mRNA_Ecto-sp13_S_contig1550.4102.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1550.4102.1
Unique NamemRNA_Ecto-sp13_S_contig1550.4102.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1550.4102.1 vs. uniprot
Match: A0A6H5L2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U9_9PHAE)

HSP 1 Score: 757 bits (1955), Expect = 6.770e-258
Identity = 401/454 (88.33%), Postives = 409/454 (90.09%), Query Frame = 1 
Query:    1 MTAAGDFPSLASPSRWQGGGCSSPGVKRRYNNTRSNRARCRQSSSATGIR---NPRALFPVSDDFIRSAWVRRDRTQRAQEYEELFPYFSRRSSTAPFLNDRTTASQTAAAGTPAARPAAHETQGGRLSPDRHQRGPGASSTKDLPTAGEAATTPISRGCARSRRHMGVRTGSGNVAELRRAFRRLEPENMFRAPWVDGEPIWAYWGDGKGGGGEGGHAHGDPQPPLPPGRRASTKDGFVLVPAKELTELRAIEGVLRKERGVLNAHCLVEFNEGEVSAHRPLELTRMAVHDACGSEMADALREYRAWTARSRSRGDGGREKRSSSTAPCSAPTRGNRSTVMSAGGCGKRSRATASQARVAELQRTPTGWRTLRWVMMKRQAELKSQAMEAAAMFAEEREQRLKERFLEAWERRHDYDLYCVLAGQFWPLDAQAFRACSRPGRKLFLEIEAPAR 1353
            MTAAGDFPSL SPSRWQGGGCSSPGVKR YNNTRSNRARC  SSSATGI    NPRALFPV DDFIRSAWVRRDRTQRAQEYEEL+P F RRSST P LNDRTTASQTAAAGTPA RPAA ETQ GRL+PDRHQRGPGA  TKDL TAGEAATTPISRGCARSRRHMGV TGSGN+AELRRAFRRLEPENMFRAP VDGEPIWAYWGDGK               PLPPG+RASTKDGFVLVPAKELTELRAIEGVLRKERGVLNAHCLVEFNEGEVSAHRPLELTRMAVHDACGSEMA+ALREYRAWTARSRSRGDGGREKR SSTAP SA TRGNRSTVMS GGCGK SRA ASQARVAELQRTP GWR+LRWVMMKRQAELKSQAMEAAAMFAEEREQRLKERFLEAWERRHDYDLYCVLAGQFWPL+A  FRACSRPGRKLFL+IEAPAR
Sbjct:    3 MTAAGDFPSLVSPSRWQGGGCSSPGVKRPYNNTRSNRARCSHSSSATGIMWVANPRALFPVRDDFIRSAWVRRDRTQRAQEYEELYPCFFRRSSTGPLLNDRTTASQTAAAGTPATRPAARETQAGRLAPDRHQRGPGAPYTKDLATAGEAATTPISRGCARSRRHMGVGTGSGNIAELRRAFRRLEPENMFRAPRVDGEPIWAYWGDGKXXXXXXXXXXXXXXXPLPPGKRASTKDGFVLVPAKELTELRAIEGVLRKERGVLNAHCLVEFNEGEVSAHRPLELTRMAVHDACGSEMANALREYRAWTARSRSRGDGGREKRGSSTAPRSALTRGNRSTVMSTGGCGKHSRAAASQARVAELQRTPAGWRSLRWVMMKRQAELKSQAMEAAAMFAEEREQRLKERFLEAWERRHDYDLYCVLAGQFWPLEAHVFRACSRPGRKLFLDIEAPAR 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1550.4102.1 vs. uniprot
Match: D8LGM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM7_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 1.180e-101
Identity = 190/305 (62.30%), Postives = 192/305 (62.95%), Query Frame = 1 
Query:  490 MGVRTGSGNVAELRRAFRRLEPENMFRAPWVDGEPIWAYWGDGKGGGGEGGHAHGDPQPPLPPGRRASTKDGFVLVPAKELTELRAIEGVLRKERGVLNAHCLVEFNEGEVSAHRPLELTRMAVHDACGSEMADALREYRAWTARSRSRGDGGREKRSSSTAPCSAPTRGNRSTVMSAGGCGKRSRATASQARVAELQRTPTGWRTLRWVMMKRQAELKSQAMEAAAMFAEEREQRLKERFLEAWERRHDYDLYCVLAGQFWPLDAQAFRACSRPGRKLFLEIEAPARVIMRMWMTCWPFRKARN 1404
            MGV TGSGNVAELRRAFRRLEPENMFRAP VDGEPIWAYWGDGKGG GEGGHAHG PQPPLPPG+RASTKDGFVLVPAKELTELRAIEGVLRKERGVLNAHCLVEFNEGE                                                                                                         AELKSQAMEAAAMFAEEREQRLKERFLEAWERRHDYDLYCVLAGQFWPL+AQAFRACSRPGRKLFLEIEAPARVIMRMW T WPFRK R 
Sbjct:    1 MGVGTGSGNVAELRRAFRRLEPENMFRAPRVDGEPIWAYWGDGKGGRGEGGHAHGQPQPPLPPGKRASTKDGFVLVPAKELTELRAIEGVLRKERGVLNAHCLVEFNEGE---------------------------------------------------------------------------------------------------------AELKSQAMEAAAMFAEEREQRLKERFLEAWERRHDYDLYCVLAGQFWPLEAQAFRACSRPGRKLFLEIEAPARVIMRMWRTYWPFRKDRK 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1550.4102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2U9_9PHAE6.770e-25888.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGM7_ECTSI1.180e-10162.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1550contigEcto-sp13_S_contig1550:7805..11003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1416
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-10_002830.1
Cds size1416
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.7414482-CDS-Ecto-sp13_S_contig1550:7804..79531681462822.7414482-CDS-Ecto-sp13_S_contig1550:7804..7953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1550 7805..7953 +
1681462822.7537658-CDS-Ecto-sp13_S_contig1550:8500..91701681462822.7537658-CDS-Ecto-sp13_S_contig1550:8500..9170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1550 8501..9170 +
1681462822.7645087-CDS-Ecto-sp13_S_contig1550:9397..97861681462822.7645087-CDS-Ecto-sp13_S_contig1550:9397..9786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1550 9398..9786 +
1681462822.772674-CDS-Ecto-sp13_S_contig1550:10795..110031681462822.772674-CDS-Ecto-sp13_S_contig1550:10795..11003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1550 10796..11003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1550.4102.1prot_Ecto-sp13_S_contig1550.4102.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1550 7805..11003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1550.4102.1

>prot_Ecto-sp13_S_contig1550.4102.1 ID=prot_Ecto-sp13_S_contig1550.4102.1|Name=mRNA_Ecto-sp13_S_contig1550.4102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=472bp
MTAAGDFPSLASPSRWQGGGCSSPGVKRRYNNTRSNRARCRQSSSATGIR
NPRALFPVSDDFIRSAWVRRDRTQRAQEYEELFPYFSRRSSTAPFLNDRT
TASQTAAAGTPAARPAAHETQGGRLSPDRHQRGPGASSTKDLPTAGEAAT
TPISRGCARSRRHMGVRTGSGNVAELRRAFRRLEPENMFRAPWVDGEPIW
AYWGDGKGGGGEGGHAHGDPQPPLPPGRRASTKDGFVLVPAKELTELRAI
EGVLRKERGVLNAHCLVEFNEGEVSAHRPLELTRMAVHDACGSEMADALR
EYRAWTARSRSRGDGGREKRSSSTAPCSAPTRGNRSTVMSAGGCGKRSRA
TASQARVAELQRTPTGWRTLRWVMMKRQAELKSQAMEAAAMFAEEREQRL
KERFLEAWERRHDYDLYCVLAGQFWPLDAQAFRACSRPGRKLFLEIEAPA
RVIMRMWMTCWPFRKARNGRH*
back to top

mRNA from alignment at Ecto-sp13_S_contig1550:7805..11003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1550.4102.1 ID=mRNA_Ecto-sp13_S_contig1550.4102.1|Name=mRNA_Ecto-sp13_S_contig1550.4102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3199bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1550:7805..11003+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTGCAGGCGATTTTCCATCCCTGGCATCACCGTCTCGATGGCA
AGGTGGCGGGTGTTCATCGCCCGGGGTGAAACGTCGATACAACAACACCC
GATCAAACCGCGCACGATGTCGCCAGAGCAGCAGTGCAACCGGAATCAGG
TGGGCTGCGTGTATTCATTTTCATTTCTCGGCGCACAACATGCAGGTCCT
AGATAGGAGTGGAGTAACGAAACAAGTCTTCGACTTTTGGTTCCCAAGGA
GGGAATCTTAGATCCTGCAGCCTTCGTTCATCAGCGACAGAGTTGTCGCC
GTCTCCGACATGTCGGTACCTGCAGTAGTCCGGTGCCACAGAAACCCTTT
TGTCGGAGGGTGTACATACCTCATGCGTTTTTGACAGCCACACAAAGGTG
ATCATGGATTCCAATCCACGATTTCTGCTTAAATGTGTCCTGATTGTCGG
AGAACCATCTGGTACTTGGCAAATGGCGAGATAGTCCATCGTTGTCGTCA
GTGCACGTTCCGTTCGTCTCCATCACTCAGCTATTTACGTGCTATGATTG
CAGGTGTTGGCGAATTGGAACCTCACAAAACTATGAATTTACTCTACTGC
AGTGTACCAATCCCTTTCCATCCCCGCGCACTATGTAGATACATGCATAC
TCGTCCATTCGCATTCGTGTACGGGGGGTTGAACGACTTTGAACAGGAAC
CCTCGGGCGCTGTTTCCCGTCAGCGACGACTTCATCCGGTCGGCGTGGGT
GCGGCGAGATCGCACCCAGCGCGCGCAGGAGTACGAGGAGCTTTTCCCCT
ACTTCTCTCGCCGTTCTTCGACAGCGCCCTTCCTGAACGACAGGACAACC
GCCTCGCAAACTGCCGCTGCTGGTACTCCCGCGGCACGACCAGCAGCGCA
TGAGACTCAAGGGGGAAGGCTTTCCCCCGACCGACACCAGCGAGGACCGG
GCGCATCATCCACAAAGGACCTTCCTACGGCAGGCGAAGCAGCCACGACA
CCAATATCGCGCGGCTGCGCGCGGAGTCGGCGGCACATGGGAGTGAGGAC
TGGTTCCGGGAACGTTGCCGAGTTGCGACGGGCCTTTCGCCGGCTCGAGC
CCGAGAACATGTTTCGCGCTCCCTGGGTTGACGGGGAGCCGATATGGGCT
TACTGGGGGGACGGCAAAGGGGGAGGAGGAGAGGGCGGTCACGCCCATGG
GGATCCCCAGCCGCCACTTCCCCCAGGGAGACGCGCGAGCACGAAGGATG
GGTTTGTTCTGGTGCCAGCGAAAGAACTGACGGAACTGAGGGCCATCGAG
GGCGTACTGAGGAAAGAGCGAGGCGTCCTAAACGCACACTGTCTTGTCGA
GTTCAACGAGGGCGAGGTTTGTACTTCGTGGAGATTTTCGAGACTTTGAG
CTGGTGAACTTGTTGATCGTTCCGTCGTAGCCATTTCTGTTCGTGGAAGG
ATTTGCCCGGGTCTGTATGATCGCTTTACGTTGCCTGTTCTACTCACGCT
AGAACACCGCCACTACCACCAACAACACATGAACAATATCAAGGAAACAG
CGACATGGACAACAGCAGCCAACCCCGACGTCCCACTCACCAGGTTAGCG
CGCACCGTCCACTAGAGCTGACCCGCATGGCCGTCCACGATGCTTGCGGC
AGCGAAATGGCCGACGCTTTGCGCGAATATCGCGCATGGACCGCTCGCAG
TCGCAGCAGGGGTGACGGCGGCAGAGAAAAGCGGAGCAGCAGCACCGCAC
CATGCTCTGCTCCAACACGAGGTAACAGGTCGACAGTGATGTCTGCGGGC
GGCTGCGGGAAGCGTTCTCGCGCTACCGCATCGCAAGCGAGGGTTGCCGA
GCTGCAGAGGACGCCGACCGGGTGGCGGACGCTGCGGTGGGTGATGATGA
AACGCCAGGCCGAGTTGAAGAGCCAGGCGATGGAAGCAGCGGCGATGTTC
GCCGAGGAAAGGGAGCAGCGCCTCAAAGAAAGGTGGGGTTGACAAATTCG
ACCGGGGCGCAAGGTACACAGCAGTTGGGCACCACCAGACTTTCCTCTTG
ACTTTTTTGAGGAAAAGGGAAAGTTGTTGGGGTCCCAGTGAGCTAACTGC
AGCGTTTTAGCACACCACGGTGACAACATTGTTAAAGCAGCTTCGGAGGC
TACCGCTTGATACCGGGATCCTAAAGCGCTTATTTGGAGGAACTTCGACT
TACAGTCATTTTCACATCTAGAAGAGGTGTGAGGTTAACATGTATGTTAG
TTCCTTAAGCCTCTGATGAAACTTCATGTTGTTGGCTACCCTCTTTGAAC
AGCAGTGCTTGCCGGTGCAGGTTGTTCTTCTTTAGTAAACTGAACAAGAG
CGGCGGTTCCGCCCACAAAGAGGGGCCGTATTAGCCTGATCCCAAGGAGT
TGTAGTTCCCGCCACAACCTGTTCATGCTTCCCTAGGTTCACCGTTCAGG
TTCTTACCTCTCAGATGCTATAAAGGACAAACGGGTACTCGATAAGCAAG
GTTTCTAGAAGAAGAGTATTTTCGCTGGCTGTTACCTCCCTTCGCTTTAG
ATAATCCTGATCACTGACTTCTCACATACGACACTGAGCTGATCCGTGAT
GGGCCAAGAGTGCTACCATGTTGGTCGTCGTTGGGCAGCCGACCGTGCAT
TTTTGCGGCTTCCATCTCAACGTTCGTTGTTTTGTCTGGTGGAGGGCGCG
CATGTTCGATTTGAGTCTTTATTCGGGGCGAGTGAGTATGGGAAGCGTTT
CGACTTCCTCCATTGATGATATTTCCAGAGCATACAACGAATGATCACCA
CGGTCCCCAACGAGACAACCTAGCTTGAGTGAGAATCGTACGTTGCGGCC
ATTCCCTGCTTTTTCTCCATGCAGGTACTCCTAGCCGATGCCTTCATTTT
GGACAGGTTATAGTACAAAAGTCATTGTCACGTTTCTCAAGCTTCGAAAG
GTGTCTGTTGCTGGCTCACGGTGAACAAACAAAAAAATCAGGTTCTTGGA
GGCGTGGGAGAGGCGGCATGACTACGACCTCTACTGCGTTTTGGCGGGAC
AGTTCTGGCCGCTCGACGCACAGGCTTTCCGCGCTTGCTCGCGCCCAGGC
AGGAAGCTATTCCTGGAGATCGAGGCTCCCGCGAGGGTTATCATGAGGAT
GTGGATGACCTGCTGGCCGTTTCGCAAGGCGAGAAACGGACGTCATTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1550:7805..11003+

>mRNA_Ecto-sp13_S_contig1550.4102.1 ID=mRNA_Ecto-sp13_S_contig1550.4102.1|Name=mRNA_Ecto-sp13_S_contig1550.4102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1416bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1550:7805..11003+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTGCAGGCGATTTTCCATCCCTGGCATCACCGTCTCGATGGCA
AGGTGGCGGGTGTTCATCGCCCGGGGTGAAACGTCGATACAACAACACCC
GATCAAACCGCGCACGATGTCGCCAGAGCAGCAGTGCAACCGGAATCAGG
AACCCTCGGGCGCTGTTTCCCGTCAGCGACGACTTCATCCGGTCGGCGTG
GGTGCGGCGAGATCGCACCCAGCGCGCGCAGGAGTACGAGGAGCTTTTCC
CCTACTTCTCTCGCCGTTCTTCGACAGCGCCCTTCCTGAACGACAGGACA
ACCGCCTCGCAAACTGCCGCTGCTGGTACTCCCGCGGCACGACCAGCAGC
GCATGAGACTCAAGGGGGAAGGCTTTCCCCCGACCGACACCAGCGAGGAC
CGGGCGCATCATCCACAAAGGACCTTCCTACGGCAGGCGAAGCAGCCACG
ACACCAATATCGCGCGGCTGCGCGCGGAGTCGGCGGCACATGGGAGTGAG
GACTGGTTCCGGGAACGTTGCCGAGTTGCGACGGGCCTTTCGCCGGCTCG
AGCCCGAGAACATGTTTCGCGCTCCCTGGGTTGACGGGGAGCCGATATGG
GCTTACTGGGGGGACGGCAAAGGGGGAGGAGGAGAGGGCGGTCACGCCCA
TGGGGATCCCCAGCCGCCACTTCCCCCAGGGAGACGCGCGAGCACGAAGG
ATGGGTTTGTTCTGGTGCCAGCGAAAGAACTGACGGAACTGAGGGCCATC
GAGGGCGTACTGAGGAAAGAGCGAGGCGTCCTAAACGCACACTGTCTTGT
CGAGTTCAACGAGGGCGAGGTTAGCGCGCACCGTCCACTAGAGCTGACCC
GCATGGCCGTCCACGATGCTTGCGGCAGCGAAATGGCCGACGCTTTGCGC
GAATATCGCGCATGGACCGCTCGCAGTCGCAGCAGGGGTGACGGCGGCAG
AGAAAAGCGGAGCAGCAGCACCGCACCATGCTCTGCTCCAACACGAGGTA
ACAGGTCGACAGTGATGTCTGCGGGCGGCTGCGGGAAGCGTTCTCGCGCT
ACCGCATCGCAAGCGAGGGTTGCCGAGCTGCAGAGGACGCCGACCGGGTG
GCGGACGCTGCGGTGGGTGATGATGAAACGCCAGGCCGAGTTGAAGAGCC
AGGCGATGGAAGCAGCGGCGATGTTCGCCGAGGAAAGGGAGCAGCGCCTC
AAAGAAAGGTTCTTGGAGGCGTGGGAGAGGCGGCATGACTACGACCTCTA
CTGCGTTTTGGCGGGACAGTTCTGGCCGCTCGACGCACAGGCTTTCCGCG
CTTGCTCGCGCCCAGGCAGGAAGCTATTCCTGGAGATCGAGGCTCCCGCG
AGGGTTATCATGAGGATGTGGATGACCTGCTGGCCGTTTCGCAAGGCGAG
AAACGGACGTCATTAG
back to top