mRNA_Ecto-sp13_S_contig1544.4067.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1544.4067.1
Unique NamemRNA_Ecto-sp13_S_contig1544.4067.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1544.4067.1 vs. uniprot
Match: D7G4H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H8_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.260e-35
Identity = 77/108 (71.30%), Postives = 82/108 (75.93%), Query Frame = -1 
Query:    1 KEQTRAAVAKERGAEEEPRGRWRALRVLSELFPSSTIPLLVLAEAWLDGVAEGGASVXXXXXXXXXXXXXXNDRELYRRQPGSGSDGRGPGGARAASRDGNAYSRVSI 324
            +EQTRAA+AKERGA EEP+GRWRALRVLSEL PSSTIPLLVLAEAWL GVAE GASV              NDR+LY RQPGS  DGRGPGG RA SR  NAYS VS+
Sbjct:  279 REQTRAAIAKERGAAEEPQGRWRALRVLSELLPSSTIPLLVLAEAWLGGVAEEGASVGAVGSGSGRGNGGSNDRDLYNRQPGS--DGRGPGGVRATSRGENAYSGVSV 384
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BLAST of mRNA_Ecto-sp13_S_contig1544.4067.1 vs. uniprot
Match: A0A6H5KIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIR6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.390e-33
Identity = 83/108 (76.85%), Postives = 86/108 (79.63%), Query Frame = -1 
Query:    1 KEQTRAAVAKERGAEEEPRGRWRALRVLSELFPSSTIPLLVLAEAWLDGVAEGGASVXXXXXXXXXXXXXXNDRELYRRQPGSGSDGRGPGGARAASRDGNAYSRVSI 324
            KEQTRAA+AKERGAEEEPRGRWRALRVLSEL PSSTIPLLVLAEAWL GVAEGGASV     XXXXXXX          +PGS  D RGPGG RAASRDGNAYS VS+
Sbjct:  347 KEQTRAAIAKERGAEEEPRGRWRALRVLSELLPSSTIPLLVLAEAWLGGVAEGGASVGAAGSXXXXXXXDS--------KPGSXXDXRGPGGVRAASRDGNAYSGVSV 446
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1544.4067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4H8_ECTSI2.260e-3571.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIR6_9PHAE2.390e-3376.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1544contigEcto-sp13_S_contig1544:459..783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size325
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.1735485-CDS-Ecto-sp13_S_contig1544:458..7821681462820.1735485-CDS-Ecto-sp13_S_contig1544:458..782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 459..782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1544.4067.1prot_Ecto-sp13_S_contig1544.4067.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1544 459..782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1544.4067.1

>prot_Ecto-sp13_S_contig1544.4067.1 ID=prot_Ecto-sp13_S_contig1544.4067.1|Name=mRNA_Ecto-sp13_S_contig1544.4067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
NRNPAVGVSVTRRCSGTARTASIGTRTRLPAVELPVVAVTVVVAASTAGC
ADRRTPLRHPVEPRFRQYKEGDCGRGKELGQHSQRSPPAARLLFRPPLLR
NRRPRLLF
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mRNA from alignment at Ecto-sp13_S_contig1544:459..783+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1544.4067.1 ID=mRNA_Ecto-sp13_S_contig1544.4067.1|Name=mRNA_Ecto-sp13_S_contig1544.4067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=325bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:459..783+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATCGAAACCCTGCTGTAGGCGTTTCCGTCACGAGACGCTGCTCGGGCAC
CGCCAGGACCGCGTCCATCGGAACCAGAACCAGGTTGCCTGCGGTAGAGC
TCCCTGTCGTTGCTGTCACCGTTGTCGTCGCCGCTTCCACTGCCGGCTGC
GCCGACCGACGCACCCCCCTCCGCCACCCCGTCGAGCCACGCTTCCGCCA
ATACAAGGAGGGGGATTGTGGACGAGGGAAAGAGCTCGGACAGCACTCTC
AACGCTCGCCACCGGCCGCGCGGCTCCTCTTCCGCCCCCCGCTCCTTCGC
AACCGCCGCCCTCGTCTGCTCTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1544:459..783+

>mRNA_Ecto-sp13_S_contig1544.4067.1 ID=mRNA_Ecto-sp13_S_contig1544.4067.1|Name=mRNA_Ecto-sp13_S_contig1544.4067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:459..783+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATCGAAACCCTGCTGTAGGCGTTTCCGTCACGAGACGCTGCTCGGGCAC
CGCCAGGACCGCGTCCATCGGAACCAGAACCAGGTTGCCTGCGGTAGAGC
TCCCTGTCGTTGCTGTCACCGTTGTCGTCGCCGCTTCCACTGCCGGCTGC
GCCGACCGACGCACCCCCCTCCGCCACCCCGTCGAGCCACGCTTCCGCCA
ATACAAGGAGGGGGATTGTGGACGAGGGAAAGAGCTCGGACAGCACTCTC
AACGCTCGCCACCGGCCGCGCGGCTCCTCTTCCGCCCCCCGCTCCTTCGC
AACCGCCGCCCTCGTCTGCTCTTT
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