mRNA_Ecto-sp13_S_contig1549.4098.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1549.4098.1
Unique NamemRNA_Ecto-sp13_S_contig1549.4098.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1549.4098.1 vs. uniprot
Match: D7FXW9_ECTSI (Intraflagellar transport protein 122 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW9_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.210e-41
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 LTDEEALELITASPPQGGRGGGRKARHRGGNQWHEAKEGDADVMALGSDDEGADDDDDLEESHVPGEELFNRCINRTLEAQE 246
            LTDEEALELITASPPQGGRG GRKARHRGGNQWHEAKEGDADVMALGSDDEGA+DDDDLE ++VPGEELFNRCINRTLEAQE
Sbjct: 1170 LTDEEALELITASPPQGGRGRGRKARHRGGNQWHEAKEGDADVMALGSDDEGANDDDDLEGNYVPGEELFNRCINRTLEAQE 1251
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BLAST of mRNA_Ecto-sp13_S_contig1549.4098.1 vs. uniprot
Match: A0A6H5KUR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.970e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   94 QWHEAKEGDADVMALGSDDEGADDDDDLEESHVPGEELFNRCINRTLEAQE 246
            QWHEAKEGDADVMALGSDDEGADDDD LE S+VPGEELFNRCINRTLEAQE
Sbjct:  118 QWHEAKEGDADVMALGSDDEGADDDD-LEGSYVPGEELFNRCINRTLEAQE 167
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BLAST of mRNA_Ecto-sp13_S_contig1549.4098.1 vs. uniprot
Match: F0XY87_AURAN (Intraflagellar transport protein 122 homolog n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY87_AURAN)

HSP 1 Score: 70.1 bits (170), Expect = 3.440e-12
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 LTDEEALELITASPPQGGRGGGRKARHRGGNQWHEAKEGDADVMALGSDDEGADDDDDLEESHVPGEELFNRCINRTLEAQE 246
            L D+EALELI  +PP+ GR   RK R     QW+E+KEG+A+VM++G DD+  DDDD         E+LFN+CI+RTL  QE
Sbjct: 1116 LGDDEALELIREAPPETGRDR-RKLR----GQWNESKEGEANVMSMGGDDDAYDDDD--------AEDLFNKCIHRTLSNQE 1184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1549.4098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXW9_ECTSI1.210e-4193.90Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A6H5KUR3_9PHAE2.970e-2194.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0XY87_AURAN3.440e-1251.22Intraflagellar transport protein 122 homolog n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1549contigEcto-sp13_S_contig1549:15353..16096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score156.0
Seed ortholog evalue7.6e-36
Seed eggNOG ortholog2880.D7FXW9
Preferred nameIFT122
Model size249
KEGG koko:K16547,ko:K19656
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0003002,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007227,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010171,GO:0010172,GO:0010646,GO:0010648,GO:0010970,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0021510,GO:0021511,GO:0021513,GO:0021532,GO:0021904,GO:0021914,GO:0021915,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030031,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035136,GO:0035148,GO:0035239,GO:0035295,GO:0035556,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043113,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0045879,GO:0046626,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048568,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051641,GO:0051649,GO:0051668,GO:0051716,GO:0051960,GO:0051961,GO:0060173,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060830,GO:0060831,GO:0060971,GO:0060972,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0072594,GO:0072657,GO:0090596,GO:0097458,GO:0097499,GO:0097500,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1900076,GO:1903441,GO:1905515,GO:1990778,GO:2000026
Exons2
EggNOG free text desc.ciliary receptor clustering involved in smoothened signaling pathway
EggNOG OGsCOG2319@1,KOG1538@2759
Cds size246
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.5638914-CDS-Ecto-sp13_S_contig1549:15353..155061681462822.5638914-CDS-Ecto-sp13_S_contig1549:15353..15506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1549 15354..15506 -
1681462822.5767012-CDS-Ecto-sp13_S_contig1549:16003..160961681462822.5767012-CDS-Ecto-sp13_S_contig1549:16003..16096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1549 16004..16096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1549.4098.1prot_Ecto-sp13_S_contig1549.4098.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1549 15354..16096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1549.4098.1

>prot_Ecto-sp13_S_contig1549.4098.1 ID=prot_Ecto-sp13_S_contig1549.4098.1|Name=mRNA_Ecto-sp13_S_contig1549.4098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
LTDEEALELITASPPQGGRGGGRKARHRGGNQWHEAKEGDADVMALGSDD
EGADDDDDLEESHVPGEELFNRCINRTLEAQE
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mRNA from alignment at Ecto-sp13_S_contig1549:15353..16096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1549.4098.1 ID=mRNA_Ecto-sp13_S_contig1549.4098.1|Name=mRNA_Ecto-sp13_S_contig1549.4098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1549:15353..16096- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGACCGACGAGGAAGCTTTAGAGCTAATTACGGCCAGCCCACCTCAGGG
AGGACGTGGAGGAGGGAGAAAAGCCCGCCATCGTGGTGGAAATGTGGGTG
CACCGAAATAACGGTATAGCACATCTATCCTCCGTTGCCAACTAATCCAT
ACCTCGAAGCTCAGGTTGGTACTCCACACTCAACTGCAAGAGCCATCGTA
TTCTACCCTCTTCGAACGTCAACGGTTCAAGGGCAGAGCTCGGCGCGAAG
TATCTCGATTTTCGGGGCTTGGCCAGATAAGAACATTATGGAATCATCTG
ATTGAAAATTGAAAATTGGGGACGCCACAGCTCTACGTGTTCCTCGGCAG
GGGAGGCTGGTGACAACAACTCTCTGTCTGAAGCTCCGGCCCGTGAAGTT
TATGCTACATAAACATGTTTTTGTTAATGTCAGAGATTCGCCTAGATGCG
ACGCCAGTAGCGCCGCACGGTGTACAACCGAAACCTAATATTGGAATCTA
GGCTTTTTCTTTGGCATGCCTCCCCCCAACGCATCCGTTCGTTTTGAGTT
TAATTTATGCGTGTGCGTGCCTTGCCTTAAATATTCATAGCAATGGCACG
AGGCAAAAGAAGGAGATGCGGACGTAATGGCCCTCGGAAGCGACGATGAG
GGGGCGGATGACGACGACGACTTGGAGGAAAGTCATGTGCCGGGAGAAGA
GCTCTTCAACCGCTGCATCAACCGCACGCTTGAAGCACAGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1549:15353..16096-

>mRNA_Ecto-sp13_S_contig1549.4098.1 ID=mRNA_Ecto-sp13_S_contig1549.4098.1|Name=mRNA_Ecto-sp13_S_contig1549.4098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1549:15353..16096- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGACCGACGAGGAAGCTTTAGAGCTAATTACGGCCAGCCCACCTCAGGG
AGGACGTGGAGGAGGGAGAAAAGCCCGCCATCGTGGTGGAAATCAATGGC
ACGAGGCAAAAGAAGGAGATGCGGACGTAATGGCCCTCGGAAGCGACGAT
GAGGGGGCGGATGACGACGACGACTTGGAGGAAAGTCATGTGCCGGGAGA
AGAGCTCTTCAACCGCTGCATCAACCGCACGCTTGAAGCACAGGAG
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