mRNA_Ecto-sp13_S_contig15499.4099.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: D7FGP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP8_ECTSI) HSP 1 Score: 142 bits (359), Expect = 4.660e-38 Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
AFEVFPSDEN+HFWKVLV+GPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV
Sbjct: 564 AFEVFPSDENMHFWKVLVHGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 628
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A1Q9E8K8_SYMMI (Anaphase-promoting complex subunit 11 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E8K8_SYMMI) HSP 1 Score: 92.0 bits (227), Expect = 3.270e-20 Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
AF++FP ++V FWKV V+GP TPY G W++ + FPP +P P+VRFITPI+HCNIN HGRV
Sbjct: 3257 AFDIFPGCDDVGFWKVTVSGPDGTPYAGGVWLIYVVFPPEFPVEPPEVRFITPIKHCNINQHGRV 3321
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A6B2KXV2_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXV2_9EUKA) HSP 1 Score: 91.7 bits (226), Expect = 4.410e-20 Identity = 31/65 (47.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
+ +++P + ++ FW++++ GP+ TPY G W++ + FP GYPS AP+VRF+TPIRHCN+N +G+V
Sbjct: 670 SIDIYPCESDISFWRMIIEGPSETPYENGVWLVYLLFPAGYPSEAPEVRFVTPIRHCNVNQYGKV 734
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A812WFX1_9DINO (Anaphase-promoting complex subunit 11 n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WFX1_9DINO) HSP 1 Score: 91.3 bits (225), Expect = 6.060e-20 Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
AF+VFPS +++ FWKV V+GP TPY G W+L + FP +P P+VRFITPI+HCNIN HGRV
Sbjct: 1530 AFDVFPSCDDIGFWKVTVSGPDGTPYAGGVWLLYVVFPTEFPVEPPEVRFITPIKHCNINQHGRV 1594
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A7S0AFI0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AFI0_9DINO) HSP 1 Score: 90.1 bits (222), Expect = 1.540e-19 Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
+ EVFPS E++ FWK+L+ GP TPY+ G W+L PP YP+ P+VRF+TPIRHCN+N+HGRV
Sbjct: 961 SIEVFPS-EDLFFWKLLLEGPEGTPYQGGVWVLYCHLPPEYPACPPQVRFVTPIRHCNVNAHGRV 1024
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A6B2LAL7_9EUKA (UBC core domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAL7_9EUKA) HSP 1 Score: 87.8 bits (216), Expect = 2.730e-19 Identity = 31/65 (47.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
+ E++P D ++ FW+ ++ GP+ TPY G W++ + FP YP+ AP+VRF+TPIRHCN+N +G+V
Sbjct: 126 SIEIYPCDADIGFWRAILQGPSDTPYHNGVWLVYVLFPSTYPAEAPEVRFVTPIRHCNVNQYGKV 190
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A812XS93_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XS93_SYMPI) HSP 1 Score: 89.0 bits (219), Expect = 3.930e-19 Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
AF++FPS +++ WK V+GP TPY +G W+L + FP +P P+VRFITPI+HCNIN HGRV
Sbjct: 913 AFDIFPSCDDISCWKATVSGPEGTPYADGVWLLYIIFPQQFPVEPPEVRFITPIKHCNINQHGRV 977
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A812TJ48_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TJ48_9DINO) HSP 1 Score: 87.0 bits (214), Expect = 1.200e-18 Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
AF++FP+ +++ WKV V+GP TPY G W+L + FP +P P++RFITPI+HCNIN HGRV
Sbjct: 226 AFDIFPNCDDIGCWKVTVSGPEGTPYTGGVWLLYIIFPAEFPVEPPEIRFITPIKHCNINQHGRV 290
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: A0A813LMK5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LMK5_POLGL) HSP 1 Score: 86.3 bits (212), Expect = 1.820e-18 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 1 AFEVFPS--DENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
A++VFP + + W+V++ GPA +PY GCW+L FPP YP+ AP VRF+T IRHCN+N+HGRV
Sbjct: 150 AYDVFPGVGADALSCWRVIMEGPADSPYAGGCWLLYALFPPEYPNKAPDVRFVTRIRHCNVNAHGRV 216
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Match: X6MEQ6_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MEQ6_RETFI) HSP 1 Score: 86.7 bits (213), Expect = 2.540e-18 Identity = 33/65 (50.77%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 1 AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 195
A +++P ++++ FW++++ GP STPY G W+ M FPP YP AP++RF+T I+HCNINS+GRV
Sbjct: 1040 AVDIYPCEKDMSFWRLVMEGPDSTPYAGGAWLAYMEFPPNYPEQAPEMRFVTSIKHCNINSYGRV 1104 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15499.4099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15499.4099.1 >prot_Ecto-sp13_S_contig15499.4099.1 ID=prot_Ecto-sp13_S_contig15499.4099.1|Name=mRNA_Ecto-sp13_S_contig15499.4099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp AFEVFPSDENVHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFback to top mRNA from alignment at Ecto-sp13_S_contig15499:745..939- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15499.4099.1 ID=mRNA_Ecto-sp13_S_contig15499.4099.1|Name=mRNA_Ecto-sp13_S_contig15499.4099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15499:745..939- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15499:745..939- >mRNA_Ecto-sp13_S_contig15499.4099.1 ID=mRNA_Ecto-sp13_S_contig15499.4099.1|Name=mRNA_Ecto-sp13_S_contig15499.4099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15499:745..939- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |