mRNA_Ecto-sp13_S_contig15447.4074.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15447.4074.1
Unique NamemRNA_Ecto-sp13_S_contig15447.4074.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15447.4074.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 3.100e-53
Identity = 98/104 (94.23%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:    3 VVAGAYHMSVLVSALEPSRWALGYRSVEQAVAGAHVSGSPFRLVVVEGAVAANASLAFGVGIDSPLAGGVFGTSAFTVRARDSMGNRVSSGSTGDFNVEVFLAD 314
            V+AGAYHMSVLVS+LEPSRWALGYRSVEQA+AGAHVSGSPFRL+VVEGAVAANASLAFGVGIDSPLAGGVFGTSAFT+RARDSMGNRVSSGSTGDFNVE+FLAD
Sbjct: 1686 VMAGAYHMSVLVSSLEPSRWALGYRSVEQAMAGAHVSGSPFRLLVVEGAVAANASLAFGVGIDSPLAGGVFGTSAFTIRARDSMGNRVSSGSTGDFNVELFLAD 1789
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BLAST of mRNA_Ecto-sp13_S_contig15447.4074.1 vs. uniprot
Match: A0A7S2C9F1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9F1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.120e-6
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 3 
Query:    3 VVAGAYHMSVLV--SALEPS-RWALGYRSVEQAVAGAHVSGSPFRLVVVEGAVAANASLAFG-------VGIDSPLAGGVFGTSAFTVRARDSMGNRVSSGSTGDFNVEV 302
            ++AG Y MSVLV  SA  P+    LGY ++E+A AG+H+ GSPF++V+  GA   +   AFG        GI +P AGGV      T+ ARD   N V  G   +F V++
Sbjct:  277 IIAGVYTMSVLVGTSATGPAPHLDLGYSNIEEATAGSHIRGSPFKVVIHPGATFGSTCTAFGENTYRADAGIATP-AGGV------TIVARDKHSN-VRPGGGDEFVVKL 378
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15447.4074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIF9_ECTSI3.100e-5394.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2C9F1_9STRA5.120e-640.91Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15447contigEcto-sp13_S_contig15447:857..2226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score176.8
Seed ortholog evalue4.9e-42
Seed eggNOG ortholog2880.D8LIF9
Model size314
KEGG koko:K04437,ko:K06572
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.regulation of membrane repolarization during atrial cardiac muscle cell action potential
EggNOG OGsCOG5069@1,KOG0518@2759
Cds size291
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.5665305-CDS-Ecto-sp13_S_contig15447:856..9321681462820.5665305-CDS-Ecto-sp13_S_contig15447:856..932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15447 857..932 -
1681462820.578108-CDS-Ecto-sp13_S_contig15447:1211..13731681462820.578108-CDS-Ecto-sp13_S_contig15447:1211..1373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15447 1212..1373 -
1681462820.5871274-CDS-Ecto-sp13_S_contig15447:2150..22031681462820.5871274-CDS-Ecto-sp13_S_contig15447:2150..2203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15447 2151..2203 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.5987167-UTR-Ecto-sp13_S_contig15447:2203..22261681462820.5987167-UTR-Ecto-sp13_S_contig15447:2203..2226Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15447 2204..2226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15447.4074.1prot_Ecto-sp13_S_contig15447.4074.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15447 857..2203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15447.4074.1

>prot_Ecto-sp13_S_contig15447.4074.1 ID=prot_Ecto-sp13_S_contig15447.4074.1|Name=mRNA_Ecto-sp13_S_contig15447.4074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MSVLVSALEPSRWALGYRSVEQAVAGAHVSGSPFRLVVVEGAVAANASLA
FGVGIDSPLAGGVFGTSAFTVRARDSMGNRVSSGSTGDFNVEVFLAD
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mRNA from alignment at Ecto-sp13_S_contig15447:857..2226-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15447.4074.1 ID=mRNA_Ecto-sp13_S_contig15447.4074.1|Name=mRNA_Ecto-sp13_S_contig15447.4074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1370bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15447:857..2226- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTCGTGGCGGGAGCTTATCACATGAGCGTCCTAGTCAGCGCGCTCGAG
CCGTCGCGTTGGGCCCTGGGCTACAGGCAAGAATATGTCGTGTCACCAGG
GAGAATCTCAACAACAAGCGTGGCAACATTGGTTCTTGTTCACGACACCA
TCCGCAGCAAAACGCTCCGCATTTGAAGAGGATGAAGCGCTCTTCTCGGT
TCGTCACTGCAACGCGCGAAAGTTCAAAATCGGCGGAAGAGGTTGCGTGT
TATCTACCTTAGAAGGGAGTTTGTATGGCATGTAGTTCGGTCTGTCACTT
CACCAATCCGAATAGCCTCGGGAAACTACGAAGGGCCAATCTGTACCACG
TTGGGGACCTCGGGCATGAGGTTGACATTAACACTTTTCCCTACAGACAT
CACCTTTAGGACTGACTTGACGCCCCGCCGGAAATATTTTTTTATCCTCA
AAGCCTTTCACGCGCACAAATCTGTAGAAAACATATGCACTGTGAGGAGA
ACTTCAAGTATTTTCGGAAACATGAAGGAGGGACAGCAAAACCCCCAAAG
TCTCAGATGACAACCGTATGAACCTGTGACGAACCCGGTTTACGATGTTC
AAATACCCCGTCGTTGAGAAAGCATGCGAGGTACTGATGGCGTAGCAACA
CCCCGAAACAGTTGCACAAGAAAGCGCACCACGCTCGGTCGGAACACACA
ACCGGGCGAAATGGGTCGTTGCCACAGTGGGAACTCATTACACTATTTTT
TTGCGTTTGGAGATCCGATCGACGACGGCGTGTTCAGCTCTCTCTGGTAG
AAGTGATGCAACTCTCGTACCGGACCTTTCTTGTATTTTCTGGGCATCAT
CAGGAGCGTCGAGCAAGCGGTGGCCGGGGCGCACGTGTCCGGTAGTCCGT
TCCGGTTGGTGGTGGTGGAGGGAGCCGTGGCTGCCAACGCTTCCTTGGCA
TTCGGGGTAGGGATCGATTCGCCCCTGGCCGGAGGCGTGTTCGGCACGTC
CGCGTTTACGGTCAGGCAAGGGAGACCACCCCCTGCTGAAAGGGTCAAGA
CATCTTCAAACATAGCATAGACCTAAAGATTACCGCAAAAGCAAGGAGTT
GCCTTTTGCGTTTCCTCCGTTCTCCTCACCCCCCACGACACACATGGAAG
AAATTTGCAAGCACCACAACACAAGCAACATCTCTACGATGCACAGGAAC
GGTTCCGTGTCAACAGGGACGCGGGGGTAGTAGTCAAATGTCCTGGGCAA
ACACCAAACAACTGTCCCTTCCAACACACCATGGTCATAAACAGAGCGAG
GGATTCGATGGGGAACCGCGTGTCCTCCGGAAGCACGGGGGACTTTAACG
TGGAGGTATTCCTGGCGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15447:857..2226-

>mRNA_Ecto-sp13_S_contig15447.4074.1 ID=mRNA_Ecto-sp13_S_contig15447.4074.1|Name=mRNA_Ecto-sp13_S_contig15447.4074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15447:857..2226- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGTCCTAGTCAGCGCGCTCGAGCCGTCGCGTTGGGCCCTGGGCTA
CAGGAGCGTCGAGCAAGCGGTGGCCGGGGCGCACGTGTCCGGTAGTCCGT
TCCGGTTGGTGGTGGTGGAGGGAGCCGTGGCTGCCAACGCTTCCTTGGCA
TTCGGGGTAGGGATCGATTCGCCCCTGGCCGGAGGCGTGTTCGGCACGTC
CGCGTTTACGGTCAGAGCGAGGGATTCGATGGGGAACCGCGTGTCCTCCG
GAAGCACGGGGGACTTTAACGTGGAGGTATTCCTGGCGGAC
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