mRNA_Ecto-sp13_S_contig1544.4068.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1544.4068.1
Unique NamemRNA_Ecto-sp13_S_contig1544.4068.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1544.4068.1 vs. uniprot
Match: A0A6H5KIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIR6_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 7.870e-89
Identity = 161/194 (82.99%), Postives = 169/194 (87.11%), Query Frame = 1 
Query:   16 MSCVTGAYDTSEGWRLILSKSRNAAGRGGSNSRKRELRSCL----------------WLRDHDPCTVDGLLESALVGDDKKTRLAAAGTLLAVTDALEKALWPIKEDGLSPARGATTRPGPPSSVRQVAAAAKSASDELRVLSGLAVSLAERFVPVLTAIAEGIPPPPSRVLPPQQQRNAPATGAEVDAATAAA 549
            MSC TGA+DTSEGWRLILSK RNAA RGGSNSRKRELRSCL                WLRDHD CTVDGLLESALVGDDKKTRLAA GTLLAVTD+LEK LWPIKEDGLSPARGATTRPGPPSSVRQVAAAA+SASDE+RVLSGLAVSLAERFVP+LTAIAEG+PPPPSRVLPPQQQRNA  TGA ++AATAAA
Sbjct:    1 MSCATGAHDTSEGWRLILSKIRNAADRGGSNSRKRELRSCLNRQGLQIVPVIRRAVRWLRDHDSCTVDGLLESALVGDDKKTRLAAVGTLLAVTDSLEKGLWPIKEDGLSPARGATTRPGPPSSVRQVAAAARSASDEVRVLSGLAVSLAERFVPLLTAIAEGMPPPPSRVLPPQQQRNASGTGAGMEAATAAA 194
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BLAST of mRNA_Ecto-sp13_S_contig1544.4068.1 vs. uniprot
Match: D7G4H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H8_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.450e-56
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:   16 MSCVTGAYDTSEGWRLILSKSRNAAGRGGSNSRKRELRSCLWLRDHDPCTVDGLLESALVGDDKKTRLAAAGTLLAVTDALEKALWPIKEDGLSPARGATTRPGPPSS 339
            MSC TGA+D SEGWRLILSK+RNAAGRGGSNSRKR+LRSCLWLRDHDPCTVDGLLE+ALVGDDKKTRLAAAGTLLAVTDALEKALWPI++ GLSPARGATTRPGPPSS
Sbjct:    1 MSCATGAHDNSEGWRLILSKTRNAAGRGGSNSRKRDLRSCLWLRDHDPCTVDGLLEAALVGDDKKTRLAAAGTLLAVTDALEKALWPIEKGGLSPARGATTRPGPPSS 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1544.4068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIR6_9PHAE7.870e-8982.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4H8_ECTSI1.450e-5691.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1544contigEcto-sp13_S_contig1544:1137..2595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size601
Hectar predicted targeting categoryother localisation
Exons3
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.1975615-CDS-Ecto-sp13_S_contig1544:1136..14721681462820.1975615-CDS-Ecto-sp13_S_contig1544:1136..1472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 1137..1472 -
1681462820.2062404-CDS-Ecto-sp13_S_contig1544:1604..17311681462820.2062404-CDS-Ecto-sp13_S_contig1544:1604..1731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 1605..1731 -
1681462820.2143724-CDS-Ecto-sp13_S_contig1544:2458..25801681462820.2143724-CDS-Ecto-sp13_S_contig1544:2458..2580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 2459..2580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.2224193-UTR-Ecto-sp13_S_contig1544:2580..25951681462820.2224193-UTR-Ecto-sp13_S_contig1544:2580..2595Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1544 2581..2595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1544.4068.1prot_Ecto-sp13_S_contig1544.4068.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1544 1137..2580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1544.4068.1

>prot_Ecto-sp13_S_contig1544.4068.1 ID=prot_Ecto-sp13_S_contig1544.4068.1|Name=mRNA_Ecto-sp13_S_contig1544.4068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
MSCVTGAYDTSEGWRLILSKSRNAAGRGGSNSRKRELRSCLWLRDHDPCT
VDGLLESALVGDDKKTRLAAAGTLLAVTDALEKALWPIKEDGLSPARGAT
TRPGPPSSVRQVAAAAKSASDELRVLSGLAVSLAERFVPVLTAIAEGIPP
PPSRVLPPQQQRNAPATGAEVDAATAAAGAGDKTPSPTAAVAKTT
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mRNA from alignment at Ecto-sp13_S_contig1544:1137..2595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1544.4068.1 ID=mRNA_Ecto-sp13_S_contig1544.4068.1|Name=mRNA_Ecto-sp13_S_contig1544.4068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:1137..2595- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGCCGCATGTGGGATGAGCTGCGTAACTGGGGCATACGACACCTCCGA
AGGATGGAGGCTGATCTTGTCAAAATCCAGGAATGCTGCAGGCAGAGGGG
GTAGTAACAGCAGGAAGCGGGAACTGAGGTCATGTCTGTGAGTGCCGAGC
GATGTTTGAATTAGGAACAGCAGCAGTAGACCGTGCGGCAGCCACCGCCT
CCAGAACACAGGACACTATGTGAGGCAACCCTGGCTGTTGTTGAGGCAGT
AGTTGCATGTGCCCATTGTTTTGTGCTAAGCAGGAGTTGTCACAACGGAC
GGCAAGGTTGTCATTGGGAGCCTTTCCATTCACCACACTTTCTACGTCAC
ACCGAACAACTGCCAAAGAGAAGAGAGCCAGCGAAATCCCGAGCAAGACG
TGTTTAGATGTACGAAAAACGCAGAAATCGCCAGGGCTTGCAGATGGTGC
CAGCAGTCCGATGGAAGAGGGCGGTCAGGTATCTACACGGTACCACATCG
AAAAATATGATTGCTACTCGTTTGTACATGAAGCCGAACACGGGTGTTGC
ACCCTTGGCTTCCCCGTAATGCCCGCATGCGAGCTGTGTCGCGCTGCACA
GTCGTACACCCGGAGATGCTAGCATCGCTGTCCCCTTCCTGTCTGGTGGA
GGCCGAGGACGTGTGGAGACACGGACCCGTCGCCCCCCCCCCTCAAGGTT
TTCAAACAACGATTGCTGCAACGAGTAAGTTAGAATCTCACTGCTGTAGC
ACATAGTAGATCAAGTCGGCGACGTTTGGTGCGCGATCTCTTGTTGCTTC
TACGCCCCCCATTGACCCCCTGGCGGACAACCGCACTACCTCCTCGGCGA
ATACCACGCGGCAGGTGGCTGAGAGACCACGATCCCTGTACGGTAGATGG
CTTACTCGAGTCTGCTCTCGTTGGAGACGATAAGAAGACGAGGCTCGCGG
CGGCGGGGACGCTTTTGGCCGTGACTGATGCTCTAGAAAAGGTGGGCACG
AATCATATGTCGTGATCTCCGGAGTGTGTCCCTCGCCCATAAGCCGATCC
CATGTGAAAATATCGGTACCCATTGTTCGCTTTTGCCGAACACACTTCCC
TTGGCTCGCGAATGCTTCGGTAGGCGTTGTGGCCAATCAAGGAGGACGGG
CTATCTCCCGCCCGCGGGGCGACAACTAGGCCGGGACCGCCATCGTCGGT
GAGACAAGTGGCCGCCGCGGCGAAGAGCGCCAGCGACGAGCTACGGGTGC
TCAGCGGGCTCGCGGTGTCTCTTGCCGAGCGCTTCGTGCCGGTGCTGACG
GCAATCGCTGAAGGCATACCACCACCGCCATCACGCGTACTCCCACCACA
ACAGCAGAGAAACGCCCCTGCGACAGGGGCGGAGGTGGACGCGGCGACAG
CGGCGGCGGGGGCTGGGGATAAAACGCCCTCGCCAACGGCGGCAGTTGCG
AAGACCACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1544:1137..2595-

>mRNA_Ecto-sp13_S_contig1544.4068.1 ID=mRNA_Ecto-sp13_S_contig1544.4068.1|Name=mRNA_Ecto-sp13_S_contig1544.4068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:1137..2595- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTGCGTAACTGGGGCATACGACACCTCCGAAGGATGGAGGCTGAT
CTTGTCAAAATCCAGGAATGCTGCAGGCAGAGGGGGTAGTAACAGCAGGA
AGCGGGAACTGAGGTCATGTCTGTGGCTGAGAGACCACGATCCCTGTACG
GTAGATGGCTTACTCGAGTCTGCTCTCGTTGGAGACGATAAGAAGACGAG
GCTCGCGGCGGCGGGGACGCTTTTGGCCGTGACTGATGCTCTAGAAAAGG
CGTTGTGGCCAATCAAGGAGGACGGGCTATCTCCCGCCCGCGGGGCGACA
ACTAGGCCGGGACCGCCATCGTCGGTGAGACAAGTGGCCGCCGCGGCGAA
GAGCGCCAGCGACGAGCTACGGGTGCTCAGCGGGCTCGCGGTGTCTCTTG
CCGAGCGCTTCGTGCCGGTGCTGACGGCAATCGCTGAAGGCATACCACCA
CCGCCATCACGCGTACTCCCACCACAACAGCAGAGAAACGCCCCTGCGAC
AGGGGCGGAGGTGGACGCGGCGACAGCGGCGGCGGGGGCTGGGGATAAAA
CGCCCTCGCCAACGGCGGCAGTTGCGAAGACCACG
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