mRNA_Ecto-sp13_S_contig15473.4087.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15473.4087.1
Unique NamemRNA_Ecto-sp13_S_contig15473.4087.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: D8LR79_ECTSI (Cyclin-dependent kinases regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR79_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.730e-44
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:   29 MSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLVNQNRS 256
            M+KLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTG VDPAR+RMAEAAFRQQL+NQNRS
Sbjct:    1 MNKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGTVDPARQRMAEAAFRQQLINQNRS 76
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7R9U1M9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.190e-24
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:    2 RHIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLV 241
            RH+ LP  +  +LS ++LLS+AE   LGV Q RGWEHY+I RPEP+ILLFRRP+GTDP TG VDP  +R A+ A+ + L 
Sbjct:   55 RHVILPKELAKRLSKTKLLSDAEWRELGVQQSRGWEHYAIHRPEPHILLFRRPLGTDPTTGRVDPEAQREAKEAYMRSLT 134
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.140e-22
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2 
Query:    2 RHIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL-VNQ 247
            RH+ LP  +   L  ++LLSE E   +GV Q RGW HY+I RPEP+ILLFRRP+GTDPVTG +DPA  R A+ A++  L +NQ
Sbjct:   37 RHVILPKELAKNLPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNLELNQ 119
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: K0TR55_THAOC (Cyclin-dependent kinases regulatory subunit n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0TR55_THAOC)

HSP 1 Score: 93.6 bits (231), Expect = 4.530e-22
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    5 HIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL 238
            H+ LP  +   L  ++LLSE E  S+GV Q RGW+HY+I RPEP+ILLFRRP+GTDP TGAVDP  +RMA   ++ Q 
Sbjct:   34 HVILPKELAKTLPKTRLLSENEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQTGAVDPELKRMALEEYKGQF 111
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A1E7F3Q6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3Q6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.520e-22
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    2 RHIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLVNQ 247
            RH+ LP  +   L  S+LLSE+E   +GV Q RGW HY+I RPEP+ILLFRRP+GTDP +G VDP   R A   +R Q  N+
Sbjct:   22 RHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWGHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKAREEYRAQYDNR 103
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.150e-21
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 2 
Query:    2 RHIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQLVNQ 247
            RH+ LP  +   L  S++L+E E   LGV Q RGW HY+I RPEP+ILLF+RP+GTDPV+G VDP   + A+ A++Q+L ++
Sbjct:   19 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQELADK 100
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7S3VGP8_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGP8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.380e-21
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 2 
Query:    2 RHIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL-VNQNR 253
            RH+ LP  ++ +L  ++LLSE+E   +GV Q RGW HY++ RPEP+ILLFRRP+GTDP TG VDP  +R A   ++ Q  + QNR
Sbjct:   20 RHVILPKELLRQLPRNRLLSESEWRGVGVQQSRGWVHYALHRPEPHILLFRRPLGTDPQTGRVDPELKRQALEEYKTQFGLKQNR 104
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7S0UH58_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UH58_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.990e-21
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:    2 RHIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQ 235
            RH+ LP  +   L  S+LLSE+E   +GV Q RGW+HY+I RPEP+ILLFRRP+GTDP +G VDP   R A   +R Q
Sbjct:   51 RHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKARDEYRSQ 128
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BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A1Z5K5B7_FISSO (Cyclin-dependent kinases regulatory subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5B7_FISSO)

HSP 1 Score: 90.1 bits (222), Expect = 7.250e-21
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 2 
Query:    2 RHIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL 238
            RH+ LP  +   L  S+LL+E+E  S+GV Q RGW+HY+I RPEP+ILLFRRP+GTDP +G VDP   + A   ++ Q 
Sbjct:   21 RHVILPKELAKTLPKSRLLTESEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPELLKAAREEYKDQF 99
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Match: A0A7S2BWV6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWV6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.610e-21
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 2 
Query:    2 RHIALPDSIMSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGAVDPARRRMAEAAFRQQL-VNQNR 253
            RH+ LP  +   L  ++LL E E   +GV Q RGW+HY+I RPEP+ILLFRRP+GTDPVTG VD    R A+ A+   L VNQ +
Sbjct:   38 RHVILPKELAKNLPKARLLGEQEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDVELERDAKDAYNASLAVNQRK 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15473.4087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR79_ECTSI2.730e-4494.74Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7R9U1M9_9STRA3.190e-2457.50Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S2BBH9_9STRA1.140e-2255.42Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
K0TR55_THAOC4.530e-2256.41Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A1E7F3Q6_9STRA6.520e-2253.66Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
D7G7T5_ECTSI1.150e-2151.22Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S3VGP8_9STRA1.380e-2151.76Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S0UH58_9STRA1.990e-2155.13Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A1Z5K5B7_FISSO7.250e-2151.90Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S2BWV6_9STRA8.610e-2152.94Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15473contigEcto-sp13_S_contig15473:824..1644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score87.0
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog159749.K0TR55
Model size412
KEGG koko:K02219
KEGG Pathwayko04111,ko05200,ko05222,map04111,map05200,map05222
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function
EggNOG OGs2XGJ7@2836,KOG3484@1,KOG3484@2759
Ec32 ortholog descriptionCyclin-dependent kinase, regulatory subunit
Ec32 orthologEc-06_004050.1
Cds size231
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.7792225-UTR-Ecto-sp13_S_contig15473:823..8511681462821.7792225-UTR-Ecto-sp13_S_contig15473:823..851Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15473 824..851 +
1681462821.816437-UTR-Ecto-sp13_S_contig15473:1491..16441681462821.816437-UTR-Ecto-sp13_S_contig15473:1491..1644Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15473 1492..1644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.7917461-CDS-Ecto-sp13_S_contig15473:851..9491681462821.7917461-CDS-Ecto-sp13_S_contig15473:851..949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15473 852..949 +
1681462821.802043-CDS-Ecto-sp13_S_contig15473:1358..14911681462821.802043-CDS-Ecto-sp13_S_contig15473:1358..1491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15473 1359..1491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15473.4087.1prot_Ecto-sp13_S_contig15473.4087.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15473 852..1491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15473.4087.1

>prot_Ecto-sp13_S_contig15473.4087.1 ID=prot_Ecto-sp13_S_contig15473.4087.1|Name=mRNA_Ecto-sp13_S_contig15473.4087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MSKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPV
TGAVDPARRRMAEAAFRQQLVNQNRS*
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mRNA from alignment at Ecto-sp13_S_contig15473:824..1644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15473.4087.1 ID=mRNA_Ecto-sp13_S_contig15473.4087.1|Name=mRNA_Ecto-sp13_S_contig15473.4087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=821bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15473:824..1644+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCATATAGCGCTGCCCGACTCAATTATGAGCAAGTTGTCGCCTTCGC
AGCTGCTTTCTGAGGCGGAGCTGGAATCTTTGGGCGTGTTCCAGGACCGC
GGCTGGGAGCACTACTCCATCCTCCGGCGAGTGATGCTTTGAGGCGGCTG
CAAAGCGCACGCGAGACAGATTATCCAGTCCTAAATTTTGATCAAGTCGT
TTCATGGATCCCGGCTTTTCAAGGGTGCCGCCAGGCGGCTAACCACGTTG
TCGGAGCTTCGACGTAGAGACAGATGTACACCCGAAACAACGGCAATGGA
AGTTCACGATCATGCTCTCGACTAAAGCACGCAAAGTTAGCCGAGGCAAA
ATATTTTCACCCTGCAAAACCAGCAGTCGAAGAAAAACCAGCCTCAACGA
CGACGTCAACGCACAACTCTGGCCGCCCAAGAGTGTGTACAATAGCCGCC
GAATCGCGCCGGCGAAAATCGACGTTATTGCTTCCGTACGACGCGGTTTG
TTTGACGCGCTCACCTGCCTAACCTTTTCCTCTAGGCCGGAGCCAAACAT
CCTGTTGTTCCGGCGGCCTATGGGCACCGACCCCGTCACTGGGGCAGTGG
ACCCGGCACGGCGACGCATGGCTGAAGCAGCTTTCAGGCAACAGCTTGTT
AATCAGAACCGATCCTGAAGCGGAAAAAGTGGCAGAGGGAAAGTTGAAGC
CTCAGGATTTGACGCCGCGGCGCACGGTGTGAGGGATGGGCTGGTGACTG
TTTGGTGGCGACGAGATATTTTGGGTGGCACAGTGTTGTTACACACGCCT
TGCCCTGTAGCGAATTAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15473:824..1644+

>mRNA_Ecto-sp13_S_contig15473.4087.1 ID=mRNA_Ecto-sp13_S_contig15473.4087.1|Name=mRNA_Ecto-sp13_S_contig15473.4087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15473:824..1644+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAAGTTGTCGCCTTCGCAGCTGCTTTCTGAGGCGGAGCTGGAATC
TTTGGGCGTGTTCCAGGACCGCGGCTGGGAGCACTACTCCATCCTCCGGC
CGGAGCCAAACATCCTGTTGTTCCGGCGGCCTATGGGCACCGACCCCGTC
ACTGGGGCAGTGGACCCGGCACGGCGACGCATGGCTGAAGCAGCTTTCAG
GCAACAGCTTGTTAATCAGAACCGATCCTGA
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