prot_Ecto-sp13_S_contig15473.4087.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15473.4087.1
Unique Nameprot_Ecto-sp13_S_contig15473.4087.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length77
Homology
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: D8LR79_ECTSI (Cyclin-dependent kinases regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR79_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 3.500e-45
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0
Query:    1 MSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLVNQNRS 76
            M+KLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTG VDPAR+RMAEAAFRQQL+NQNRS
Sbjct:    1 MNKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGTVDPARQRMAEAAFRQQLINQNRS 76          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7R9U1M9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.900e-21
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 0
Query:    3 KLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLV 71
            +LS ++LLS+AE   LGV Q RGWEHY+I RPEP+ILLFRRP+GTDP TG VDP  +R A+ A+ + L 
Sbjct:   66 RLSKTKLLSDAEWRELGVQQSRGWEHYAIHRPEPHILLFRRPLGTDPTTGRVDPEAQREAKEAYMRSLT 134          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A6H5K682_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K682_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.650e-21
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0
Query:   33 RPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLVNQNRS 76
            RPEPNILLFRRPMGTDPVTGAVDPAR RMAEAAFRQQL+NQNRS
Sbjct:   22 RPEPNILLFRRPMGTDPVTGAVDPARLRMAEAAFRQQLMNQNRS 65          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: K0TR55_THAOC (Cyclin-dependent kinases regulatory subunit n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0TR55_THAOC)

HSP 1 Score: 85.9 bits (211), Expect = 5.310e-20
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 0
Query:    4 LSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL 70
            L  ++LLSE E  S+GV Q RGW+HY+I RPEP+ILLFRRP+GTDP TGAVDP  +RMA   ++ Q 
Sbjct:   45 LPKTRLLSENEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQTGAVDPELKRMALEEYKGQF 111          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.500e-19
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0
Query:    4 LSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL 70
            L  ++LLSE E   +GV Q RGW HY+I RPEP+ILLFRRP+GTDPVTG +DPA  R A+ A++  L
Sbjct:   49 LPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNL 115          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A1E7F3Q6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3Q6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.300e-19
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 0
Query:    4 LSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLVN 72
            L  S+LLSE+E   +GV Q RGW HY+I RPEP+ILLFRRP+GTDP +G VDP   R A   +R Q  N
Sbjct:   34 LPKSRLLSESEWRGIGVQQSRGWGHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKAREEYRAQYDN 102          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 7.810e-19
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 0
Query:    4 LSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLVN 72
            L  S++L+E E   LGV Q RGW HY+I RPEP+ILLF+RP+GTDPV+G VDP   + A+ A++Q+L +
Sbjct:   31 LPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQELAD 99          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7S0UH58_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UH58_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-18
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0
Query:    4 LSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQ 69
            L  S+LLSE+E   +GV Q RGW+HY+I RPEP+ILLFRRP+GTDP +G VDP   R A   +R Q
Sbjct:   63 LPKSRLLSESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKARDEYRSQ 128          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7S3VGP8_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGP8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.690e-18
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 0
Query:    1 MSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL-VNQNR 75
            + +L  ++LLSE+E   +GV Q RGW HY++ RPEP+ILLFRRP+GTDP TG VDP  +R A   ++ Q  + QNR
Sbjct:   29 LRQLPRNRLLSESEWRGVGVQQSRGWVHYALHRPEPHILLFRRPLGTDPQTGRVDPELKRQALEEYKTQFGLKQNR 104          
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A1Z5K5B7_FISSO (Cyclin-dependent kinases regulatory subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5B7_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 5.000e-18
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    4 LSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL 70
            L  S+LL+E+E  S+GV Q RGW+HY+I RPEP+ILLFRRP+GTDP +G VDP   + A   ++ Q 
Sbjct:   33 LPKSRLLTESEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPELLKAAREEYKDQF 99          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR79_ECTSI3.500e-4594.74Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7R9U1M9_9STRA2.900e-2160.87Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A6H5K682_9PHAE6.650e-2195.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0TR55_THAOC5.310e-2061.19Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S2BBH9_9STRA1.500e-1959.70Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A1E7F3Q6_9STRA6.300e-1957.97Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
D7G7T5_ECTSI7.810e-1955.07Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S0UH58_9STRA1.320e-1859.09Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S3VGP8_9STRA2.690e-1852.63Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A1Z5K5B7_FISSO5.000e-1855.22Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000789Cyclin-dependent kinase, regulatory subunitPRINTSPR00296CYCLINKINASEcoord: 14..28
score: 52.82
coord: 29..43
score: 67.69
IPR000789Cyclin-dependent kinase, regulatory subunitSMARTSM01084CKS_2coord: 1..46
e-value: 2.3E-6
score: 37.1
IPR000789Cyclin-dependent kinase, regulatory subunitPFAMPF01111CKScoord: 4..44
e-value: 9.7E-13
score: 48.2
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilyGENE3D3.30.170.10coord: 1..60
e-value: 2.7E-15
score: 58.0
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilySUPERFAMILY55637Cell cycle regulatory proteinscoord: 7..50
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..46
NoneNo IPR availablePANTHERPTHR23415:SF30CYCLIN-DEPENDENT KINASES REGULATORY SUBUNITcoord: 1..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15473contigEcto-sp13_S_contig15473:852..1491 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15473.4087.1mRNA_Ecto-sp13_S_contig15473.4087.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15473 824..1644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15473.4087.1 ID=prot_Ecto-sp13_S_contig15473.4087.1|Name=mRNA_Ecto-sp13_S_contig15473.4087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPV
TGAVDPARRRMAEAAFRQQLVNQNRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000789Cyclin-dep_kinase_reg-sub
IPR036858Cyclin-dep_kinase_reg-sub_sf