mRNA_Ecto-sp13_S_contig1546.4080.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1546.4080.1
Unique NamemRNA_Ecto-sp13_S_contig1546.4080.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1546.4080.1 vs. uniprot
Match: D7FH64_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH64_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.550e-7
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 2 
Query:   26 MEAEFCSQQSKAGMIRMFGRKCAHPGCVK*P 118
            MEAEFCSQ SKAGMIR+FG+KC HPGC+K P
Sbjct:    1 MEAEFCSQHSKAGMIRVFGKKCDHPGCIKQP 31
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BLAST of mRNA_Ecto-sp13_S_contig1546.4080.1 vs. uniprot
Match: D7FH53_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH53_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.420e-6
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 2 
Query:   26 MEAEFCSQQSKAGMIRMFGRKCAHPGCVK*P 118
            ME EF SQ SKAGMIR+FG+KCAHPGCVK P
Sbjct:    1 MEVEFSSQHSKAGMIRVFGKKCAHPGCVKQP 31
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1546.4080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH64_ECTSI1.550e-780.65EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FH53_ECTSI2.420e-680.65EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1546contigEcto-sp13_S_contig1546:7623..8607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score68.9
Seed ortholog evalue4e-09
Seed eggNOG ortholog2880.D8LD34
Model size985
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size807
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.2550876-UTR-Ecto-sp13_S_contig1546:7622..78001681462821.2550876-UTR-Ecto-sp13_S_contig1546:7622..7800Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1546 7623..7800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.269652-CDS-Ecto-sp13_S_contig1546:7800..86071681462821.269652-CDS-Ecto-sp13_S_contig1546:7800..8607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1546 7801..8607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1546.4080.1prot_Ecto-sp13_S_contig1546.4080.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1546 7801..8607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1546.4080.1

>prot_Ecto-sp13_S_contig1546.4080.1 ID=prot_Ecto-sp13_S_contig1546.4080.1|Name=mRNA_Ecto-sp13_S_contig1546.4080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
MVDVVSKRCGHPGCTKQPYYGEDGTKKPEFCAKHAKPGMTNVKDKRCAHP
GCIKRPSYGTNDSRRAQFCAQHAQQGMVDVRSKTCGHPGCTKAPSYGKTG
SKKAEFCSQHSERGMINVKNRRCGHPRCTKHPTYGKVGRKTAEFCAQHAK
LGITNVKVKRCGHPGCTKRPSHGNYGSKKAEFCAQHAQQDMVDVVKPRCD
HLECTKGPSHGKDGSKTAEVCAQHAKPGMTNVKDKTCAHPGCMKYPSCGT
NDSRRAQFCTQHAQQGMVD
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mRNA from alignment at Ecto-sp13_S_contig1546:7623..8607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1546.4080.1 ID=mRNA_Ecto-sp13_S_contig1546.4080.1|Name=mRNA_Ecto-sp13_S_contig1546.4080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=985bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1546:7623..8607+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATCGTATGGCGAAGCCGTCATCATGGAGGCGGAGTTCTGCTCTCAGC
AATCCAAAGCAGGAATGATCCGTATGTTCGGTAGGAAATGCGCCCATCCC
GGGTGCGTCAAGTAACCGTCATACGGTACAGCCGGCAGTAAGAAGGCGGA
GTTCTGTGTACCGCACGCGCAGGAGGGCATGGTCGATGTCGTCAGCAAGA
GGTGCGGCCATCCAGGGTGCACGAAACAGCCGTACTATGGCGAAGACGGC
ACCAAGAAGCCGGAATTTTGTGCCAAGCACGCAAAGCCAGGGATGACAAA
CGTGAAAGATAAGAGGTGCGCTCATCCAGGGTGCATAAAGCGTCCGTCGT
ATGGAACAAACGATAGTAGAAGGGCGCAGTTCTGTGCCCAGCACGCGCAA
CAGGGCATGGTCGATGTTCGCAGTAAGACGTGCGGCCATCCAGGGTGCAC
AAAGGCGCCGTCATATGGTAAAACCGGCAGCAAGAAGGCGGAGTTCTGCT
CCCAGCACAGCGAACGAGGTATGATAAACGTGAAAAACAGGAGGTGCGGA
CATCCCAGGTGCACGAAGCACCCAACGTATGGGAAAGTCGGCAGGAAGAC
GGCTGAATTTTGTGCCCAGCACGCCAAGTTAGGGATAACGAACGTAAAAG
TCAAAAGGTGCGGTCATCCAGGATGCACGAAGCGTCCGTCCCATGGAAAC
TACGGTAGCAAGAAGGCGGAGTTCTGTGCGCAGCACGCGCAACAGGATAT
GGTCGACGTCGTGAAGCCAAGGTGCGATCATCTAGAGTGCACGAAGGGGC
CGTCACATGGCAAAGATGGCAGCAAGACGGCTGAGGTTTGTGCGCAGCAC
GCCAAGCCAGGGATGACAAACGTGAAAGATAAGACGTGCGCTCATCCAGG
GTGCATGAAGTATCCGTCGTGTGGAACAAACGATAGTAGAAGGGCGCAGT
TCTGTACCCAACACGCGCAACAGGGCATGGTCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1546:7623..8607+

>mRNA_Ecto-sp13_S_contig1546.4080.1 ID=mRNA_Ecto-sp13_S_contig1546.4080.1|Name=mRNA_Ecto-sp13_S_contig1546.4080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1546:7623..8607+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGATGTCGTCAGCAAGAGGTGCGGCCATCCAGGGTGCACGAAACA
GCCGTACTATGGCGAAGACGGCACCAAGAAGCCGGAATTTTGTGCCAAGC
ACGCAAAGCCAGGGATGACAAACGTGAAAGATAAGAGGTGCGCTCATCCA
GGGTGCATAAAGCGTCCGTCGTATGGAACAAACGATAGTAGAAGGGCGCA
GTTCTGTGCCCAGCACGCGCAACAGGGCATGGTCGATGTTCGCAGTAAGA
CGTGCGGCCATCCAGGGTGCACAAAGGCGCCGTCATATGGTAAAACCGGC
AGCAAGAAGGCGGAGTTCTGCTCCCAGCACAGCGAACGAGGTATGATAAA
CGTGAAAAACAGGAGGTGCGGACATCCCAGGTGCACGAAGCACCCAACGT
ATGGGAAAGTCGGCAGGAAGACGGCTGAATTTTGTGCCCAGCACGCCAAG
TTAGGGATAACGAACGTAAAAGTCAAAAGGTGCGGTCATCCAGGATGCAC
GAAGCGTCCGTCCCATGGAAACTACGGTAGCAAGAAGGCGGAGTTCTGTG
CGCAGCACGCGCAACAGGATATGGTCGACGTCGTGAAGCCAAGGTGCGAT
CATCTAGAGTGCACGAAGGGGCCGTCACATGGCAAAGATGGCAGCAAGAC
GGCTGAGGTTTGTGCGCAGCACGCCAAGCCAGGGATGACAAACGTGAAAG
ATAAGACGTGCGCTCATCCAGGGTGCATGAAGTATCCGTCGTGTGGAACA
AACGATAGTAGAAGGGCGCAGTTCTGTACCCAACACGCGCAACAGGGCAT
GGTCGAT
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