIPFG-----AVP-----YRLLRDRRS------STGVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKTARLSIAPAPDVTIRVFMAFR*VVTAGMNQTIG 768
+V D+K+ E E IP DQQRL++ GKQLEDD L Y I+N +T+H +RL GGK VI L+ P P++ V L + WSFSA+ VP P+ V+ D ++ D +TG YLFWEA+++ G L P S+ G A+P L D S T ++LD+AL LGL++ R +TYWLP + F + F+ YE A L + P PDV RVFM F+ V +++ G
Sbjct: 6 SVFDVKELVEFTEGIPPDQQRLIFGGKQLEDDRQLSDYGIKNEATIHLAVRLRGGKPVIYLFTPHPLNAVVRLSIVKAWSFSAVYPGVPIKPSESGQSIEWNVNTHEDHTMTDTATGVRVSYLFWEAETNPG--LPPSPPSSPRLGQSHSDAIPRFDPLMAELTDTNSVVLPTSKTTLYLDKALTALGLHIEARTSFITYWLPSILKHDFVALRFLPQVSYEHAAPLDVEPKPDVVTRVFMLFKRVCDDELDEWEG 259
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Match: M7XCE8_RHOT1 (Ubiquitin family protein n=1 Tax=Rhodosporidium toruloides (strain NP11) TaxID=1130832 RepID=M7XCE8_RHOT1) HSP 1 Score: 147 bits (370), Expect = 1.000e-36 Identity = 102/268 (38.06%), Postives = 140/268 (52.24%), Query Frame = 1
Query: 16 ITMFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDDLTLRHYNIQNGSTLHRVLRLCGGKMVILLYPPAPVDT-TVTLELSPLWSFSALRTVPEAP-----------TVHASPDGSLEDLSTGREYPYLFWEAD------SSDGRLLI----PLLTS----AIPFGAVPYRLLRDRRSSTGVFLDRALERLGLNMRERCDMVTYWLP---QLESSAFNVIY-FVDVERYEKTARLSIAPAPDVTIRVFMAF 729
I +FVKTL G+T + P ++ ++D E I QQRL++ GKQLE+ TL Y I STLH +LRL GGK VI L+PP P+D+ +V+L L+P W FSAL V TV A PDGSL DL++G E YLFWEA+ S+ L+ PLL + A+PF A LD+ L L L+ R D +TYWL ++ + ++ + F+ + YE+ L + P PDV RVF+ F
Sbjct: 117 IQIFVKTLTGRTITLEVLPDASLESVRDMIRDVEGISPCQQRLIFAGKQLENGHTLADYQIAKDSTLHLLLRLTGGKPVIYLFPPTPLDSASVSLTLTPEWHFSALYPVVHPVEGGNGETRASWTVSAQPDGSLVDLASGLELKYLFWEAEAYKTTSSAPSHLVFDPSNPLLDASNGCALPFAAFL------------AHLDQTLAALSLHTAARNDFITYWLSHFTRIRDAGQHIGFRFLAQDDYERATHLDVNPMPDVVTRVFLLF 372 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15515.4109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15515.4109.1 >prot_Ecto-sp13_S_contig15515.4109.1 ID=prot_Ecto-sp13_S_contig15515.4109.1|Name=mRNA_Ecto-sp13_S_contig15515.4109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp MFVKTLAGKTHIIRAFPSETVLDIKDKSERAEDIPVDQQRLLYHGKQLEDback to top mRNA from alignment at Ecto-sp13_S_contig15515:2090..3760+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15515.4109.1 ID=mRNA_Ecto-sp13_S_contig15515.4109.1|Name=mRNA_Ecto-sp13_S_contig15515.4109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1671bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15515:2090..3760+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15515:2090..3760+ >mRNA_Ecto-sp13_S_contig15515.4109.1 ID=mRNA_Ecto-sp13_S_contig15515.4109.1|Name=mRNA_Ecto-sp13_S_contig15515.4109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15515:2090..3760+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |