mRNA_Ecto-sp13_S_contig1550.4101.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1550.4101.1
Unique NamemRNA_Ecto-sp13_S_contig1550.4101.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1550.4101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1550contigEcto-sp13_S_contig1550:6674..7491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size248
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_002820.1
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.6881263-UTR-Ecto-sp13_S_contig1550:6673..67321681462822.6881263-UTR-Ecto-sp13_S_contig1550:6673..6732Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1550 6674..6732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.6989543-CDS-Ecto-sp13_S_contig1550:6732..67681681462822.6989543-CDS-Ecto-sp13_S_contig1550:6732..6768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1550 6733..6768 -
1681462822.7090552-CDS-Ecto-sp13_S_contig1550:6838..69251681462822.7090552-CDS-Ecto-sp13_S_contig1550:6838..6925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1550 6839..6925 -
1681462822.717132-CDS-Ecto-sp13_S_contig1550:7425..74911681462822.717132-CDS-Ecto-sp13_S_contig1550:7425..7491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1550 7426..7491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1550.4101.1prot_Ecto-sp13_S_contig1550.4101.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1550 6733..7491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1550.4101.1

>prot_Ecto-sp13_S_contig1550.4101.1 ID=prot_Ecto-sp13_S_contig1550.4101.1|Name=mRNA_Ecto-sp13_S_contig1550.4101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MAGITALHFCIFRGNNEQASERAISLIESGEYDLDAGDVGGQTPTHIACY
RDRHSASSSHFL*
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mRNA from alignment at Ecto-sp13_S_contig1550:6674..7491-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1550.4101.1 ID=mRNA_Ecto-sp13_S_contig1550.4101.1|Name=mRNA_Ecto-sp13_S_contig1550.4101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=818bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1550:6674..7491- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGGTATTACGGCGCTCCACTTCTGCATCTTCCGGGGCAACAATGA
ACAGGCAAGCGAGAGAGTGAAGACAACAGAGCGCTCTCGCATTGGAGCCC
GTGTCCGTAAAAACAGCCACATGGCGGGTGGCATCATCGATCTGCCAGTC
GGTATTCATTCGCTCTCCCTTTGTTTCTCGCGCGCTGAAACACAAGCGTC
TTGGCTCAGGCGCCGCTGGTCTATTTCCCATGGAAAGCAGCCGCAGGAAT
AGTCGTTGTTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGCTGCTG
GCTTTCCTTGCCCCAATTCCACGCCCTCCGCATGTACCAACCATCCTGGG
GTGTACTTTCCCCGTCCTCTTTTTTCCGCCTCTTCGATCATGCGACGACT
TTATCTTCACATTCGTTCCCCTCTCCGCCCTGTTGTCATGCGAAAAAAAT
GGCACCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCGTGTTCCGCGTC
TTATTCCGGTCCGTGCACACGCCGGCTTTGCCCCGACCCGTGTCTCCTAC
GCACCCAACACCGCAGGCGATCTCTCTAATCGAAAGCGGCGAGTACGATC
TAGATGCCGGCGATGTCGGCGGGCAGACTCCGACACACATTGCGTGCTAC
AGGGTGAGCTAAGAAAAAAAAAAAATACGCGCAACTACTTGTAGCACCCA
ACAACCATGCCGTGTTCTGGCAGGACCGACATTCAGCAAGCAGCAGTCAT
TTTCTGTAGGGCAACAAGACAGGGCTTCGCTTGACGTGGTCCCGAATGAT
GCGTACATTTCCACCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1550:6674..7491-

>mRNA_Ecto-sp13_S_contig1550.4101.1 ID=mRNA_Ecto-sp13_S_contig1550.4101.1|Name=mRNA_Ecto-sp13_S_contig1550.4101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1550:6674..7491- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGGTATTACGGCGCTCCACTTCTGCATCTTCCGGGGCAACAATGA
ACAGGCAAGCGAGAGAGCGATCTCTCTAATCGAAAGCGGCGAGTACGATC
TAGATGCCGGCGATGTCGGCGGGCAGACTCCGACACACATTGCGTGCTAC
AGGGACCGACATTCAGCAAGCAGCAGTCATTTTCTGTAG
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