prot_Ecto-sp13_S_contig1544.4071.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1544.4071.1
Unique Nameprot_Ecto-sp13_S_contig1544.4071.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length211
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1544.4071.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 1.980e-123
Identity = 198/211 (93.84%), Postives = 201/211 (95.26%), Query Frame = 0 
Query:    1 MQWLWAGALASTVGNAMASTSLDRSAAEILAFGSCGSIGSGACSSSIRSGRAGPQHVSRISAEPATMSLTTRGPVDSGGSSAMRPGGKATAAGTRAAGLPSFWAAFSPSRAGRGRALVSALSAKADSDESGVMDKKAEFYGNSAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLL 211
            M+WLWAGALAST+GN MASTSLDRSAAE LAFGSCGSIGSGACSSSIRSGRAGPQHVSRISAEPATMSLTTR P DSG SS+MRPGG ATAAGTRAAGLPSFWAA SPSRAGRG ALVS LSAKADSDESGVMDKKAEFYGN APGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLL
Sbjct:    1 MRWLWAGALASTMGNVMASTSLDRSAAETLAFGSCGSIGSGACSSSIRSGRAGPQHVSRISAEPATMSLTTRAPADSGDSSSMRPGGGATAAGTRAAGLPSFWAALSPSRAGRGGALVSPLSAKADSDESGVMDKKAEFYGNLAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLL 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1544.4071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4I1_ECTSI1.980e-12393.84Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 160..211
e-value: 1.5E-5
score: 26.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..211
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.564

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1544contigEcto-sp13_S_contig1544:13101..16693 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1544.4071.1mRNA_Ecto-sp13_S_contig1544.4071.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1544 13101..16693 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1544.4071.1 ID=prot_Ecto-sp13_S_contig1544.4071.1|Name=mRNA_Ecto-sp13_S_contig1544.4071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
MQWLWAGALASTVGNAMASTSLDRSAAEILAFGSCGSIGSGACSSSIRSG
RAGPQHVSRISAEPATMSLTTRGPVDSGGSSAMRPGGKATAAGTRAAGLP
SFWAAFSPSRAGRGRALVSALSAKADSDESGVMDKKAEFYGNSAPGAVAP
EGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRK
AGEYDHASTLL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf