mRNA_Ecto-sp13_S_contig1547.4085.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1547.4085.1
Unique NamemRNA_Ecto-sp13_S_contig1547.4085.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1547.4085.1 vs. uniprot
Match: D8LNA2_ECTSI (MORN repeat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA2_ECTSI)

HSP 1 Score: 546 bits (1408), Expect = 7.730e-193
Identity = 315/346 (91.04%), Postives = 320/346 (92.49%), Query Frame = 3 
Query:   69 MNSALDKLYNELLEQADNEPEEELTEAERAKRFLSEKQITIEKLKEISLXXXEEDARRKEAARLRELERKRQQAAIEKRIEQEKKEKELIRYIEENTMRFWKRDITGKRKETGILYFGESKRQGEAWVPHGHGEYRAHGEIIYEGQFFDGAMXXXXXXXXXXXXXXXXXXXXXXXXXXXTIISEEDNSKRKAIYWRDRRVCFLDELLPGCRLQLLSDEFVRDADGAALIVGPTHREGRYRLRLDNGTEKLVRLDNERFRLLRQKPRVITLDNILGSTTYGLLYNYDGDQAKPQTSAHRENYYYPDLWAGREKAKREKQAELDLEMKRSQILARRQVERDEQAAANQ 1106
            MNSALDKLYNELLEQADNEPEEELTEAERAKRFL+EKQITIEKLKEISL   EEDARRKEAARLR            KRIEQEKKEKELIR+IEENTMRFWKRDITGKRKETGILYFGESKR+GEAWVPHGHGEYRAHGEIIYEGQFFDGAM   XX   XXXXXXXXXXXXXXXXXXX IISEEDN+KRKAIYWRDRRVCFLDEL+PGCRLQLLSDEFVRDADGAALIVGPTHREGRYRLRLDNGTEKLVRLDNERFRLLR KPRVITLD ILGSTTYGLLYNYD DQA PQTSAHRENYYYPDLWAGREKAKREKQAELDLEMKRSQILARRQVERDEQAAANQ
Sbjct:    1 MNSALDKLYNELLEQADNEPEEELTEAERAKRFLAEKQITIEKLKEISLKKLEEDARRKEAARLRXXXXXXXXXXX-KRIEQEKKEKELIRHIEENTMRFWKRDITGKRKETGILYFGESKRRGEAWVPHGHGEYRAHGEIIYEGQFFDGAMHGEXXLLMXXXXXXXXXXXXXXXXXXXXIISEEDNNKRKAIYWRDRRVCFLDELMPGCRLQLLSDEFVRDADGAALIVGPTHREGRYRLRLDNGTEKLVRLDNERFRLLRHKPRVITLDTILGSTTYGLLYNYDDDQANPQTSAHRENYYYPDLWAGREKAKREKQAELDLEMKRSQILARRQVERDEQAAANQ 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1547.4085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNA2_ECTSI7.730e-19391.04MORN repeat domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1547contigEcto-sp13_S_contig1547:11294..16692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1107
Hectar predicted targeting categoryother localisation
Exons10
Ec32 ortholog descriptionMORN repeat domain-containing protein
Ec32 orthologEc-04_004600.1
Cds size1038
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1547.4085.1prot_Ecto-sp13_S_contig1547.4085.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1547 11362..16692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.5865316-UTR-Ecto-sp13_S_contig1547:11293..113611681462821.5865316-UTR-Ecto-sp13_S_contig1547:11293..11361Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1547 11294..11361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.597973-CDS-Ecto-sp13_S_contig1547:11361..114991681462821.597973-CDS-Ecto-sp13_S_contig1547:11361..11499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 11362..11499 +
1681462821.607646-CDS-Ecto-sp13_S_contig1547:12203..122811681462821.607646-CDS-Ecto-sp13_S_contig1547:12203..12281Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 12204..12281 +
1681462821.6181903-CDS-Ecto-sp13_S_contig1547:12921..129771681462821.6181903-CDS-Ecto-sp13_S_contig1547:12921..12977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 12922..12977 +
1681462821.628549-CDS-Ecto-sp13_S_contig1547:13229..133541681462821.628549-CDS-Ecto-sp13_S_contig1547:13229..13354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 13230..13354 +
1681462821.6391866-CDS-Ecto-sp13_S_contig1547:13576..136951681462821.6391866-CDS-Ecto-sp13_S_contig1547:13576..13695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 13577..13695 +
1681462821.6492252-CDS-Ecto-sp13_S_contig1547:14154..142511681462821.6492252-CDS-Ecto-sp13_S_contig1547:14154..14251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 14155..14251 +
1681462821.6594281-CDS-Ecto-sp13_S_contig1547:14745..149171681462821.6594281-CDS-Ecto-sp13_S_contig1547:14745..14917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 14746..14917 +
1681462821.6692247-CDS-Ecto-sp13_S_contig1547:15668..157691681462821.6692247-CDS-Ecto-sp13_S_contig1547:15668..15769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 15669..15769 +
1681462821.6813016-CDS-Ecto-sp13_S_contig1547:16241..163421681462821.6813016-CDS-Ecto-sp13_S_contig1547:16241..16342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 16242..16342 +
1681462821.689569-CDS-Ecto-sp13_S_contig1547:16641..166921681462821.689569-CDS-Ecto-sp13_S_contig1547:16641..16692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1547 16642..16692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1547.4085.1

>prot_Ecto-sp13_S_contig1547.4085.1 ID=prot_Ecto-sp13_S_contig1547.4085.1|Name=mRNA_Ecto-sp13_S_contig1547.4085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
MNSALDKLYNELLEQADNEPEEELTEAERAKRFLSEKQITIEKLKEISLK
KLEEDARRKEAARLRELERKRQQAAIEKRIEQEKKEKELIRYIEENTMRF
WKRDITGKRKETGILYFGESKRQGEAWVPHGHGEYRAHGEIIYEGQFFDG
AMHGEGRLLIHNGNVWAGQFWKDMVQGLGTIISEEDNSKRKAIYWRDRRV
CFLDELLPGCRLQLLSDEFVRDADGAALIVGPTHREGRYRLRLDNGTEKL
VRLDNERFRLLRQKPRVITLDNILGSTTYGLLYNYDGDQAKPQTSAHREN
YYYPDLWAGREKAKREKQAELDLEMKRSQILARRQVERDEQAAANQ
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mRNA from alignment at Ecto-sp13_S_contig1547:11294..16692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1547.4085.1 ID=mRNA_Ecto-sp13_S_contig1547.4085.1|Name=mRNA_Ecto-sp13_S_contig1547.4085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1547:11294..16692+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACCCCAGCCGCGGGCGTGTTGTTTCCAGCAACCCTTTGTCACCCAC
CACCTGCTTCCCTAGACCATGAACTCGGCCCTGGACAAACTGTACAATGA
GCTCCTGGAGCAAGCGGACAACGAGCCCGAGGAGGAGCTCACAGAAGCCG
AGCGCGCGAAGCGCTTCCTATCCGAGAAGCAAATCACAATCGAGAAGCTC
AAAGAGGTGGGTTGTCTAGTTGTTTTGCTCAACGAAATTCAACTCACAGT
TCATTCACGACCGGAGGGCATCATCTACTCGAGGAAATTCCATACCAACA
TCAAGACCTTGTTGACCAAAAAGGATGCACCTGCTGCTGTTTCGGTTTTG
TCTGGAATCCAAAAGTGCAAACACTGGCGGTGTACCTCTCGGTCCATCTC
GGCAAGACCGTCGCGAGCCCACCGGGACAACTATTTCCCTCCTGCAAAAG
TGTCCGTGCGTTGGTATTTGGCCGCGTTTATTGCCCCCCAGTACTTTTCT
GAGCTACGGGGGTGCTGACAAACATCAGGCAGACCTGAACTCACAAGAGC
ATCCGACTGTCCTCCCTTAATGTACCACCCAGATCTACACCCGGCATTCA
GTGATAAATTAGAACAGAGTACACAGCCTCGCATCCAGCAGTTGATCACC
CCGACTCACTTCGGAAGGCCTTCAACGTGTCCCCTTCGTCTATCGTCGTA
GTGTTCCAGCATCGCGGACGGGGATCTTTCATTGCATGCATGTTCATTGT
TGAAAAAAAACATGACTGTCTCCGATTGCTGAATTTGTTTGAATACCCGA
CGAGCAACCAATTGCACGAAAAGTGAGTGCGTGAGATTGCCTCTCAACAT
GACATGACCAGTTGACTCACGATTACTTCTCTCTGCTGCGTGCTGAATGT
TCGTCTACAGATAAGCTTGAAGAAGCTGGAAGAGGATGCACGAAGGAAAG
AAGCTGCGAGATTGCGCGAACTTGAGCGCAAGCGTCAAGTGAGTTCAAAG
TTCCGAAGAACGCAGCACCTCCCCAATTTATCCGATGGACATATTCACTC
GCTCTCTGGGTTTGTGTGTGTCGTCTCTGGATCCTCGCTTTCGCAGCAGG
GTATAGACAGGGCTTTTTTATCGCATTGATTCCTGTCGCTGATGCATTAA
TTCGATCTTACCGAGTGCTCCGTGCTCAGTACCGCGGTAGATTGTATGAT
ACTTCGAAAAAATAGAGTGAATACAATGTCGACACGCACTCGGGTTCATG
ATGCCTGCATCTTTATTCGAAGGGTGCATCAGTATGTCATTGAAACCGGG
CGCTTTAGAAGCCAGTCTGACTCACGCTGCGTACAGACTCTTGTACCGCG
GGTGTGCATAGCCTATCGCCTAGAGTTGATGGGACGAAACAAGAACTACG
AAACAAGTGGCACAGACGATGTTCCCGTTGAATTCCTGCCGTTCGCCAAA
CTCTGGTTGTGCTAGCACTATAGAGGACGTGGACATGGTCTGATTGCTTT
CGTTGCGTTCTCCTCCTGCTTCTCTCTTGAGAATGTCACGACGCCACGAG
CGGGTCGCCCAACTTACCCAACGGCAACGGCTGGCGTACCTTTGCTCTGC
TTTACCTATGATTTTCGTCTTGTTGGAGCAGGCCGCCATCGAAAAGCGCA
TCGAGCAGGAGAAGAAAGAAAAGGAGCTAATAAGGTAACCGATGCTCTCC
CCACCCGAGACAGACACAGAACGTATCAGCAAGCAGTCACTCGTTGGCGA
AGCCGTCCGCAAAACATTAAACTAAACATATCAATAGCATTTGTCGGAAG
ATAGGATGGCGGGGATATTGCGCAGCGCTACCACCCGATGAAATAACCCA
GTGACTGTCATTCGCGGTACACGTGTTCTATCTGATTCACAAAATTTCAC
TGGTGCACATGTGTGTGCCTGTCGTTTCCAAGACAGGTATATCGAGGAGA
ACACGATGCGGTTCTGGAAGCGTGATATCACGGGAAAGCGCAAGGAGACG
GGCATTCTCTACTTCGGGGAATCGAAGCGCCAGGGAGAAGCCTGGGTACC
GCACGGCCACGGTGGGTCATCGTCAGTGCTTCCGAAAATCGAACTATCTT
TGTCACGACGTACGTGTGTATGAGCGTTCTAGCTGAGCAGCATGAGACGT
ATGTCCGCTGCCCTCTTTTTGAGGAGCAGCTGAGTGCTTTATCATTCGAT
AAGTCTTGGCAACCTAGACGGCCCCACCAACGGCCGCGGCAACTCGTGGT
GAAAGTACCCTTTGAACGATGGTCGTCGTTTAGGAGAGTATCGCGCTCAT
GGCGAGATAATCTACGAGGGACAGTTCTTCGACGGCGCCATGCACGGCGA
AGGCCGCTTGCTAATACACAACGGGAATGTCTGGGCGGGCCAGTTCTGGA
AGGTGAGGGGCGAAGACAACAAAACAAACATACTCTGGGCACTGATGCCG
TAGCTTGGCTTTCGGCATTGTGTTTTGTCGGCCTCACCGACACGGGCGTA
TTGCTGCTGCTGCCATTGACGCTCTGTCTTTCACTCTAACCGAGCTCCCA
ATCGCCCGAGCACGAGCCATAACTTCGCACCCAATCTACGAGACCAGCAG
CGAGTTAGCTACAACGCAGATTATTGGCAACAAGATCGAGGTCACCTGGT
CTCGTGCTTTTTCCTCCGTGTTCGACTTCGTGTGGGTAGGTCAAGTTTGA
GGTACACGAATATTGCCGAAACGAGCTGGTATTCACGACTTTGGTGGTTG
TCTTACAACGTATCATTGCGTAGGCAGAAGAGTTAAACATTTCGGCTATT
CAGTCTGTCCTACTATGAACATTGGTTTTTTCATCTCCTTTTACTCGTGT
TTCCACGATAGGACATGGTGCAAGGCTTGGGAACGATCATCTCCGAGGAG
GACAACAGCAAGCGAAAGGCCATCTACTGGCGAGACCGCAGAGTCTGCTT
CCTCGACGGTGAGTCACGGTCGACATCCACATGGACGGGGAGCGGCACTA
TTTCATTGATGCCGGCCTATTCATATAGCATATTAGTCTATGTAGCGGAG
CACGAATCTTATCCTTTCATTTTCGGCAGGCGAAGCCACCCGCATAATTT
GACTCGTTGTGGTGTTTTTTTTTGTGACATCTTCGATCCTCAGCAGTAAA
TCGAATCCGGTAGGATCTACTGTCTATGACGTTGATCCACCGGCTGTAAC
ATTTACGGTGTAACATCGCCACATCGAGTGACCTGCTTCGGCCGCGGTCA
GTCGTAAACGTAGCAAAGCTCGGGTTTCGAGTCTCCCTGACATACATCCA
TGTGCTTCTCCCGAAAAAGCGTGACATGCGGTCTACAGTATGACGCCACC
CCATCCCCCTACATCAGACAACCCGTCCCGTCTACTCGCCCAATTCATTG
TTCCCTGACCTCGCGCCCAAATATTGTGAAAACCACGCGCGACGGTGATA
AGAGCTTTTGCCCGGGTGTAGGCTCCAACTGCTCTCGGACGAGTTTGTAA
GGGATGCCGACGGCGCGGCGTTAATTGTCGGCCCCACGCACCGGGAGGGC
CGGTATCGGCTAAGGCTCGACAATGGGACGGAGAAGCTGGTGAGGCTGGA
CAACGAGAGATTTCGGCTGCTCAGGTGTGAAACTGGCACGAAGAAACTGT
TTTTTTGTTTTTCGTCTTCACTTCAAATCGGCGCTCACAGCACTTGTGCC
GTTTTCTCTAACCCGTGGTCACACAGAAGAGCCCCTCTCTACCCTCCCCT
CCTGCGGTACTTTGCCTTCCAATTGCAATGCGAGAAGAGGTCAGCAGTCC
ATTTCCTCTATGTACACACGAACGAGCGCTATCCACTAGGCCAGGAGCGG
AAGCGAGAGAAAAACTCACTTTACACCTTTACAAGGAAAGCTCGCTAACG
CCGGGATTCAAACCCCTGATCTGACCTCTAGAAGGTCTCGAGGATAATTT
CTGCCATACCGTACACGCATAGATACTTCACCACCCCAAAAACATAATCG
AGCTGCGTCATCACCTCAACATGATGCACTGCAACCAATCTACCCGATGG
AAGCAGTGACTTCGTCCAGAGCTGTTGCACGTGAATATTCCCACTCATAG
TGGGGGTCATACGGTCATGGCGTGTGGGGCCGGTGCTAAACGTGCTGGCG
TGGCCGAGGGCGCGGCTAAGCTAAGCAGGCGAAGGAGGTGTCGTCGAAGG
AGGTAGATTTTGGGAGTAGGACATGCGGCGTGAAAGAAGAGAGTCACCGA
GCCCTAAGGAGCTGCCATCAAGTTTGATAGTACCAAAACGTATGCATACA
CAACGTCGAACGATACCGCCGGTAATCGACCCCCCTGCCCCACCCATGAC
TGTCGCGCAAAATGGGTGTGTACAGGCAAAAACCACGGGTCATTACACTG
GACAATATTTTAGGGTCCACCACGTACGGGCTGCTGTATAACTACGATGG
CGACCAGGCCAAGCCGCAGACGTCAGGTAGGTGTATACGAGAACGCTTGA
CGGTTCGATCAGACGAAACGTCGTCGATAGCTGCTGAGGAGGCTATTGCT
TGGATATGTGCATATTTGTGATCATCTGTACTTGTTTCTTGCCGCCAAAT
TAACAACTAGGGTGTTCCCGGACACGTTCCTTGCTCCCTCTGGCATCACC
GAATCCGCGGTGTAACGGCAGACTTTCAGCGGTTGGTCTCTCCTCCAACC
CTTTTCGTTGCTGCAAAGTTTCAGTCCAGTTTTGAGGGCTGTCTCGGATG
GATGTGGTGCTATATATTAACACCTTTGAGTTGGGATCATCGAACAGGAG
TTGCCAGAGGGTTCGCGGTAGATACATTCACTCTCGCTTTGATCGATGAG
GCCTACATTGATTGGAAGTGGTTTGCTTCGGTCTGGTCGTTCTGTTCGTT
TAATGCCCCTACTCAAAAACGATTGCACCTGTCGCCGAAAACAAACAGCC
CACCGTGAGAACTACTACTACCCCGATCTGTGGGCCGGCCGGGAGAAGGC
TAAACGAGAAAAACAGGCGGAGCTCGACCTCGAGATGAAACGGTCGCAGG
TCGGTTTCAATCCACGCATGAACAGGAAAATCCGACAATTAATGAATCCC
TGAAAAGTTTGGCTTTGATATACCGCGGGCTGTCGCTACGACCTTCATGT
AAAAGACATCAATCAGCTGATTGTAGACCACATCGCCAAGTATAGGCATG
AAATATATCTTCATGGTAAGATGAACGTCTCGTAGGGACGCGATGATGGC
ATACTATTTTATTACATATAGTCTACCCAGAATCACTATGTGAAACTTAC
TACTGTTCGTCCCCCTGATTGCGTGTTGGTCAAATCGAATCGAACCAGAT
ACTTGCCCGGAGACAGGTGGAGAGGGACGAGCAAGCAGCGGCGAACCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1547:11294..16692+

>mRNA_Ecto-sp13_S_contig1547.4085.1 ID=mRNA_Ecto-sp13_S_contig1547.4085.1|Name=mRNA_Ecto-sp13_S_contig1547.4085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1547:11294..16692+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTCGGCCCTGGACAAACTGTACAATGAGCTCCTGGAGCAAGCGGA
CAACGAGCCCGAGGAGGAGCTCACAGAAGCCGAGCGCGCGAAGCGCTTCC
TATCCGAGAAGCAAATCACAATCGAGAAGCTCAAAGAGATAAGCTTGAAG
AAGCTGGAAGAGGATGCACGAAGGAAAGAAGCTGCGAGATTGCGCGAACT
TGAGCGCAAGCGTCAACAGGCCGCCATCGAAAAGCGCATCGAGCAGGAGA
AGAAAGAAAAGGAGCTAATAAGGTATATCGAGGAGAACACGATGCGGTTC
TGGAAGCGTGATATCACGGGAAAGCGCAAGGAGACGGGCATTCTCTACTT
CGGGGAATCGAAGCGCCAGGGAGAAGCCTGGGTACCGCACGGCCACGGAG
AGTATCGCGCTCATGGCGAGATAATCTACGAGGGACAGTTCTTCGACGGC
GCCATGCACGGCGAAGGCCGCTTGCTAATACACAACGGGAATGTCTGGGC
GGGCCAGTTCTGGAAGGACATGGTGCAAGGCTTGGGAACGATCATCTCCG
AGGAGGACAACAGCAAGCGAAAGGCCATCTACTGGCGAGACCGCAGAGTC
TGCTTCCTCGACGAGCTTTTGCCCGGGTGTAGGCTCCAACTGCTCTCGGA
CGAGTTTGTAAGGGATGCCGACGGCGCGGCGTTAATTGTCGGCCCCACGC
ACCGGGAGGGCCGGTATCGGCTAAGGCTCGACAATGGGACGGAGAAGCTG
GTGAGGCTGGACAACGAGAGATTTCGGCTGCTCAGGCAAAAACCACGGGT
CATTACACTGGACAATATTTTAGGGTCCACCACGTACGGGCTGCTGTATA
ACTACGATGGCGACCAGGCCAAGCCGCAGACGTCAGCCCACCGTGAGAAC
TACTACTACCCCGATCTGTGGGCCGGCCGGGAGAAGGCTAAACGAGAAAA
ACAGGCGGAGCTCGACCTCGAGATGAAACGGTCGCAGATACTTGCCCGGA
GACAGGTGGAGAGGGACGAGCAAGCAGCGGCGAACCAA
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