mRNA_Ecto-sp13_S_contig15472.4086.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15472.4086.1
Unique NamemRNA_Ecto-sp13_S_contig15472.4086.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15472.4086.1 vs. uniprot
Match: D8LMP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMP3_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.610e-30
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEH 174
            RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEH
Sbjct:   86 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEH 143
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BLAST of mRNA_Ecto-sp13_S_contig15472.4086.1 vs. uniprot
Match: A0A382Q2U4_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382Q2U4_9ZZZZ)

HSP 1 Score: 53.1 bits (126), Expect = 6.800e-6
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKT 162
            RG++E+V++ IA G DL  M  +  T LH A  G   +VA+LLI KGA+LNAK+
Sbjct:   36 RGNIEAVKQAIADGADLNAMGDEGETPLHQAALGGHKEVAELLIVKGADLNAKS 89
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BLAST of mRNA_Ecto-sp13_S_contig15472.4086.1 vs. uniprot
Match: A0A097EQD2_9GAMM (Glutaminase n=1 Tax=Francisella sp. FSC1006 TaxID=1547445 RepID=A0A097EQD2_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 1.100e-5
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 GDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTR 165
            GD+  +++ +A G D+ + D+DN TALH+A A     V + LI KGAN+NA  R
Sbjct:  435 GDISEIKRAVALGVDINKGDYDNRTALHLAAAEGHDDVVKYLIRKGANINATDR 488
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BLAST of mRNA_Ecto-sp13_S_contig15472.4086.1 vs. uniprot
Match: A0A432FEB4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A432FEB4_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-5
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKT 162
            RG++E+V++ IA G D+  M  +  T LH A  G   +VA+LLI KGA+LNAK+
Sbjct:   36 RGNIEAVKQAIADGADVNTMGDEGETPLHQAALGGHKKVAELLIAKGADLNAKS 89
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BLAST of mRNA_Ecto-sp13_S_contig15472.4086.1 vs. uniprot
Match: A0A103Y1S0_CYNCS (Ankyrin repeat-containing protein n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y1S0_CYNCS)

HSP 1 Score: 53.1 bits (126), Expect = 4.840e-5
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    4 GDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTR 165
            GDLE +++ + +G D+   D DN TALH+A    FS VA+LL+ +GA ++ + R
Sbjct:   53 GDLEGIKELLTSGTDVNFKDIDNRTALHVAACQGFSNVAELLLERGAEVDPRDR 106
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BLAST of mRNA_Ecto-sp13_S_contig15472.4086.1 vs. uniprot
Match: M1VJX3_CYAM1 (Similar to Raf/ATN-like protein kinase, with ankyrin repeats n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VJX3_CYAM1)

HSP 1 Score: 53.1 bits (126), Expect = 5.810e-5
Identity = 23/55 (41.82%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTR 165
            RGD+ +V+ +I  G D+ + D+D  TALH+A A  +++VA+LL+  GA++ A  R
Sbjct: 1201 RGDIAAVRSFIGEGVDVRQADYDRRTALHLAAAEGYTEVAKLLVEAGADVMATDR 1255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15472.4086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LMP3_ECTSI3.610e-30100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A382Q2U4_9ZZZZ6.800e-650.00Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A097EQD2_9GAMM1.100e-544.44Glutaminase n=1 Tax=Francisella sp. FSC1006 TaxID=... [more]
A0A432FEB4_9BACT1.630e-548.15Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A103Y1S0_CYNCS4.840e-542.59Ankyrin repeat-containing protein n=2 Tax=Cynara c... [more]
M1VJX3_CYAM15.810e-541.82Similar to Raf/ATN-like protein kinase, with ankyr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15472contigEcto-sp13_S_contig15472:222..2839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score122.5
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D8LMP3
Model size528
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size528
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.7190747-CDS-Ecto-sp13_S_contig15472:221..3501681462821.7190747-CDS-Ecto-sp13_S_contig15472:221..350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15472 222..350 -
1681462821.7286353-CDS-Ecto-sp13_S_contig15472:878..9811681462821.7286353-CDS-Ecto-sp13_S_contig15472:878..981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15472 879..981 -
1681462821.7384279-CDS-Ecto-sp13_S_contig15472:1632..18021681462821.7384279-CDS-Ecto-sp13_S_contig15472:1632..1802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15472 1633..1802 -
1681462821.7489955-CDS-Ecto-sp13_S_contig15472:2713..28391681462821.7489955-CDS-Ecto-sp13_S_contig15472:2713..2839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15472 2714..2839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15472.4086.1prot_Ecto-sp13_S_contig15472.4086.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15472 222..2839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15472.4086.1

>prot_Ecto-sp13_S_contig15472.4086.1 ID=prot_Ecto-sp13_S_contig15472.4086.1|Name=mRNA_Ecto-sp13_S_contig15472.4086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANL
NAKTRIEHTPLHLACRYGHYNIALALLAKGAEVDSRDNELNTPLHKASSN
GHANLCLELVKRGATVSAVNASNYTPLHWAAYKGRTAAVEALLQVGADLT
AVAARGTTSLHAASYYGHLESVVIM*
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mRNA from alignment at Ecto-sp13_S_contig15472:222..2839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15472.4086.1 ID=mRNA_Ecto-sp13_S_contig15472.4086.1|Name=mRNA_Ecto-sp13_S_contig15472.4086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15472:222..2839- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGAGATTTGGAAAGCGTCCAGAAGTACATCGCGACGGGGGGAGACCT
GGAGCGGATGGATTGGGACAACTGCACGGCGTTGCATATCGCGTGCGCGG
GAGCTTTCTCCCAGGTCGCGCAACTGGTGAGCTAAAAAGCTTCGGTAGTA
TTTATCACACCCATTTTTTGGTTGCACAAGTACTACGTAAAGATTTTTGC
GTGTTGAAGTTGCAAACTGCAAGAAGGCCCGGGGGTACACCCACCCAATA
GCCCTCAAGAAATTGATGTCTTCTGATGGTATTTGGTGGGTTAGGGTTGC
GGCTGAGGGTATTTGCCGGGCCGTTTAAAATATCTGCACGCTGTGTTGGG
CGCCAGGTAGTCTGATGTTATTTGCTGGGGTAGGTTTACGGTTGGGGTTA
TTCGCCGGGATGTTTAAAATGTTTTCACTTTGTATCGGGCGCTAGGTCGC
CTCTTTGCGCGGCTGGACGTGGGTGTATGTTTACAGGAGCGTCTTCAAGA
CCACGGCCATAAATGCGTTCTTGTACGGTACGTCTTCACGTTCAACTTAT
TAAGTAAGCAATGTTTTCCGCATCCACAACGCGACGTCCGCAAGAGGGCC
GGGCTTTACCACGGTTGTGCGGTTGATTGCTAAAGATCGCTTTCCAAGTA
AAGAGGGTACGGGGCGATACCCGATCGGCACGTCCGCGGCCATGCATTGC
TCTCTCTCGACGAGATATTTCCGAAACCACCCTTTGCGACACTTGGCAGA
ACCCAGGGCTGCTGCTTTAACACCCCACCCCACCTCTGTTGTTCCGTCTC
TGCAACAGCATGTTTGGTAAGAGGGTTACGTCCTGTGGGAGGACCAGCAA
GGGCCTGGCCTAGTCCCATACTCCTTTGGCGCTGTTTCCTGACGGCCAAC
ACCCATACAAGCCACAGGTCGCCGCTTTGGTTGACCCGCTCCCTCTCGGC
TCCTCGCATAACCCTTACCCTCAAAACACGCCTTCTCTTTTGAAACCTTG
CGCATTCACGCGCTGTGGCGCTGGCACTCGGTCGCAGCTCATCAACAAGG
GGGCGAATCTCAATGCGAAGACTCGCATCGAACACACGCCGTTGCATCTA
GCGTGTCGCTACGGCCACTACAACATCGCTCTGGCCTTGCTAGCGAAGGG
GGCGGAGGTGGACTCGAGGGATAACGAGCTCAACACTCCACTACACAAGG
CGTCAAGGTGAGTGCGGCGGCGTCGTGTTTTCGGTGTCGGTCGGCATGCA
AGCGGCCGCGTTGTGCCTTCTCTGTGCTTTTTTCTTTTTTCTTTTTCTTT
TTGTTCTGTTCTTTTTTCTGTGCAGGGGTACGGCGTTGTGCTTTCTCTGT
GTTGTGTTTTTTATTTTTTCTCTCGTTGTTGTTTCGCGCATGACATCGGT
GCGCTCGTAGATGAAGCAGTTCGCTCCAAGCAGCGTTGCGCTGGACCCTG
TTGTCCCCGAAAGGATTGAGTACTGTTTTGTACAGCGTGATTTGAGACGC
CTCAGGGAAAAATCGCTCAGGGAGCAGGAAGAATGTTGAGATTTTAGGAG
GAGGTTGCGTGCGGTGCGATCTCGTCCTGGACATTTATTATCTGTGTGTG
TCCCGTGTCATGGACAAGGACAAGGAAACATTAGTAAGGGTGGTTGGCGT
TTGTTTAGTTTTTTCAATCTTTGGTTTGGGGGAAGGCATTTCATGCTCCG
ATTTGCCTGCGTCGTCGTTTTCGTGCCTTCTCGTCATCTCGCGCTTCGGT
CTCCGCCAACCCACTAACATTGTCGCCCCCCCCCCATGCGAGGTCAATGG
TCTAACGACTACGGTATGCACGACTATGAGTACCCCCCCCCATGCTCTCG
CTCGTCAGCAACGGCCACGCCAACCTGTGCCTGGAGCTAGTAAAGAGAGG
GGCAACGGTTAGCGCGGTGAACGCGTCGAATTACACACCGCTTCACTGGG
CCGCGTATAAGGTGCGCAACGGCGAAGAGAGAAAGAGGAAGTATGTCTTA
TTACAGTGGGGAACCCTGTCTTCGCCCGCTTAACATAAGTAGATCTCAAA
CAAGTCACAATCTACGAGGGAGCCTTAGGTGATAGCTTTCGAGCTTTGTG
ATAAAATGTGAAAATATATGGCATGAAATATGCATTCTGTTAACGTTCTT
CTGATTTTTCTCAAGGAAATTTGTCGTGGACACCAGGCTCTTTGTCCCCA
ACGGGAGGTGAGCATCTCGACAAAAGCCATGCCAGGAAGGAAGGCCCTGT
GCCGCCCCGACAAACCAACCCTGGGCGTGTACATGTGGCTGCTATCTGCC
GTTAGAGGGGTGCTCAATCGTGTTGGCGGTGATGATCCTTCCTCCCTCCG
AATGGAGCGGTAGGGGATTCCCCCCCCCCCACCCCCCCCCCCCACCCCCC
CCCCCCACACACAAAAAAAAAAACTAGTGGGGATCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCGAACGTCGTCTTGCCTTTTGTCAGGGTCGCACGGC
AGCCGTGGAGGCATTACTGCAGGTGGGAGCGGACCTTACGGCGGTGGCAG
CAAGAGGGACGACGTCGCTTCACGCCGCCAGCTACTACGGACACCTCGAG
TCGGTGGTGATAATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15472:222..2839-

>mRNA_Ecto-sp13_S_contig15472.4086.1 ID=mRNA_Ecto-sp13_S_contig15472.4086.1|Name=mRNA_Ecto-sp13_S_contig15472.4086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15472:222..2839- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGAGATTTGGAAAGCGTCCAGAAGTACATCGCGACGGGGGGAGACCT
GGAGCGGATGGATTGGGACAACTGCACGGCGTTGCATATCGCGTGCGCGG
GAGCTTTCTCCCAGGTCGCGCAACTGCTCATCAACAAGGGGGCGAATCTC
AATGCGAAGACTCGCATCGAACACACGCCGTTGCATCTAGCGTGTCGCTA
CGGCCACTACAACATCGCTCTGGCCTTGCTAGCGAAGGGGGCGGAGGTGG
ACTCGAGGGATAACGAGCTCAACACTCCACTACACAAGGCGTCAAGCAAC
GGCCACGCCAACCTGTGCCTGGAGCTAGTAAAGAGAGGGGCAACGGTTAG
CGCGGTGAACGCGTCGAATTACACACCGCTTCACTGGGCCGCGTATAAGG
GTCGCACGGCAGCCGTGGAGGCATTACTGCAGGTGGGAGCGGACCTTACG
GCGGTGGCAGCAAGAGGGACGACGTCGCTTCACGCCGCCAGCTACTACGG
ACACCTCGAGTCGGTGGTGATAATGTGA
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