mRNA_Ecto-sp13_S_contig15430.4064.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15430.4064.1
Unique NamemRNA_Ecto-sp13_S_contig15430.4064.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15430.4064.1 vs. uniprot
Match: D7FJB7_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.560e-17
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:  124 RVPRRVGIPTIDQVSIRPCNRRSCSQLVTWSVESFAAAGAVCYHM 258
            RVP R+GIPTIDQ SIRPCNRRSCSQLVTWSVESFA AGA CYHM
Sbjct: 1237 RVPWRLGIPTIDQASIRPCNRRSCSQLVTWSVESFATAGAGCYHM 1281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15430.4064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJB7_ECTSI1.560e-1788.89GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15430contigEcto-sp13_S_contig15430:342..600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.9717329-CDS-Ecto-sp13_S_contig15430:341..5991681462819.9717329-CDS-Ecto-sp13_S_contig15430:341..599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15430 342..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15430.4064.1prot_Ecto-sp13_S_contig15430.4064.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15430 342..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15430.4064.1

>prot_Ecto-sp13_S_contig15430.4064.1 ID=prot_Ecto-sp13_S_contig15430.4064.1|Name=mRNA_Ecto-sp13_S_contig15430.4064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
SRHFLCFRRTYEESLENVCSSAPATTPGKALYLLRADPNSRRVPRRVGIP
TIDQVSIRPCNRRSCSQLVTWSVESFAAAGAVCYHM
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mRNA from alignment at Ecto-sp13_S_contig15430:342..600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15430.4064.1 ID=mRNA_Ecto-sp13_S_contig15430.4064.1|Name=mRNA_Ecto-sp13_S_contig15430.4064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=259bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15430:342..600+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCGTCATTTTTTATGTTTCAGACGCACATATGAGGAATCTCTCGAGAA
TGTGTGCTCATCGGCACCGGCCACGACACCGGGTAAGGCGTTGTATCTGC
TGCGTGCCGATCCTAATTCTCGCAGGGTGCCAAGGCGCGTTGGCATTCCT
ACGATCGACCAGGTCTCCATTAGACCTTGCAACAGACGCTCTTGCAGTCA
GCTCGTCACCTGGTCCGTTGAATCGTTTGCGGCAGCGGGAGCTGTCTGCT
ATCACATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15430:342..600+

>mRNA_Ecto-sp13_S_contig15430.4064.1 ID=mRNA_Ecto-sp13_S_contig15430.4064.1|Name=mRNA_Ecto-sp13_S_contig15430.4064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15430:342..600+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCGTCATTTTTTATGTTTCAGACGCACATATGAGGAATCTCTCGAGAA
TGTGTGCTCATCGGCACCGGCCACGACACCGGGTAAGGCGTTGTATCTGC
TGCGTGCCGATCCTAATTCTCGCAGGGTGCCAAGGCGCGTTGGCATTCCT
ACGATCGACCAGGTCTCCATTAGACCTTGCAACAGACGCTCTTGCAGTCA
GCTCGTCACCTGGTCCGTTGAATCGTTTGCGGCAGCGGGAGCTGTCTGCT
ATCACATG
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