mRNA_Ecto-sp13_S_contig1544.4071.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1544.4071.1
Unique NamemRNA_Ecto-sp13_S_contig1544.4071.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1544.4071.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 1.980e-123
Identity = 198/211 (93.84%), Postives = 201/211 (95.26%), Query Frame = 1 
Query:    1 MQWLWAGALASTVGNAMASTSLDRSAAEILAFGSCGSIGSGACSSSIRSGRAGPQHVSRISAEPATMSLTTRGPVDSGGSSAMRPGGKATAAGTRAAGLPSFWAAFSPSRAGRGRALVSALSAKADSDESGVMDKKAEFYGNSAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLL 633
            M+WLWAGALAST+GN MASTSLDRSAAE LAFGSCGSIGSGACSSSIRSGRAGPQHVSRISAEPATMSLTTR P DSG SS+MRPGG ATAAGTRAAGLPSFWAA SPSRAGRG ALVS LSAKADSDESGVMDKKAEFYGN APGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLL
Sbjct:    1 MRWLWAGALASTMGNVMASTSLDRSAAETLAFGSCGSIGSGACSSSIRSGRAGPQHVSRISAEPATMSLTTRAPADSGDSSSMRPGGGATAAGTRAAGLPSFWAALSPSRAGRGGALVSPLSAKADSDESGVMDKKAEFYGNLAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLL 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1544.4071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4I1_ECTSI1.980e-12393.84Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1544contigEcto-sp13_S_contig1544:13101..16693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size633
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionSmr protein/MutS2 C-terminal
Ec32 orthologEc-07_000530.1
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.3708682-CDS-Ecto-sp13_S_contig1544:13100..132011681462820.3708682-CDS-Ecto-sp13_S_contig1544:13100..13201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 13101..13201 +
1681462820.38219-CDS-Ecto-sp13_S_contig1544:15084..155221681462820.38219-CDS-Ecto-sp13_S_contig1544:15084..15522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 15085..15522 +
1681462820.3933642-CDS-Ecto-sp13_S_contig1544:16599..166931681462820.3933642-CDS-Ecto-sp13_S_contig1544:16599..16693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 16600..16693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1544.4071.1prot_Ecto-sp13_S_contig1544.4071.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1544 13101..16693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1544.4071.1

>prot_Ecto-sp13_S_contig1544.4071.1 ID=prot_Ecto-sp13_S_contig1544.4071.1|Name=mRNA_Ecto-sp13_S_contig1544.4071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
MQWLWAGALASTVGNAMASTSLDRSAAEILAFGSCGSIGSGACSSSIRSG
RAGPQHVSRISAEPATMSLTTRGPVDSGGSSAMRPGGKATAAGTRAAGLP
SFWAAFSPSRAGRGRALVSALSAKADSDESGVMDKKAEFYGNSAPGAVAP
EGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRK
AGEYDHASTLL
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mRNA from alignment at Ecto-sp13_S_contig1544:13101..16693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1544.4071.1 ID=mRNA_Ecto-sp13_S_contig1544.4071.1|Name=mRNA_Ecto-sp13_S_contig1544.4071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3593bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:13101..16693+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTGGCTATGGGCCGGGGCGCTGGCCTCGACAGTGGGGAATGCCAT
GGCTTCGACGTCGCTGGACAGAAGTGCGGCTGAAATCCTGGCTTTTGGAA
GGTATTCTTGTGTTGCATGTTGAAGGGTCGTATCATGGTTTACGTCAACT
CTCTCTCCTGTCCCCTGGTACATAGCTCGCAAGAGCATCAGCAGAGCGAA
AGCACTGTGTGCGAATGCTGTGCCCACGGCAGTAGAAGGAGCACCTGGGG
ATGAGTAGTTTTGTTGATTCATGTGCTTTGTTTTCTCGCCCCTTGTCCTC
CGGTTGAGCACGGTGACCTGGTCACACGAGCGGGTCCCGCTACCCAAAAT
GTTGTTGGGGTCCATCGTCTAATCGGAACGAGGGATAGTGTAGGATCCAA
AGCGAACTGGCTTCCTTCGTGCACCACACGCCTTGGTGTAGTCGCCTGCT
GCTTTTGCTGCATCGTCGAGGCTTCGCGGTCGCGGATTCTGTAGGGGGGT
TTCCTTGACAGCAGGGCGAAACATGCGTGATTGTCGAACGTAACTTAGCG
GCCGATGTAGTAACTTGGAATAGATGATCCCCTCAACATCGCAAAAATGA
CCAAGTATTATCTCTACAGCTGCATCTTTCACCCACCCTACCGGTAGCTG
GAGCATCTTTGTAGCTCTCGCTGGTGTGTGTATGCATGTTGAACTGAAGC
AAAACGGGCATTGTCAAAAATTGTGCTGTTTTTTGCCAACACCTCACAGA
CCTGCTATTTAGTACATGCTGTCCTTGATAAATCAGTAGTCGAAGCAGCA
AAATGATCTATAACAGCAAACATACGGGATTAAGTTTCAATCCGTGCTTG
GGGGTTAGGGTTGGGGTTAGGGATGGAAAAACCGTCGATGGCATTGTTGT
ATGCATGTAGCGTTGTACGTGTGCATACATACTACACAGCAGTGGTCAGC
AGGCATATTGCACCACGCACTGCTGTTAGCCTTCCAAGTGCTGGCCATTC
GGGCCACTCGACAAGGGTGTGCAACATGGGCACGAAAGTTCGGTCAGGTA
GCCAAGTTTCCTGTGTGCTTCCAGTATTTTCGGAGGTAGGCACATTTTGA
GGTTGATATAGCATATTTATTGGCGTACAGTACGTACGTAGACCGGGATT
GGTAATGGGCGATCCTGCTGCACTGTTTTTTTTGCGTTACAAACATCACA
GTTAACCGGATGGCTGTGTTGGCGGCTGTTGCAGGCTGAACACGACCGTC
CCAGTGAGGATGAAACAATGGTAGTATGCTAGTGAAGATGGTTACATTAG
GTTGCATTAGATACGACACCCCCTGAACCATTCCCAAAGCTCGAGTACGC
TGCAGCCGAAAACGGTAGCGGATGGGAACGTCTCGTCGGGAGCTTCCCGA
AAATGGATCACTTGGGTGTGGCATCCTCTTCGTCATGCCGTAAATCGAGC
TTTTACTCTCGACCCAAGGGGTGTTATCTTGAGCAGCCTATGGTAACCCG
GTCATCCATCTGTCACACGGCTGATGGCCAGCAAGGCTATTCGGGTAAAT
GTAAGACGGTGCAGCAGCTGCGTGAAGAGTGCCTCCCGAGAGTGCAACGC
TGGACCTAAAAGTAACGACAGCAAACAGATTTACTATTAGATGCGATGCA
TTTGTCTTTTTAGGTTGACGCAAACTCAAAGCGTAAAACTGCGTGGCACA
GAACGGATGCTGTTCTGAGACAATTCGTTGTTTTGGTGATGAGGTCTGTG
CGATGAGTATCGCCGGTGGTGAGGTTATGACCCAAAACGGGCTCGAAAAA
AGCAACAACGCGAGGTTCCGGCGAATCGTGAAGGAAGGGTGCACCGCTCT
GGTACATTCTGCCCCTTTTTTTCAATGTTGTGTTTTCTGTAGGGTTTTTT
GTTTTCCCTTGACCAAAACGCCTCTTGTAAATCCTCTTCGTGTCGCTGTT
CCTCCCGCTGGCGCTCACAAAAACGTGCACGAAGCTGTGGTAGTATCGGA
AGCGGGGCCTGCAGCAGCAGCATCAGGAGCGGCAGAGCAGGCCCTCAGCA
CGTCAGCAGGATCTCCGCCGAGCCTGCGACGATGTCGCTCACGACGAGGG
GCCCCGTGGACTCGGGAGGTTCATCCGCGATGAGGCCGGGGGGGAAGGCA
ACAGCGGCGGGGACGAGGGCGGCGGGTCTCCCGAGCTTTTGGGCGGCGTT
CTCGCCGTCGAGAGCGGGCCGTGGGAGGGCGCTTGTGTCCGCCTTGTCGG
CCAAGGCGGATTCCGACGAGAGCGGGGTAATGGACAAGAAGGCGGAGTTT
TACGGGAACTCGGCGCCGGGCGCGGTGGCCCCCGAGGGTGCGGAGAAGCA
GGACGAGGCCGCGGTGGAGTACGCGGTTGGGGGGGACTGGGAGAAGTCCG
TCCAGCTGATCAAGGCCATGCGGTGAGGGTGGGGGTGGGGGTGGGGGGGT
GGAGGGGCGGAGAAATTGACACACACACACAGAGACAGGCAGAGACAGGG
ACAGAGAGTATAGGCAGAAGCGGGTGACAAAATTTTGTAGTAGGGGCTGC
TGGTGCGCGGCGGTATCCCTCGCCGACCAAATGGGTGACCTGTATTGGAG
AATGTAGAGATTCTTCTGGCATTGGCCACCCAGGGCTCCGAAGCAACGAA
ACTGGCGGAGGAATTCTTGGCTATACAACCGCAATCAACCAAACAGGAAC
ATTTAACAGTGCACTGTCCCTCCGATGCCATCTTCTCGGTTATGGTGTAG
GCAGCTGACCTCTGTTTTTTTGTCCATATTAAGGTTGTGATCCAAATATT
CCACGGCGAGGAGCATCTCAAGTTGGGCGCTCTCCTGTCAGTAGTGAGGT
CGTCCCGTCTCGACACTAGCAACCCGTGCGAACTCATTGTGTGCATAGGC
CATGCGGCATCTCCTCGTGTGCTTGCCTTGGGAGGAAATACAACACACGT
TGATATCAGTATCGCAGGGAAAAGCGAATGAAATCCAAGCAAAGTAGTGA
TGAAGAGAAGATAATCTCCTCCAGATTAGGACTTTCAAATTGCGCAACAA
GTTCATCGTATCAAAATCTATGTTGAGGATATAAATCACGCAATCTCAGA
AGAGCGAACCCAAGAGAAGAGCGCCAAGCGTAACTGTAGTAGTAGTAGGC
GTAACCCCGTCACCTCTGCAGCACGTGCCCGGCACAACTACCCTGTGACA
AGAGCCACCCGTGACAGACAGGGGTGTAAAATAGCGCCTCTTTGAGGTGA
AAGCCTGAACCTTCCGAGCAAAAGAAAGATGCACATCCCGAGCTCGACGG
CGCTTACGAAGTCCTCCGAAGCACATTCCAGAAGGCAACAGTCGATCTCT
GAAGCGCAACCTTTGCCTCAGTGACGAGAGTCAGCCTCGTGCTGTTTTGA
CGGTTTCTGGTGAGATGGCCAATACTGCTGTTGTACCCTATCCCATGATT
CAGCTAAATGCCGCCCCTTACATACCCGTTTTTGTCCTCGTTCGTTCAGG
GATAGCGATTTCGTTCCCTCGGTGAACGCGTACGTGGCGACCATCGAGGC
TTGCCGGAAGGCGGGCGAGTACGACCACGCGTCCACCCTCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1544:13101..16693+

>mRNA_Ecto-sp13_S_contig1544.4071.1 ID=mRNA_Ecto-sp13_S_contig1544.4071.1|Name=mRNA_Ecto-sp13_S_contig1544.4071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:13101..16693+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTGGCTATGGGCCGGGGCGCTGGCCTCGACAGTGGGGAATGCCAT
GGCTTCGACGTCGCTGGACAGAAGTGCGGCTGAAATCCTGGCTTTTGGAA
GCTGTGGTAGTATCGGAAGCGGGGCCTGCAGCAGCAGCATCAGGAGCGGC
AGAGCAGGCCCTCAGCACGTCAGCAGGATCTCCGCCGAGCCTGCGACGAT
GTCGCTCACGACGAGGGGCCCCGTGGACTCGGGAGGTTCATCCGCGATGA
GGCCGGGGGGGAAGGCAACAGCGGCGGGGACGAGGGCGGCGGGTCTCCCG
AGCTTTTGGGCGGCGTTCTCGCCGTCGAGAGCGGGCCGTGGGAGGGCGCT
TGTGTCCGCCTTGTCGGCCAAGGCGGATTCCGACGAGAGCGGGGTAATGG
ACAAGAAGGCGGAGTTTTACGGGAACTCGGCGCCGGGCGCGGTGGCCCCC
GAGGGTGCGGAGAAGCAGGACGAGGCCGCGGTGGAGTACGCGGTTGGGGG
GGACTGGGAGAAGTCCGTCCAGCTGATCAAGGCCATGCGGGATAGCGATT
TCGTTCCCTCGGTGAACGCGTACGTGGCGACCATCGAGGCTTGCCGGAAG
GCGGGCGAGTACGACCACGCGTCCACCCTCCTC
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