mRNA_Ecto-sp13_S_contig15476.4088.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15476.4088.1
Unique NamemRNA_Ecto-sp13_S_contig15476.4088.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15476.4088.1 vs. uniprot
Match: D7FYA0_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA0_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.280e-40
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 3 
Query:    3 VLGGEKVQEVAQKLMDHHAKMTNIFKEMYGDVRYGLTDVPKDSCFLRSRPYLDLVERTMSHLVEWGSVPPSPAVAVAGA 239
            VLGGEKVQEVAQKLMDHHAKMTNIFKEMYGDVRYGLTDVPKDSCFLRSRPYLDLVERTMS LVEWGSV PSPAVAVAGA
Sbjct:  369 VLGGEKVQEVAQKLMDHHAKMTNIFKEMYGDVRYGLTDVPKDSCFLRSRPYLDLVERTMSQLVEWGSVRPSPAVAVAGA 447
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BLAST of mRNA_Ecto-sp13_S_contig15476.4088.1 vs. uniprot
Match: A0A6H5JGT6_9PHAE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.900e-38
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 3 
Query:    3 VLGGEKVQEVAQKLMDHHAKMTNIFKEMYGDVRYGLTDVPKDSCFLRSRPYLDLVERTMSHLVEWGSVPPSPAVAVAGA 239
            VLG EK+QEVAQKLMDHHAKMTNIFKEMYGDVRYGLTDVPKDSCFLRSRPYLDLVERTMS LVEWGSV PSPAVAV GA
Sbjct:  337 VLGSEKLQEVAQKLMDHHAKMTNIFKEMYGDVRYGLTDVPKDSCFLRSRPYLDLVERTMSQLVEWGSVRPSPAVAVDGA 415
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BLAST of mRNA_Ecto-sp13_S_contig15476.4088.1 vs. uniprot
Match: W7TSI8_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSI8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.050e-10
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:   15 EKVQEVAQKLMDHHAKMTNIFKEMYGDVRYGLTDVPKDSCFLRSRPYLDLVERTMSHLVEWGSVPPSPA 221
            E + EV  +L+DHH  +T++F+ MY DV+YGL+DV +D   LRS+PY   +E TM  LV+W +  P+PA
Sbjct:  392 EVLGEVVARLLDHHRSLTSVFRAMYSDVKYGLSDVTRDLSCLRSQPYYQNLETTMQALVDWAA--PAPA 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15476.4088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYA0_ECTSI2.280e-4097.47JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGT6_9PHAE1.900e-3893.67Bifunctional lysine-specific demethylase and histi... [more]
W7TSI8_9STRA3.050e-1047.83Bifunctional lysine-specific demethylase and histi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15476contigEcto-sp13_S_contig15476:1425..3358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score133.7
Seed ortholog evalue5.3e-29
Seed eggNOG ortholog2880.D7FYA0
Model size949
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Cupin superfamily protein
EggNOG OGs2CYFP@1,2S42U@2759
Cds size321
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.8452518-UTR-Ecto-sp13_S_contig15476:1424..14681681462821.8452518-UTR-Ecto-sp13_S_contig15476:1424..1468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15476 1425..1468 +
1681462821.892857-UTR-Ecto-sp13_S_contig15476:2774..33581681462821.892857-UTR-Ecto-sp13_S_contig15476:2774..3358Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15476 2775..3358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.8605917-CDS-Ecto-sp13_S_contig15476:1468..15241681462821.8605917-CDS-Ecto-sp13_S_contig15476:1468..1524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15476 1469..1524 +
1681462821.873093-CDS-Ecto-sp13_S_contig15476:2509..27741681462821.873093-CDS-Ecto-sp13_S_contig15476:2509..2774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15476 2510..2774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15476.4088.1prot_Ecto-sp13_S_contig15476.4088.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15476 1469..2774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15476.4088.1

>prot_Ecto-sp13_S_contig15476.4088.1 ID=prot_Ecto-sp13_S_contig15476.4088.1|Name=mRNA_Ecto-sp13_S_contig15476.4088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MDHHAKMTNIFKEMYGDVRYGLTDVPKDSCFLRSRPYLDLVERTMSHLVE
WGSVPPSPAVAVAGAAAGGGPAAAAATRAPSSGFGGAAVASPKKGAGAKK
KKSKKK*
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mRNA from alignment at Ecto-sp13_S_contig15476:1425..3358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15476.4088.1 ID=mRNA_Ecto-sp13_S_contig15476.4088.1|Name=mRNA_Ecto-sp13_S_contig15476.4088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1934bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15476:1425..3358+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCCTCGGAGGCGAAAAGGTGCAGGAAGTGGCCCAGAAGCTCATGGAC
CACCACGCGAAGATGACCAACATCTTCAAGGAGATGTACGGGGACGTCAG
GTCGGTTTCCCCCCTTCTCCCCACGTTGTTGTTGCCCTCGAGTCCGGCTT
GTGTGCGCACGCTTGTACTCCGTGATGTTTCTCGGCACGGATGTGTACAG
AGCACTTGGATGTAGACCCTTTCCCGTGATGTGTGTGTTCTTTAATTTCT
TGTTTTAGGACAAGCATGTGCTTTTCGTTTTGGCAAAAAATATGCTCGGA
ACCTTCCTTTTTGTTCTGTTTGTGTGCTAGGTTTTGGCTAGCTTCGACGT
GGTTTCTTTGCCTTTTACGCCAGTGTCTAATGGGCAAGGGCTTATTTGGA
TTGCTTCACAAACGGTCCGGGGTTCCCAGAACAAGAAAGGCCTCCGCCGT
GTCATTTCTACGCTACATCTGTTTCGTTGTTTTTTTCTCCTTTTTGCGGG
CAGAGTGGTGGGAACGCGTGGCCACGTTGAAACGTCGAAGAAGGTCGGAA
TCGCAACGTTAGACGCAGTGAGCAGTATTCCGAGAAAGAGGGTGCACTCG
AGAGTGGAATGGGGTAGATCGGTGCCACCTACGGTGAACATGGCAGAATG
AAACAGCGGCGGAAAACGCTCGCAACAGCAAGGACGGGATGAAGTCATCG
TGGGCGTCACCCGCCTTCAAGTACAAGTAGGGGAGAGCTTCAAGGGTAGT
AGCGATCATACAAAGCAGAACTATGACAGAAGCACGAAGAATCCCCGACT
GCAACGCCAATAGTTAGCAGTAACTATGCTCCGTATCGAAAAGGGGTTCC
GCGTGGTGGTTGATGGCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ACCCCCCCCCCCCCCCCCCCCCCACCACCCCCCTCTCCTCCCCCCCACCC
CCCCCCCCCCCACTCCNNNNNNNNNNAAAAAACCCCCACGCCAACACCAA
AATTAATAAAAAAAAATCCCCCTTATAAAAAAGGGGTTCCGCGGGGGGGT
TGGGGGCCCCCCCCCCCCCCCCCCCCCCCCGACAGATACGGCCTCACGGA
CGTGCCCAAGGACTCCTGCTTTCTTCGATCCAGACCCTACCTCGACCTCG
TCGAGAGAACCATGTCGCACCTGGTTGAGTGGGGCAGCGTCCCCCCCAGC
CCTGCCGTTGCCGTGGCCGGGGCGGCGGCGGGCGGGGGTCCAGCGGCGGC
GGCGGCAACGCGTGCCCCTTCCTCGGGGTTCGGGGGGGCAGCCGTGGCTT
CCCCAAAGAAGGGCGCGGGGGCGAAGAAGAAAAAGTCGAAAAAGAAATAA
AGGAGCCGCGCCTCTTGCTGTAGAATCCGCACCATGTGCCTGGCATGGTT
GTTGTCTCGCTTCTTCAAGGCATTCGTTGTTCTTTTTTTTTTTTCTCATT
GCTTGATTGTCTGTGTCTGCTGTAAAGAGAGTGGGTCGAGGGATCGATCT
CAATTTTTTTTTTAACAAGGTGGTATGCAACAGGTGGTGTATGGCCGATG
ATGAAAGAGGTGGGACGTTGTTGAAAAGGTGCAGCCCATTGGATTCGGTC
AAGCCTATTATGAAGACCCAGGTTCCGTGGTCGGGGAGTCTTTCGGGTGG
ATGTTGGCAGCAGGGTATACTGTGTTGATTACTCTACGAATACGAAATAC
AGCACCATTGCTTGAAGAGGCCCCGGTAGCAGCAGCTTGTTTGTGCCCGC
ACATTGGAACTTGCCAGGTTAAGGAATTGAGCCTCGAAAAAACAAAATCA
AAGAACGTGAGTACCAGTTTTGTGAGCTTTGAGAACCCTTACACGAACGG
TCATTCGTAGCATAGACCCGAGGGACTAAGAACCTCAGCCTCGCCCTAAA
TACAGTTTCTGTGCAAGCGCTAACTGTAGAGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15476:1425..3358+

>mRNA_Ecto-sp13_S_contig15476.4088.1 ID=mRNA_Ecto-sp13_S_contig15476.4088.1|Name=mRNA_Ecto-sp13_S_contig15476.4088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15476:1425..3358+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCACCACGCGAAGATGACCAACATCTTCAAGGAGATGTACGGGGA
CGTCAGATACGGCCTCACGGACGTGCCCAAGGACTCCTGCTTTCTTCGAT
CCAGACCCTACCTCGACCTCGTCGAGAGAACCATGTCGCACCTGGTTGAG
TGGGGCAGCGTCCCCCCCAGCCCTGCCGTTGCCGTGGCCGGGGCGGCGGC
GGGCGGGGGTCCAGCGGCGGCGGCGGCAACGCGTGCCCCTTCCTCGGGGT
TCGGGGGGGCAGCCGTGGCTTCCCCAAAGAAGGGCGCGGGGGCGAAGAAG
AAAAAGTCGAAAAAGAAATAA
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