mRNA_Ecto-sp13_S_contig15488.4096.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15488.4096.1
Unique NamemRNA_Ecto-sp13_S_contig15488.4096.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15488.4096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15488contigEcto-sp13_S_contig15488:120..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.378-UTR-Ecto-sp13_S_contig15488:119..3541681462822.378-UTR-Ecto-sp13_S_contig15488:119..354Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15488 120..354 +
1681462822.4150183-UTR-Ecto-sp13_S_contig15488:706..7351681462822.4150183-UTR-Ecto-sp13_S_contig15488:706..735Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15488 707..735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.39424-CDS-Ecto-sp13_S_contig15488:354..3861681462822.39424-CDS-Ecto-sp13_S_contig15488:354..386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15488 355..386 +
1681462822.4047368-CDS-Ecto-sp13_S_contig15488:441..7061681462822.4047368-CDS-Ecto-sp13_S_contig15488:441..706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15488 442..706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15488.4096.1prot_Ecto-sp13_S_contig15488.4096.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15488 355..706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15488.4096.1

>prot_Ecto-sp13_S_contig15488.4096.1 ID=prot_Ecto-sp13_S_contig15488.4096.1|Name=mRNA_Ecto-sp13_S_contig15488.4096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MRRPTSWLICGLDNRRNTTWRCVRVGHGCPALPATKIVSKIRGIAIGTDP
PPLLNNDTYLPTLQRRYRHRSPSAMTTHPPRKSVASPSAPTPPWERRA*
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mRNA from alignment at Ecto-sp13_S_contig15488:120..735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15488.4096.1 ID=mRNA_Ecto-sp13_S_contig15488.4096.1|Name=mRNA_Ecto-sp13_S_contig15488.4096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15488:120..735+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGATCTTTTTTTCTTTTTCTTTTTATTCTTAGAAATGGGACAACTTT
TCCATCTCTTCCACAGAGAAGAGTCCGTGATAGCTTTGAAACGAAGGTGG
ACTTGGAACTTTTGGCATCATGGATATAGGTAGATTTTTCGCATTAGGGG
TGGGGTAGACTTGATGGATGCGACGCCATCTTTTTTGGGTGACACGTTGA
AATTGTTGGTTTTGCGTGGCTTACAGGCGTGATGTATGCGACGCCCTACA
TCTTGGTTGATATGTGGTCCACGAATTCCCGTCACCTCCGTTGGCCCAGT
TCTGTAGACACGCAAAAATGCTTCTAGACAATCGTCGAAACACCACTTGG
CGATGTGTACGCGTGGGTCATGGGTGTCCTGCCCTCCCTGCAACCAAAAT
CGTCTCAAAGATCCGCGGGATCGCTATTGGCACCGACCCTCCCCCCCTAT
TGAATAATGACACGTATCTCCCTACACTACAGCGTCGATATCGGCACCGA
TCCCCCAGTGCAATGACAACACATCCCCCCCGCAAGTCTGTGGCATCGCC
ATCGGCGCCCACCCCACCGTGGGAGCGACGTGCGTGATCGCTCGTACTTG
CCCCCCCCCCGTCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15488:120..735+

>mRNA_Ecto-sp13_S_contig15488.4096.1 ID=mRNA_Ecto-sp13_S_contig15488.4096.1|Name=mRNA_Ecto-sp13_S_contig15488.4096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15488:120..735+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACGCCCTACATCTTGGTTGATATGTGGTCTAGACAATCGTCGAAA
CACCACTTGGCGATGTGTACGCGTGGGTCATGGGTGTCCTGCCCTCCCTG
CAACCAAAATCGTCTCAAAGATCCGCGGGATCGCTATTGGCACCGACCCT
CCCCCCCTATTGAATAATGACACGTATCTCCCTACACTACAGCGTCGATA
TCGGCACCGATCCCCCAGTGCAATGACAACACATCCCCCCCGCAAGTCTG
TGGCATCGCCATCGGCGCCCACCCCACCGTGGGAGCGACGTGCGTGA
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