mRNA_Ecto-sp13_S_contig15499.4099.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15499.4099.1
Unique NamemRNA_Ecto-sp13_S_contig15499.4099.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: D7FGP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP8_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.660e-38
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            AFEVFPSDEN+HFWKVLV+GPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV
Sbjct:  564 AFEVFPSDENMHFWKVLVHGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 628          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A1Q9E8K8_SYMMI (Anaphase-promoting complex subunit 11 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E8K8_SYMMI)

HSP 1 Score: 92.0 bits (227), Expect = 3.270e-20
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            AF++FP  ++V FWKV V+GP  TPY  G W++ + FPP +P   P+VRFITPI+HCNIN HGRV
Sbjct: 3257 AFDIFPGCDDVGFWKVTVSGPDGTPYAGGVWLIYVVFPPEFPVEPPEVRFITPIKHCNINQHGRV 3321          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A6B2KXV2_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXV2_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 4.410e-20
Identity = 31/65 (47.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            + +++P + ++ FW++++ GP+ TPY  G W++ + FP GYPS AP+VRF+TPIRHCN+N +G+V
Sbjct:  670 SIDIYPCESDISFWRMIIEGPSETPYENGVWLVYLLFPAGYPSEAPEVRFVTPIRHCNVNQYGKV 734          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A812WFX1_9DINO (Anaphase-promoting complex subunit 11 n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WFX1_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 6.060e-20
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            AF+VFPS +++ FWKV V+GP  TPY  G W+L + FP  +P   P+VRFITPI+HCNIN HGRV
Sbjct: 1530 AFDVFPSCDDIGFWKVTVSGPDGTPYAGGVWLLYVVFPTEFPVEPPEVRFITPIKHCNINQHGRV 1594          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A7S0AFI0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AFI0_9DINO)

HSP 1 Score: 90.1 bits (222), Expect = 1.540e-19
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            + EVFPS E++ FWK+L+ GP  TPY+ G W+L    PP YP+  P+VRF+TPIRHCN+N+HGRV
Sbjct:  961 SIEVFPS-EDLFFWKLLLEGPEGTPYQGGVWVLYCHLPPEYPACPPQVRFVTPIRHCNVNAHGRV 1024          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A6B2LAL7_9EUKA (UBC core domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAL7_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 2.730e-19
Identity = 31/65 (47.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            + E++P D ++ FW+ ++ GP+ TPY  G W++ + FP  YP+ AP+VRF+TPIRHCN+N +G+V
Sbjct:  126 SIEIYPCDADIGFWRAILQGPSDTPYHNGVWLVYVLFPSTYPAEAPEVRFVTPIRHCNVNQYGKV 190          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A812XS93_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XS93_SYMPI)

HSP 1 Score: 89.0 bits (219), Expect = 3.930e-19
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            AF++FPS +++  WK  V+GP  TPY +G W+L + FP  +P   P+VRFITPI+HCNIN HGRV
Sbjct:  913 AFDIFPSCDDISCWKATVSGPEGTPYADGVWLLYIIFPQQFPVEPPEVRFITPIKHCNINQHGRV 977          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A812TJ48_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TJ48_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 1.200e-18
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            AF++FP+ +++  WKV V+GP  TPY  G W+L + FP  +P   P++RFITPI+HCNIN HGRV
Sbjct:  226 AFDIFPNCDDIGCWKVTVSGPEGTPYTGGVWLLYIIFPAEFPVEPPEIRFITPIKHCNINQHGRV 290          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A813LMK5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LMK5_POLGL)

HSP 1 Score: 86.3 bits (212), Expect = 1.820e-18
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 AFEVFPS--DENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            A++VFP    + +  W+V++ GPA +PY  GCW+L   FPP YP+ AP VRF+T IRHCN+N+HGRV
Sbjct:  150 AYDVFPGVGADALSCWRVIMEGPADSPYAGGCWLLYALFPPEYPNKAPDVRFVTRIRHCNVNAHGRV 216          
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: X6MEQ6_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MEQ6_RETFI)

HSP 1 Score: 86.7 bits (213), Expect = 2.540e-18
Identity = 33/65 (50.77%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
            A +++P ++++ FW++++ GP STPY  G W+  M FPP YP  AP++RF+T I+HCNINS+GRV
Sbjct: 1040 AVDIYPCEKDMSFWRLVMEGPDSTPYAGGAWLAYMEFPPNYPEQAPEMRFVTSIKHCNINSYGRV 1104          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGP8_ECTSI4.660e-3896.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Q9E8K8_SYMMI3.270e-2058.46Anaphase-promoting complex subunit 11 n=2 Tax=Symb... [more]
A0A6B2KXV2_9EUKA4.410e-2047.69Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A812WFX1_9DINO6.060e-2060.00Anaphase-promoting complex subunit 11 n=1 Tax=Symb... [more]
A0A7S0AFI0_9DINO1.540e-1958.46Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A6B2LAL7_9EUKA2.730e-1947.69UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A812XS93_SYMPI3.930e-1955.38Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A812TJ48_9DINO1.200e-1853.85Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A813LMK5_POLGL1.820e-1853.73Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
X6MEQ6_RETFI2.540e-1850.77Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15499contigEcto-sp13_S_contig15499:745..939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score145.6
Seed ortholog evalue8.1e-33
Seed eggNOG ortholog2880.D7FGP8
Model size195
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
Cds size195
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.6058915-CDS-Ecto-sp13_S_contig15499:744..9391681462822.6058915-CDS-Ecto-sp13_S_contig15499:744..939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15499 745..939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15499.4099.1prot_Ecto-sp13_S_contig15499.4099.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15499 745..939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15499.4099.1

>prot_Ecto-sp13_S_contig15499.4099.1 ID=prot_Ecto-sp13_S_contig15499.4099.1|Name=mRNA_Ecto-sp13_S_contig15499.4099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRF
ITPIRHCNINSHGRV
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mRNA from alignment at Ecto-sp13_S_contig15499:745..939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15499.4099.1 ID=mRNA_Ecto-sp13_S_contig15499.4099.1|Name=mRNA_Ecto-sp13_S_contig15499.4099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15499:745..939- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTCGAGGTGTTCCCGAGCGACGAGAACGTGCACTTCTGGAAGGTTCT CGTCAACGGCCCGGCGAGCACCCCCTACAGGGAAGGGTGTTGGATGCTCA GCATGTTCTTCCCTCCGGGCTACCCCTCCGTGGCTCCCAAGGTCCGCTTC ATCACGCCCATCCGCCACTGCAACATCAACTCCCACGGAAGGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15499:745..939-

>mRNA_Ecto-sp13_S_contig15499.4099.1 ID=mRNA_Ecto-sp13_S_contig15499.4099.1|Name=mRNA_Ecto-sp13_S_contig15499.4099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15499:745..939- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTCGAGGTGTTCCCGAGCGACGAGAACGTGCACTTCTGGAAGGTTCT
CGTCAACGGCCCGGCGAGCACCCCCTACAGGGAAGGGTGTTGGATGCTCA
GCATGTTCTTCCCTCCGGGCTACCCCTCCGTGGCTCCCAAGGTCCGCTTC
ATCACGCCCATCCGCCACTGCAACATCAACTCCCACGGAAGGGTA
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