mRNA_Ecto-sp13_S_contig15510.4107.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig15510.4107.1
Unique Name	mRNA_Ecto-sp13_S_contig15510.4107.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15510.4107.1 vs. uniprot
Match: D8LBI3_ECTSI (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 5.440e-103
Identity = 245/262 (93.51%), Postives = 249/262 (95.04%), Query Frame = 1

Query:   13 MLLGRVGTLLPSCGGRVATRRFLAKKXXXXXXXXKKGSGTPKKGPAAIKARGAMPVSKAGKQGSNTGKSGAAXAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASVTAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKGHGKWGWGTRLLAGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWALYSSPVKEKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKG 798
            MLLGRVGTLLPSC GRVATRRFLAKKXXXXXXXXKKGSGTPKKGPAAIKARGAMPVSKAGKQGS TGK+G A AREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASVTAKT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       WGWGT+L+AGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWALYSSPVK+KLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKG
Sbjct:    1 MLLGRVGTLLPSCSGRVATRRFLAKKXXXXXXXXKKGSGTPKKGPAAIKARGAMPVSKAGKQGSKTGKTGGAAAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASVTAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGWGTKLVAGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWALYSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKG 262

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BLAST of mRNA_Ecto-sp13_S_contig15510.4107.1 vs. uniprot
Match: A0A6H5KLZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ0_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 1.370e-71
Identity = 196/219 (89.50%), Postives = 197/219 (89.95%), Query Frame = 1

Query:   13 MLLGRVGTLLPSCGGRVATRRFLAKKXXXXXXXXKKGSGTPKKGPAAIKARGAMPVSKAGKQGSNTGKSGAAXAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASVTAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKGHGKWGWGTRLLAGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWAL 669
            MLLGRVGTLLPSCGGR+ATRRFLAKK        KKGSGTPKKGPAAIKARGAM VSKAGKQGSNTGKSG AXAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKAR        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KG GKWGWGTRLLAGTSVGLAA GIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWAL
Sbjct:    1 MLLGRVGTLLPSCGGRLATRRFLAKKAAGRGGGGKKGSGTPKKGPAAIKARGAMSVSKAGKQGSNTGKSGGAXAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGQGKWGWGTRLLAGTSVGLAAFGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWAL 219

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15510.4107.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15510.4107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LBI3_ECTSI	5.440e-103	93.51	Mitochondrial import inner membrane translocase su...	[more]
A0A6H5KLZ0_9PHAE	1.370e-71	89.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15510	contig	Ecto-sp13_S_contig15510:1542..4109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	325.1
Seed ortholog evalue	3e-86
Seed eggNOG ortholog	2880.D8LBI3
Preferred name	TIMM50
Model size	801
KEGG ko	ko:K17496
KEGG TC	3.A.8.1
Hectar predicted targeting category	mitochondrion
GOs	GO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
Exons	3
EggNOG free text desc.	phosphoprotein phosphatase activity
EggNOG OGs	COG5190@1,KOG2832@2759
Ec32 ortholog description	Tim50 homolog, mitochondrial inner membrane protein of TIM23 complex
Ec32 ortholog	Ec-27_003880.1
Cds size	789
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko02000,ko03029

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462823.0682545-UTR-Ecto-sp13_S_contig15510:1541..1553	1681462823.0682545-UTR-Ecto-sp13_S_contig15510:1541..1553	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig15510 1542..1553 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462823.0782096-CDS-Ecto-sp13_S_contig15510:1553..1588	1681462823.0782096-CDS-Ecto-sp13_S_contig15510:1553..1588	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15510 1554..1588 +
1681462823.086088-CDS-Ecto-sp13_S_contig15510:2821..3443	1681462823.086088-CDS-Ecto-sp13_S_contig15510:2821..3443	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15510 2822..3443 +
1681462823.093937-CDS-Ecto-sp13_S_contig15510:3977..4109	1681462823.093937-CDS-Ecto-sp13_S_contig15510:3977..4109	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15510 3978..4109 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15510.4107.1	prot_Ecto-sp13_S_contig15510.4107.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig15510 1554..4109 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig15510:1542..4109+
coding sequence from alignment at Ecto-sp13_S_contig15510:1542..4109+

protein sequence of mRNA_Ecto-sp13_S_contig15510.4107.1

>prot_Ecto-sp13_S_contig15510.4107.1 ID=prot_Ecto-sp13_S_contig15510.4107.1|Name=mRNA_Ecto-sp13_S_contig15510.4107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp
MLLGRVGTLLPSCGGRVATRRFLAKKAAGGGGGGKKGSGTPKKGPAAIKA
RGAMPVSKAGKQGSNTGKSGAAAAREAAATTTSTAKAAAAEAAESAKPPP
VGGGGGFTKSEMLAARKARKASVTAKTAAAAATAKAVAPAAAAGAGRAGG
AGAAASAAEAGGAKGHGKWGWGTRLLAGTSVGLAALGIAWQLKPDEMRKL
LDDSPIDHFFIWFMGKWALYSSPVKEKLLLDCPLPPGALPPPTLVLDLEG
TLLGTIYTRKKG*

mRNA from alignment at Ecto-sp13_S_contig15510:1542..4109+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig15510.4107.1 ID=mRNA_Ecto-sp13_S_contig15510.4107.1|Name=mRNA_Ecto-sp13_S_contig15510.4107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2568bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15510:1542..4109+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAGATACACGATGCTTCTCGGACGCGTTGGCACGCTTCTCCCGAGGTG
AGTTGCCTGTGTGGGGATTGCTTTCACGACAAAAGTGTGTGCTCTCTCCC
GATGATGATCGATCATCTCTGCCCCTGTGGACGCGGAAATAGGACGTCCG
TGAGAGGTCCACCAGCTAATCGAAATCCAAATACAGGGGTGGCGTGAAAA
ACGTTAAGTGTGTGAAGACGGTTTTTCATTCGAATGAAGGCTAGCAGAGT
TTCCTACTTTTTCCGAAGTTTATAGTTTTGGTGCCTACTTGCTGTGTGTC
AACAGCAGCAGGGAACAAATGCACCTGCGGCTGTACGCTCGCGATTGCAT
TTTTCCGCGCACGATACCTAGCAGCAGCTGTGGCTCGTTCAAGGGCTAAC
CGGCAGCAGTGGTTAACAAACTCAAGTATCAGCTCTCTAGCAATATAAGT
CGAAAAGCTCTTGGTTGCAACTTCACCTTACAGCAGTGGACGCGTTCCCG
ATGTGGGGCAGGCATGTCTGCAGAAAATTACAGAACTCACAAGCATGATT
TGTTTCGACGCGACTCGCGTCCATATTCGAATCACAGATCTACCTCCTGT
GCATTACGGGTACACGCTACTCCAAAATGTGGATGGCATGCAGCGTGGTA
GACGAATAATCTATCGCAATGATTGCGTTCGTCGCTCATAGTATGTAGCA
CACGACGACCTTGTAGATACCCTGCGCAGACACGCTAGATAGTGTTTGGC
GTATTCAATATTGCAAGTATTGCGGTGTCCAGGCGCAACAACTTCCCGTC
TGCAGGGAACATGTTGTGGACCAACACCTAATGTCCTTCTCGGTTCTAAG
AGCGGCGTTGTAGCGGTGCTGAACAACGCTTGGCCGAAGCAGCTACATAG
GATATGGGCGAACATACGCCGCGCCCGGCATGCGCAAATGCTGCGCCCGG
CCCGAGCACCTTCGGGCGGTGTGCAGGACGCTCCTACGCTCGTACGGTCA
TCAAACTCAGTAGATAACACCAGACCATTCTCAGGTTGTCAGGCTCCAAA
GTGCATCATCGCTTGGAGCCTGTTGAACAAGGAACATGGTATACGACGGC
AGTTGTCCCCCGCACCCACCAGGGATCGAACATACGGGGTAAGTATCCCG
GTCTTATGTTGCCTTCCCGCCCTAGACTTGTACTCTCTCTCCCCCTCCCG
CCCCAACTTGGCCCACGCTTCCCCTCGATTTTCGCTATCTCCCCGTCCCC
GTATCCCGGCTACGTACCCCCCCTAAGTAGCTGCGGTGGCAGGGTAGCCA
CACGACGCTTTCTTGCCAAGAAAGCCGCAGGGGGGGGAGGAGGAGGGAAG
AAGGGGAGTGGGACGCCCAAAAAGGGACCGGCGGCGATAAAAGCCAGAGG
GGCAATGCCGGTGTCGAAGGCGGGAAAGCAAGGCAGCAACACCGGCAAAA
GCGGCGCCGCAGCAGCAAGAGAAGCAGCGGCGACGACAACAAGCACGGCG
AAGGCCGCAGCAGCAGAGGCAGCGGAAAGCGCAAAGCCGCCACCTGTAGG
GGGCGGCGGTGGTTTCACGAAGAGCGAGATGCTTGCCGCAAGGAAGGCCA
GAAAAGCTAGCGTCACTGCGAAGACGGCGGCTGCTGCTGCGACTGCGAAA
GCGGTCGCGCCTGCCGCGGCTGCGGGAGCCGGTCGGGCAGGCGGCGCGGG
AGCAGCGGCAAGCGCGGCAGAGGCGGGAGGGGCGAAGGGGCACGGGAAGT
GGGGTTGGGGGACCAGGCTCCTCGCGGGGACGTCGGTGGGGCTGGCGGCG
TTGGGGATCGCTTGGCAGCTGAAGCCTGACGAGATGAGGAAGCTGCTGGA
CGACAGTCCCATCGACCACTTCTTCATTTGGTTCATGGGCAAGTGGGCAC
TGGTGAGAGGGACCCTCCCTTGTGTTTCGTCTCCACAGAAGGCATTATTC
GTACTTCCAGTAGTTTTTTTCTGGGAAGGGGGGGTGCGTTTTGTATACTA
GCAAGATGAGTGCGCTTTAGGTGTGGTCGTCAGCTTTCACGCGTTTTTTT
TTCGTTTGCTGGCATGGGCCAGCATGGTCAATCGGGGGGGTGACTTGGAG
TCACGCTTTATTTGGTGGTGGTGATCGGTTATTTGGTCGCAGCAACGATG
CCGGCAGGGGTGAGCCCTGGATCTTAGGCACTGGTACAGAAGCCTACAAG
GCGATGCGATGACCTTGCACGGCCACAATACCTCCAAGCCTGTTTGCCAT
TGATTGTTACTCTGTATTGTTGATATTCCATGGTTGTATGAGATGTACCC
AGAGGCTTCAAACAGAGCACCTCTGGTCCGTCGAATCACTACTCGCCCAT
CGGAGTCGTCGGTCAATTATTTGCCTGCCTCGATGGATCCTTGGATTTTG
TTTGTGCGTGTTTCACCCCCCCCTCCCCTTCCCTAGTACTCGAGCCCCGT
GAAAGAGAAGCTCCTGCTAGACTGCCCGCTGCCCCCGGGAGCGTTGCCGC
CCCCGACGCTTGTGCTGGACCTTGAGGGAACCCTCCTCGGCACCATCTAC
ACCCGTAAGAAAGGGTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15510:1542..4109+

>mRNA_Ecto-sp13_S_contig15510.4107.1 ID=mRNA_Ecto-sp13_S_contig15510.4107.1|Name=mRNA_Ecto-sp13_S_contig15510.4107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15510:1542..4109+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCTCGGACGCGTTGGCACGCTTCTCCCGAGCTGCGGTGGCAGGGT
AGCCACACGACGCTTTCTTGCCAAGAAAGCCGCAGGGGGGGGAGGAGGAG
GGAAGAAGGGGAGTGGGACGCCCAAAAAGGGACCGGCGGCGATAAAAGCC
AGAGGGGCAATGCCGGTGTCGAAGGCGGGAAAGCAAGGCAGCAACACCGG
CAAAAGCGGCGCCGCAGCAGCAAGAGAAGCAGCGGCGACGACAACAAGCA
CGGCGAAGGCCGCAGCAGCAGAGGCAGCGGAAAGCGCAAAGCCGCCACCT
GTAGGGGGCGGCGGTGGTTTCACGAAGAGCGAGATGCTTGCCGCAAGGAA
GGCCAGAAAAGCTAGCGTCACTGCGAAGACGGCGGCTGCTGCTGCGACTG
CGAAAGCGGTCGCGCCTGCCGCGGCTGCGGGAGCCGGTCGGGCAGGCGGC
GCGGGAGCAGCGGCAAGCGCGGCAGAGGCGGGAGGGGCGAAGGGGCACGG
GAAGTGGGGTTGGGGGACCAGGCTCCTCGCGGGGACGTCGGTGGGGCTGG
CGGCGTTGGGGATCGCTTGGCAGCTGAAGCCTGACGAGATGAGGAAGCTG
CTGGACGACAGTCCCATCGACCACTTCTTCATTTGGTTCATGGGCAAGTG
GGCACTGTACTCGAGCCCCGTGAAAGAGAAGCTCCTGCTAGACTGCCCGC
TGCCCCCGGGAGCGTTGCCGCCCCCGACGCTTGTGCTGGACCTTGAGGGA
ACCCTCCTCGGCACCATCTACACCCGTAAGAAAGGGTGA