mRNA_Ecto-sp13_S_contig15505.4106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15505.4106.1
Unique NamemRNA_Ecto-sp13_S_contig15505.4106.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15505.4106.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 6.580e-54
Identity = 150/167 (89.82%), Postives = 152/167 (91.02%), Query Frame = 2 
Query:    2 ARDAAAIEQLMEAVLLKEKQETEKAKARAVEEAKLAKEEPARDAGTTLSSTKPGDNRRPSPTARNASGWKPATTXXXXXXXXXXXXXXXXXXXXSSTAVGRGSSPEAPSPSDGNPFTVPGAAGTXXXXXXXXXXXXXTTAAGVPPHPTAEPRDSGVNNGLDTASGGG 502
            ARDAAAIEQLMEAVL KEKQETEKAKARAVEEAKLAKEEPAR+AGTTLSST PGDNRRPSPTARNASG KPA  XXXXXXXXXXXXXXXXXXXXSST  GRG SPE PSPSDGNPFTVPGAAGT XXXXXXXXXXXX  A GVPPHPTAEPRDSG N+GLDT SGGG
Sbjct:  363 ARDAAAIEQLMEAVLTKEKQETEKAKARAVEEAKLAKEEPARNAGTTLSSTNPGDNRRPSPTARNASGRKPAXXXXXXXXXXXXXXXXXXXXXXSSTPAGRGPSPEVPSPSDGNPFTVPGAAGTVXXXXXXXXXXXXXXA-GVPPHPTAEPRDSGGNSGLDTGSGGG 528
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15505.4106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP69_ECTSI6.580e-5489.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15505contigEcto-sp13_S_contig15505:33..1373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score181.4
Seed ortholog evalue3.2e-43
Seed eggNOG ortholog2880.D7FP69
Preferred nameTMCO4
Model size502
KEGG koko:K14773
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
Exons2
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGsKOG2385@1,KOG2385@2759
Cds size471
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.0262241-UTR-Ecto-sp13_S_contig15505:32..631681462823.0262241-UTR-Ecto-sp13_S_contig15505:32..63Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15505 33..63 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.0358477-CDS-Ecto-sp13_S_contig15505:63..1111681462823.0358477-CDS-Ecto-sp13_S_contig15505:63..111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15505 64..111 +
1681462823.0436482-CDS-Ecto-sp13_S_contig15505:950..13731681462823.0436482-CDS-Ecto-sp13_S_contig15505:950..1373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15505 951..1373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15505.4106.1prot_Ecto-sp13_S_contig15505.4106.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15505 64..1373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15505.4106.1

>prot_Ecto-sp13_S_contig15505.4106.1 ID=prot_Ecto-sp13_S_contig15505.4106.1|Name=mRNA_Ecto-sp13_S_contig15505.4106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
MEAVLLKEKQETEKAKARAVEEAKLAKEEPARDAGTTLSSTKPGDNRRPS
PTARNASGWKPATTTSAFRQGGDDRMPSPAATNASSTAVGRGSSPEAPSP
SDGNPFTVPGAAGTVAPAAAAVAPIAATTAAGVPPHPTAEPRDSGVNNGL
DTASGGG
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mRNA from alignment at Ecto-sp13_S_contig15505:33..1373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15505.4106.1 ID=mRNA_Ecto-sp13_S_contig15505.4106.1|Name=mRNA_Ecto-sp13_S_contig15505.4106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15505:33..1373+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGAGGGATGCGGCGGCTATCGAGCAGCTCATGGAGGCCGTGTTGTTGA
AGGAGAAGCAGGAGACGGAGAAGGCCAAGGTCGGTCGTGGGGTACCTACC
TACCGCATGTTGCCTAAGATACCACACCCCCAGAACCGACTTTTAACGCT
CGATTTTCTCTATGTAGTGCAAAGAGGATGCCAAGATCAAATGACATGTA
TTTCGGAAAGCGTTGATACGGTAGTTCCAACGTTGCAATTTTCGGCACCG
CCAGGGTTTTGGCTGGAGAGAAATCGATCGGTGCTTGGAAATTGTCCAGG
GGGATGTGATATCCTTAACAACTTACGCTAGAATAACTGCTTGGTTTATG
CACATCCGGTCGTGATACCGATCTGTGGGGCCTCTTCTTGGATGGGGGTC
TATGATACTGGAGATTTCGGTGCGTCGAAGCCCCTCGTTGCTCCGTGTCT
CCGTTTGTCGCCCACACCCTCTCTCTCTCTCTCTCGTGGCGGTGACTGTG
GACAATACAACACAAATCCGTTCGAGTCACTTGGGTTCTTGGCTTGTGCT
CTCGATACGTTCAACGGAGCTCACCTGACACCCCCCGGTAATTTATAGAC
AGCAGACAGCCTCGCGGGCTTTACCCAGAGACCGACTCGGGGCTTCTGCT
GGTGCATAGAATCATTCAATCAATCAATCCACCGCCGCTGCTGGGCGGAG
GCAGGTCCAGTGCTTGCCGCAGAGGAGGGGGGGGGTTCCCTGCCACTACC
GCGGTAAAAATCAGCCGTTGCGTGCTTCTTTCGCCCCAACGTTTTTCTTT
CTGCGGTCGCCGGCTGCACCGCGGGCGTCAATAGCAAATTAGCACATCAC
GTTTTGCTTTTGGTGACACGCGCTGATATTTTGTTGGACGACTTTCTCGG
CATTCGGGGACAAACCAGGCCAGGGCTGTGGAAGAAGCCAAGCTCGCCAA
GGAGGAGCCTGCCAGAGACGCCGGAACGACCCTTTCTTCTACAAAACCCG
GGGACAACAGGAGACCATCCCCTACCGCAAGGAATGCCTCTGGGTGGAAA
CCCGCGACAACGACCTCAGCCTTCCGGCAAGGAGGGGATGATCGTATGCC
ATCTCCTGCTGCCACAAACGCCTCCAGCACTGCAGTAGGAAGAGGTTCGA
GCCCCGAAGCCCCCTCGCCATCGGACGGCAATCCTTTCACGGTCCCAGGA
GCGGCGGGCACCGTGGCGCCCGCCGCCGCCGCAGTGGCGCCCATAGCAGC
AACCACCGCCGCAGGAGTACCGCCGCACCCCACCGCCGAGCCCCGGGATT
CAGGGGTGAACAACGGATTGGACACCGCAAGCGGTGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15505:33..1373+

>mRNA_Ecto-sp13_S_contig15505.4106.1 ID=mRNA_Ecto-sp13_S_contig15505.4106.1|Name=mRNA_Ecto-sp13_S_contig15505.4106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15505:33..1373+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCCGTGTTGTTGAAGGAGAAGCAGGAGACGGAGAAGGCCAAGGC
CAGGGCTGTGGAAGAAGCCAAGCTCGCCAAGGAGGAGCCTGCCAGAGACG
CCGGAACGACCCTTTCTTCTACAAAACCCGGGGACAACAGGAGACCATCC
CCTACCGCAAGGAATGCCTCTGGGTGGAAACCCGCGACAACGACCTCAGC
CTTCCGGCAAGGAGGGGATGATCGTATGCCATCTCCTGCTGCCACAAACG
CCTCCAGCACTGCAGTAGGAAGAGGTTCGAGCCCCGAAGCCCCCTCGCCA
TCGGACGGCAATCCTTTCACGGTCCCAGGAGCGGCGGGCACCGTGGCGCC
CGCCGCCGCCGCAGTGGCGCCCATAGCAGCAACCACCGCCGCAGGAGTAC
CGCCGCACCCCACCGCCGAGCCCCGGGATTCAGGGGTGAACAACGGATTG
GACACCGCAAGCGGTGGCGGC
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