mRNA_Ecto-sp13_S_contig15435.4065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: D7FVK1_ECTSI (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK1_ECTSI) HSP 1 Score: 399 bits (1024), Expect = 5.620e-133 Identity = 192/196 (97.96%), Postives = 194/196 (98.98%), Query Frame = 1
Query: 1 KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKPLPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCR+RGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVA SQDPAL+PLPVIGNGDILSWRDHEERLEQARELQSQQGEG GSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR
Sbjct: 436 KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRKRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAVSQDPALRPLPVIGNGDILSWRDHEERLEQARELQSQQGEGEGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 631
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: A0A835ZAB5_9STRA (Dus domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB5_9STRA) HSP 1 Score: 241 bits (616), Expect = 6.110e-76 Identity = 116/197 (58.88%), Postives = 145/197 (73.60%), Query Frame = 1
Query: 1 KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGS-VARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKPLPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
+DFVDINMGCPIDLVC +GMG+ALM + RK+RGI+ GM+S L P+TVKMRVGWD+K P A ++ +Q F G V VMIHGRSRLQRY+K ADW+Y+R+ AAS+ L+PLPVIGNGDI+SW+DH++ L++ GG STC M+ RGALIKPWLPTE+KEKRDWDIS++ERLDI +
Sbjct: 87 SVDFVDINMGCPIDLVCKQGMGSALMNKQRKVRGILMGMTSILEVPVTVKMRVGWDDKTPTAHKIIPMIQ---------NFSGKGVCAVMIHGRSRLQRYTKSADWNYIREAAASEQSWLRPLPVIGNGDIMSWQDHKQHLDE-----------GGKNMSTCAMVGRGALIKPWLPTEIKEKRDWDISATERLDILK 263
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: A0A7S2S388_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S388_9STRA) HSP 1 Score: 211 bits (538), Expect = 4.060e-65 Identity = 104/195 (53.33%), Postives = 136/195 (69.74%), Query Frame = 1
Query: 4 MDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKPLPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
+DFVD+N+GCP+D++CDKG GA+LM R +KL+ I+ G+++ L+CP+T+KMR GWDE KP A +V +Q GF G V VMIHGRSRLQRY+KLA+W Y+ VA SQ L +P+IGNGDI S+ D+EE++ +T MLARGALIKPWLPTE+KE+R WDIS+SERLDI +
Sbjct: 34 VDFVDLNLGCPLDIMCDKGAGASLMLRDKKLKDIVEGVTNTLSCPVTIKMRTGWDESKPIAHKLVSKIQ-------SWGFDG-VGAVMIHGRSRLQRYTKLANWKYIEVVANSQSDDLPKIPLIGNGDIFSYTDYEEKI-------------ANDSINTTAMLARGALIKPWLPTEIKERRHWDISASERLDILK 207
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: B7G230_PHATC (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G230_PHATC) HSP 1 Score: 212 bits (540), Expect = 8.080e-63 Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 1
Query: 1 KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKPLPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
+DFVD+N+GCP+D+VC+KG GAALM R ++LR + G+ LTCP+++KMR GW+ KP A +V+ +Q G G ++ VMIHGRSRLQRY+K ADWDY+ VA SQD +L +PVIGNGDI S++D EE++ ARE G S C MLARGALIKPWLPTE+KE+R WDIS+SERLDI +
Sbjct: 268 NVDFVDLNLGCPLDIVCNKGSGAALMMRDKRLRSSVEGILETLTCPISIKMRTGWEMTKPFAHNLVQKIQ-------SWGLDG-ISAVMIHGRSRLQRYAKEADWDYISMVAKSQDMSLTTIPVIGNGDIFSYQDFEEKI--ARE-------GVNS----CAMLARGALIKPWLPTEIKERRHWDISASERLDILK 442
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: A0A7S2PN00_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PN00_9STRA) HSP 1 Score: 209 bits (531), Expect = 1.190e-61 Identity = 106/197 (53.81%), Postives = 139/197 (70.56%), Query Frame = 1
Query: 1 KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQR-EADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKPLPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
++DFVD+N+GCPIDL+CDKG G+ALM R +KL+ + G+S L+CP TVKMR GW+EK P A +V +Q + D +A VM+HGRSRLQRYS+LA+WDY+ +VA Q+ L +P+IGNGDI S+ D+EE++ ARE G Q MLARGALIKPWLPTE+KEKR WDIS+SER+D+ +
Sbjct: 250 EVDFVDLNLGCPIDLICDKGAGSALMLRDKKLKASLMGISDALSCPFTVKMRTGWNEKDPIAHKLVNKIQSWQID---------GLAAVMVHGRSRLQRYSRLANWDYISKVATGQNQDLPQIPLIGNGDIFSYTDYEEKV--ARE---------GIQ--ATAMLARGALIKPWLPTEIKEKRHWDISASERMDVLK 424
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: A0A1Z5JMB7_FISSO (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMB7_FISSO) HSP 1 Score: 208 bits (530), Expect = 1.320e-61 Identity = 104/196 (53.06%), Postives = 135/196 (68.88%), Query Frame = 1
Query: 1 KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKPLPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
K+DFVD+N+GCP+D++ DKG GAALM R K++ I G++ L+CP+T+KMR GWD KP A +V +Q+ G V VMIHGRSRLQRYSK ADWDY+ + A +QD +L + VIGNGDI S++D+EE S++G S+C ML RGALIKPWLPTE+KEKR WDIS++ERLDI +
Sbjct: 302 KVDFVDLNLGCPLDIINDKGAGAALMLRQNKVKDAIKGITQTLSCPVTIKMRTGWDMAKPFAHELVAKIQKWG--------MGGVGAVMIHGRSRLQRYSKEADWDYISRAALNQDESLPKIAVIGNGDIFSYKDYEEST-------SREG------ISSCAMLGRGALIKPWLPTEIKEKRQWDISATERLDILK 476
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: B8BWN9_THAPS (Dus domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWN9_THAPS) HSP 1 Score: 204 bits (520), Expect = 1.510e-61 Identity = 100/196 (51.02%), Postives = 138/196 (70.41%), Query Frame = 1
Query: 1 KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKPLPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
++DFVD+N+GCPIDLVC+KG GA+LM R RKL+G + G++ L CP+T+K+R GW+E +P A +V+T+Q G+ G + VMIHGRSRLQRYS+LA+WDY+ +VA Q L +PVIGNGD+ S+ D+E+ + L+ + S ML RGALIKPWLPTE+KE+R WDIS++ERLD+ +
Sbjct: 96 EVDFVDMNLGCPIDLVCEKGAGASLMLRERKLKGSVEGLTKTLNCPVTIKIRTGWNENEPIAHKLVQTIQAW-------GYDG-IGAVMIHGRSRLQRYSRLANWDYIAEVAKCQAANLHQIPVIGNGDLFSYTDYEQNV-----LKRVNDCDDSNCLSPTAMLGRGALIKPWLPTEIKERRHWDISATERLDMLK 278
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: A0A7S2RFF3_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFF3_9STRA) HSP 1 Score: 209 bits (533), Expect = 2.820e-61 Identity = 107/197 (54.31%), Postives = 135/197 (68.53%), Query Frame = 1
Query: 1 KMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKP-LPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
K+DFVD+NMGCPIDLVC+ G GAALM R K++ I+ G+++ L+CP+T+KMR GW+E+ P A ++RT + G +A M+HGRSRLQRYSKLADW Y+ +VA + A P +P+IGNGDI S + EE GG STCCMLARGALIKPWLPTE+KE+R WDIS+SERLDI R
Sbjct: 322 KVDFVDVNMGCPIDLVCNVGAGAALMQRPNKVKQIVRGLTATLSCPITLKMRTGWNERHPMAHNLMRTAEELGQ--------GRIAAFMLHGRSRLQRYSKLADWSYIGEVAKGFEGAPAPSIPIIGNGDIFSHTEWEEHKAM-----------GGI--STCCMLARGALIKPWLPTEIKERRAWDISASERLDILR 497
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: A0A7S0GCX0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCX0_9STRA) HSP 1 Score: 201 bits (510), Expect = 7.200e-61 Identity = 104/201 (51.74%), Postives = 139/201 (69.15%), Query Frame = 1
Query: 7 DFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQ---DPALKPLPVIGNGDILSWRDHEERLEQARE-LQSQQGEGGG---SQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
DFVD N+GCPIDLVC+KG GA+LM R ++L+ I+ ++ L CP+TVK+R GWD KP A +V +Q G G +A VMIHGRSRLQRYS++ADWDY+R+V+ Q +P L P+P+IGNGDI S+ D++ ++ +E L+ + E + ST M+ARGALIKPWLPTE+KE R WDISSSER D+ +
Sbjct: 1 DFVDCNLGCPIDLVCEKGAGASLMLREKRLKEILTSITGVLRCPVTVKIRTGWDGNKPIAHSLVPKIQGW-------GLEG-IAAVMIHGRSRLQRYSRVADWDYIRRVSKEQSIINPTLPPIPIIGNGDIYSYTDYQTQVMHHQETLEKSENEETPPIINPLSTTAMIARGALIKPWLPTEIKESRHWDISSSERFDMLQ 193
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Match: A0A7S2XP93_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XP93_9STRA) HSP 1 Score: 208 bits (529), Expect = 9.760e-61 Identity = 106/195 (54.36%), Postives = 138/195 (70.77%), Query Frame = 1
Query: 4 MDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVVVRTVQREADRCRQRGFPGSVARVMIHGRSRLQRYSKLADWDYVRQVAASQDPALKPLPVIGNGDILSWRDHEERLEQARELQSQQGEGGGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 588
+DFVD+N+GCP+DLVC+KG GAALM R ++L+ + ++S LTCP T+K+R GWDE KP A ++ VQ+ G G A VMIHGRSRLQRYSKLA+WDY+ QVA SQD L +P+IGNGDI S+ ++EE++ ARE + MLARGAL+KPWLPTE+KE+R WDIS+SERLD+ +
Sbjct: 327 VDFVDLNLGCPLDLVCNKGAGAALMLRDKRLKECLEEITSALTCPFTIKIRTGWDESKPVAHQLIPKVQKW-------GIDGLSA-VMIHGRSRLQRYSKLANWDYIAQVANSQDSELPRIPIIGNGDIFSFSEYEEKV--AREG-----------INATAMLARGALVKPWLPTEIKERRHWDISASERLDLLK 500 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15435.4065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15435.4065.1 >prot_Ecto-sp13_S_contig15435.4065.1 ID=prot_Ecto-sp13_S_contig15435.4065.1|Name=mRNA_Ecto-sp13_S_contig15435.4065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp MDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMback to top mRNA from alignment at Ecto-sp13_S_contig15435:217..3657+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15435.4065.1 ID=mRNA_Ecto-sp13_S_contig15435.4065.1|Name=mRNA_Ecto-sp13_S_contig15435.4065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15435:217..3657+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15435:217..3657+ >mRNA_Ecto-sp13_S_contig15435.4065.1 ID=mRNA_Ecto-sp13_S_contig15435.4065.1|Name=mRNA_Ecto-sp13_S_contig15435.4065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15435:217..3657+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |