mRNA_Ecto-sp13_S_contig1544.4069.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1544.4069.1
Unique NamemRNA_Ecto-sp13_S_contig1544.4069.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1544.4069.1 vs. uniprot
Match: A0A6H5KQA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA9_9PHAE)

HSP 1 Score: 697 bits (1798), Expect = 3.150e-251
Identity = 363/404 (89.85%), Postives = 372/404 (92.08%), Query Frame = 1 
Query:   76 MRPPLAKALAACEHLVLTDRAVRRWIGLPFS--SMLAKRGGTCCFVRSRSIATATTSRRGKGGAPEGGERGSAAISVHDIADLNKDISGFVGDLGDPDFDATPSPPPARAVSGSRRNAQAEREVSPAAFQESQTRLTLADHPGNVEELVGERDEVIPVDDNWSTSLVKGYLETVERKKSSGLRARRSVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNRREDELLDRLCEGGYDAVVYNPSGFSNRGLRVVVPTAASTHHKITDASPASNNSGTAVHTEPADDGFPQSQQSRVDDPRQKTWDDNVPRHSGSGGALTYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVSSVLDGSR 1281
            MRPPLAK LAAC+HLVLTDRAVRRWIGLPFS  SMLAKRGGTCCF RSRSIAT+TTSR GKGGAPE GERGSA   VHDIADLNKDISGFVGDLGDPDFD TPSPPPARAVSGSRRNAQAERE +PAAFQESQTRLTLADHPG VE L GERDE IP+DD+WSTS VKGYLE VERK SSG RARRSVLVLNGPACFIAGTLASTGEPRG VASSMEDAAQEFNLSLTVCTSNR EDELLDRLCEGGYDAVVYNPSGFSN+GLRVVVPTAA TH  +TDASPASN+SG A HTEPA+DGFPQSQQSRVDDPR KTW DNVPRHSGSG AL YGLERAGCPVVIISPGRDGNLGANML STSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVSSVLDG R
Sbjct:    1 MRPPLAKTLAACKHLVLTDRAVRRWIGLPFSTTSMLAKRGGTCCFARSRSIATSTTSRGGKGGAPEDGERGSAEFWVHDIADLNKDISGFVGDLGDPDFDTTPSPPPARAVSGSRRNAQAEREDTPAAFQESQTRLTLADHPGKVEGLAGERDEEIPMDDDWSTSFVKGYLEAVERKSSSGSRARRSVLVLNGPACFIAGTLASTGEPRGAVASSMEDAAQEFNLSLTVCTSNR-EDELLDRLCEGGYDAVVYNPSGFSNQGLRVVVPTAAPTHQMMTDASPASNSSGNAAHTEPAEDGFPQSQQSRVDDPRHKTWHDNVPRHSGSGSALEYGLERAGCPVVIISPGRDGNLGANMLQSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVSSVLDGFR 403
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1544.4069.1 vs. uniprot
Match: D7G4H9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H9_ECTSI)

HSP 1 Score: 676 bits (1745), Expect = 4.000e-243
Identity = 357/406 (87.93%), Postives = 367/406 (90.39%), Query Frame = 1 
Query:   76 MRPPLAKALAACEHLVLTDRAVRRWIGLPF----SSMLAKRGGTCCFVRSRSIATATTSRRGKGGAPEGGERGSAAISVHDIADLNKDISGFVGDLGDPDFDATPSPPPARAVSGSRRNAQAEREVSPAAFQESQTRLTLADHPGNVEELVGERDEVIPVDDNWSTSLVKGYLETVERKKSSGLRARRSVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNRREDELLDRLCEGGYDAVVYNPSGFSNRGLRVVVPTAASTHHKITDASPASNNSGTAVHTEPADDGFPQSQQSRVDDPRQKTWDDNVPRHSGSGGALTYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVSSVLDGSR 1281
            MR PLAKALAAC+H V TDRAVRRWIGLPF    SS+LAKRGGTC FVR RSIATAT  R GKGGA EG +RGSAAISVHDIADLNKDISGFVGDLGDPDFD  PSPPP RA SGSRR+AQAERE SPAAFQESQ RLTLADHPG  E L G+RDE IP+DD+WST LVKGYLET ERK SSGLRARR VLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNR EDELLDRLCEGGYDAVVYNPSGFSN+GLR VVPTAA  H  +TDASPASNNSGTAVHTEPADDGFPQ QQSRVD+PRQKTWDDNVPRHSGSG AL YGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAV SVLDGSR
Sbjct:    1 MRKPLAKALAACKHPVPTDRAVRRWIGLPFNTTRSSVLAKRGGTCYFVRRRSIATATPPRWGKGGASEGDDRGSAAISVHDIADLNKDISGFVGDLGDPDFDTIPSPPPDRAASGSRRDAQAEREESPAAFQESQPRLTLADHPGKFEGLHGQRDEEIPMDDDWSTPLVKGYLETEERKNSSGLRARRPVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNR-EDELLDRLCEGGYDAVVYNPSGFSNQGLRAVVPTAAQIHRTMTDASPASNNSGTAVHTEPADDGFPQPQQSRVDNPRQKTWDDNVPRHSGSGSALEYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVWSVLDGSR 405
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1544.4069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQA9_9PHAE3.150e-25189.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4H9_ECTSI4.000e-24387.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1544contigEcto-sp13_S_contig1544:2675..5429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1284
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionDehydroquinase, class II
Ec32 orthologEc-07_000550.1
Cds size1284
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.2465796-CDS-Ecto-sp13_S_contig1544:2674..30801681462820.2465796-CDS-Ecto-sp13_S_contig1544:2674..3080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 2675..3080 +
1681462820.255417-CDS-Ecto-sp13_S_contig1544:3439..37291681462820.255417-CDS-Ecto-sp13_S_contig1544:3439..3729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 3440..3729 +
1681462820.2698596-CDS-Ecto-sp13_S_contig1544:4196..42701681462820.2698596-CDS-Ecto-sp13_S_contig1544:4196..4270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 4197..4270 +
1681462820.2781894-CDS-Ecto-sp13_S_contig1544:4915..54291681462820.2781894-CDS-Ecto-sp13_S_contig1544:4915..5429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 4916..5429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1544.4069.1prot_Ecto-sp13_S_contig1544.4069.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1544 2675..5429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1544.4069.1

>prot_Ecto-sp13_S_contig1544.4069.1 ID=prot_Ecto-sp13_S_contig1544.4069.1|Name=mRNA_Ecto-sp13_S_contig1544.4069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=428bp
MRAGRRPIASREHCTLTSSRLQFIPMRPPLAKALAACEHLVLTDRAVRRW
IGLPFSSMLAKRGGTCCFVRSRSIATATTSRRGKGGAPEGGERGSAAISV
HDIADLNKDISGFVGDLGDPDFDATPSPPPARAVSGSRRNAQAEREVSPA
AFQESQTRLTLADHPGNVEELVGERDEVIPVDDNWSTSLVKGYLETVERK
KSSGLRARRSVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSL
TVCTSNRREDELLDRLCEGGYDAVVYNPSGFSNRGLRVVVPTAASTHHKI
TDASPASNNSGTAVHTEPADDGFPQSQQSRVDDPRQKTWDDNVPRHSGSG
GALTYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAE
GIIAGFSGAVSYRLAMAAVSSVLDGSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1544:2675..5429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1544.4069.1 ID=mRNA_Ecto-sp13_S_contig1544.4069.1|Name=mRNA_Ecto-sp13_S_contig1544.4069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2755bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:2675..5429+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGCTGGGAGAAGGCCGATAGCATCTCGAGAGCACTGCACACTAAC
CAGCAGTCGGCTGCAGTTTATCCCAATGAGACCGCCGTTGGCGAAGGCTC
TGGCTGCTTGCGAGCACCTCGTCCTAACGGACAGGGCTGTGCGTCGCTGG
ATTGGGTTGCCGTTCAGCAGTATGTTAGCCAAACGCGGCGGAACTTGTTG
TTTCGTCCGCAGCAGATCGATCGCCACTGCAACGACATCGAGACGGGGCA
AGGGGGGTGCACCGGAAGGAGGCGAGCGCGGCAGCGCGGCAATTTCGGTC
CACGATATCGCTGACCTGAACAAGGATATATCTGGCTTTGTGGGGGACTT
GGGCGATCCAGACTTCGATGCCACCCCCAGCCCTCCTCCCGCTCGTGCCG
TCTCAGGTGTGATGATTGAATTGTTGTTGTTGCCTTCACAGGTACAACAG
TTGCGACCTCTGCTCGTCACCTTCCACTGCAACACCCACACCCGCACAAC
TAACGCGAACACCTTCCGTGGTCACTGGCCAACTACCCAGAAATGGGCAC
TTGCATGGAAAAAATGTTGTATTATCCTGAGACACTTCGGGCCTCGAGAG
GCCGTCATTATCACCTCTTGGTAGACGCGGTTGAGCACTTGTGTCTTACA
GAACCGCGGCTTCAACAATCTGTGCGTTGTGAACTCCCTCACGGGCATGT
TTGCGCGTGCACAGACCCCTATGACACCTCGATATCTCGTGCTTTTTTGT
ACGCCCAATGCTAAGGGTCCCGGCGGAATGCCCAAGCCGAGAGAGAAGTC
AGCCCGGCTGCGTTTCAAGAATCGCAAACCCGGCTCACGCTGGCTGATCA
CCCCGGAAATGTCGAGGAGCTCGTCGGAGAGCGCGACGAAGTAATCCCCG
TGGATGATAACTGGTCCACGTCGTTGGTCAAAGGGTACCTGGAGACCGTA
GAGCGAAAGAAATCAAGTGGGCTAAGAGCAAGAAGGTCCGTCCTGGTGCT
AAACGGACCGGCGTGTTTTATCGCTGGGACTCTAGCCAGCACCGGAGAAC
CGCGGGTGAGTGAACGGAGTGAGGGTCAAAGAAAATCACTTGCGCTCGCG
ATACAGCAGTGTCTTTCCCTCTTTTTCGAGCAGTTTTGTTCGTGCGTGAA
GCCCGTTCTCCAGTGCAGACAAGGTTTTGCCGGAACGGGCATTGAAAGTT
TCAGCCTTGCTTCGCCTCAATGAAATGAACGCGCCTGGTCGCCTAGTCCC
AACACCCTGGAGGCGGCAACGATACTCTTGGGGGACTCTGTGAAACATCG
TTGTGAGCTTCTGCCATTGTGATACCATGAGTGTTTTTGTTTCTCGGGGC
GGCGCGACGCTTCGAAAAGTTGTTCCCGCACGTCTCTCAGGAGTTTCACC
CATGGCCACCCTTGGCGCCCTCAATTCCATGTCGACCAAAACGTTGTCTA
GTATCCTGTCCCATCTCTTGTCTCGTACTTCTTCTGATCGTGTGCAATTT
TACTTGTTTTTGTTCCGAGAAGGGAGTGGTTGCGAGTTCAATGGAGGACG
CCGCCCAAGAGTTCAACCTGTCGCTGACTGTCTGCACTTCGAACCGGTGC
GTAATCCCTGCATCACACTAAGTAGTATATGGGAGGCAACCGACTGATAC
AGCAGGCGAAGGGTAAAGCCACAAACCTATTCCCCGCAACGGCCAGAGAG
TGCCGGGTAGGCGAGCGCCTCTATTGGAAGCAGGTTGCTCACGCCTCGGT
CAACCTCCCCCACACTCGAATTGGAAGGTGCTTTGTCCAATGCCTGGCTC
GAGATGCGAAGCAGCGCACGGTGATCGCTTGGATAACGAATTCATGTTTG
TTGGTTTTGGCGGAGTGTGTCGGCATAATATCGATTTCTTGTAGCTGTAC
ATATGTTCATGCTATGTGCAACTATTTAAAATTCTACGTTGTTGCGTGGC
ACCCTCTGGCATGCAGTTCCTCGTGAACGAACTACGGTTTTCCTGCGCCC
TTCTCCCAATAGGATTTATGCAAAGGAAGCCGCGATGTCGGGCTAGGTTT
AAGACCGCACTGTTGGGGTACAAACGCTAGAGGCTGGGCTCATTGGCCAT
GACACGCAAGGAGTGATTTTCCGTCTGAGCATGTACAAGTCATGTTTGTT
TTTCGGCAATACCCCGGGCTGCTGTACGCATAGAAACTGATGGCTTCGTG
CTTGTGCCCGTCTGTGTTGTTCGTAAACGGTACGATGGGAGCAGAGAAGA
TGAGCTGTTGGACCGACTTTGCGAGGGGGGCTACGATGCTGTCGTCTACA
ACCCCTCAGGGTTCAGCAACCGGGGGTTGCGAGTGGTGGTCCCAACCGCC
GCCTCAACTCACCACAAGATAACGGACGCATCTCCTGCATCAAACAACTC
AGGCACCGCCGTTCACACCGAGCCGGCCGACGACGGTTTCCCACAATCGC
AACAATCACGGGTTGATGATCCGCGACAGAAAACGTGGGATGACAACGTC
CCGCGACACAGTGGGAGCGGGGGCGCCCTAACGTACGGTCTAGAGCGTGC
GGGATGCCCCGTCGTAATCATTTCACCTGGACGAGATGGAAATCTGGGAG
CAAACATGCTGCCATCCACCAGCCGTGGACCTGATGTGGACCTCGGGTGT
CGGTCGGAGCGAGGAGCGGAAGGAATAATTGCAGGCTTCTCGGGGGCTGT
GTCTTACCGATTGGCGATGGCGGCAGTATCGAGCGTATTGGATGGATCCC
GATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1544:2675..5429+

>mRNA_Ecto-sp13_S_contig1544.4069.1 ID=mRNA_Ecto-sp13_S_contig1544.4069.1|Name=mRNA_Ecto-sp13_S_contig1544.4069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1284bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:2675..5429+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGCTGGGAGAAGGCCGATAGCATCTCGAGAGCACTGCACACTAAC
CAGCAGTCGGCTGCAGTTTATCCCAATGAGACCGCCGTTGGCGAAGGCTC
TGGCTGCTTGCGAGCACCTCGTCCTAACGGACAGGGCTGTGCGTCGCTGG
ATTGGGTTGCCGTTCAGCAGTATGTTAGCCAAACGCGGCGGAACTTGTTG
TTTCGTCCGCAGCAGATCGATCGCCACTGCAACGACATCGAGACGGGGCA
AGGGGGGTGCACCGGAAGGAGGCGAGCGCGGCAGCGCGGCAATTTCGGTC
CACGATATCGCTGACCTGAACAAGGATATATCTGGCTTTGTGGGGGACTT
GGGCGATCCAGACTTCGATGCCACCCCCAGCCCTCCTCCCGCTCGTGCCG
TCTCAGGGTCCCGGCGGAATGCCCAAGCCGAGAGAGAAGTCAGCCCGGCT
GCGTTTCAAGAATCGCAAACCCGGCTCACGCTGGCTGATCACCCCGGAAA
TGTCGAGGAGCTCGTCGGAGAGCGCGACGAAGTAATCCCCGTGGATGATA
ACTGGTCCACGTCGTTGGTCAAAGGGTACCTGGAGACCGTAGAGCGAAAG
AAATCAAGTGGGCTAAGAGCAAGAAGGTCCGTCCTGGTGCTAAACGGACC
GGCGTGTTTTATCGCTGGGACTCTAGCCAGCACCGGAGAACCGCGGGGAG
TGGTTGCGAGTTCAATGGAGGACGCCGCCCAAGAGTTCAACCTGTCGCTG
ACTGTCTGCACTTCGAACCGCAGAGAAGATGAGCTGTTGGACCGACTTTG
CGAGGGGGGCTACGATGCTGTCGTCTACAACCCCTCAGGGTTCAGCAACC
GGGGGTTGCGAGTGGTGGTCCCAACCGCCGCCTCAACTCACCACAAGATA
ACGGACGCATCTCCTGCATCAAACAACTCAGGCACCGCCGTTCACACCGA
GCCGGCCGACGACGGTTTCCCACAATCGCAACAATCACGGGTTGATGATC
CGCGACAGAAAACGTGGGATGACAACGTCCCGCGACACAGTGGGAGCGGG
GGCGCCCTAACGTACGGTCTAGAGCGTGCGGGATGCCCCGTCGTAATCAT
TTCACCTGGACGAGATGGAAATCTGGGAGCAAACATGCTGCCATCCACCA
GCCGTGGACCTGATGTGGACCTCGGGTGTCGGTCGGAGCGAGGAGCGGAA
GGAATAATTGCAGGCTTCTCGGGGGCTGTGTCTTACCGATTGGCGATGGC
GGCAGTATCGAGCGTATTGGATGGATCCCGATAG
back to top