mRNA_Ecto-sp13_S_contig15421.4061.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15421.4061.1
Unique NamemRNA_Ecto-sp13_S_contig15421.4061.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15421.4061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15421contigEcto-sp13_S_contig15421:825..1561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons1
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.8530653-UTR-Ecto-sp13_S_contig15421:824..10451681462819.8530653-UTR-Ecto-sp13_S_contig15421:824..1045Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15421 825..1045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.8628013-CDS-Ecto-sp13_S_contig15421:1045..15611681462819.8628013-CDS-Ecto-sp13_S_contig15421:1045..1561Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15421 1046..1561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15421.4061.1prot_Ecto-sp13_S_contig15421.4061.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15421 1046..1561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15421.4061.1

>prot_Ecto-sp13_S_contig15421.4061.1 ID=prot_Ecto-sp13_S_contig15421.4061.1|Name=mRNA_Ecto-sp13_S_contig15421.4061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MVKFPCIIDDRTKRWSHATCGHFVASGIVLGTLCVTEVDASVTIEHVVNE
SGEAPSVLWLRVRCICAARVRVNNSISCSPGVQLSCVVFSMAVAQHLVFA
SGIISRNTRYTRGPWTRLGSLRIHHVSLSSGIRLEFRTRFNDLAPFGRCF
KCKIACTLDLKVAARAVEALMR
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mRNA from alignment at Ecto-sp13_S_contig15421:825..1561+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15421.4061.1 ID=mRNA_Ecto-sp13_S_contig15421.4061.1|Name=mRNA_Ecto-sp13_S_contig15421.4061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=737bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15421:825..1561+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAATGATTGAGCAAGCCAGAGTTTGGGAATGTGTGAGTCGTTGGGAAA
GGTGGGTGGCTCTCGACATGTGCGCGTGGCCTGAAGATCGAGTGTGAGCG
ATTGGAGAGTACTTACCTTTTCCCCGATAAACACCTCGCGGCTTCACGCG
CGTGTTGCCACAAGTCGTGAAAGCTTTGGACATCATTTCCAGTGCCCACG
TGAATTAAGTTGACGTGCTGAATGGTGAAGTTTCCATGCATCATCGACGA
CCGAACGAAGAGGTGGTCGCATGCAACCTGTGGCCACTTTGTCGCCTCCG
GAATTGTGCTGGGCACGTTGTGTGTCACAGAAGTTGATGCCTCAGTGACG
ATTGAACATGTTGTGAATGAGTCGGGCGAGGCGCCCTCAGTCTTGTGGTT
ACGTGTTCGATGCATCTGTGCTGCTCGCGTGCGTGTGAACAACTCGATCA
GTTGCTCCCCAGGTGTTCAGCTCTCTTGTGTTGTGTTTAGCATGGCTGTC
GCTCAGCACCTTGTGTTTGCCAGTGGTATAATCTCGCGTAATACGCGCTA
TACGCGAGGGCCGTGGACCCGCTTGGGGTCTCTACGCATACATCACGTTT
CGTTGTCCTCAGGTATCAGGTTGGAATTTCGTACGCGATTCAACGATTTA
GCTCCCTTTGGCCGTTGCTTCAAGTGTAAAATCGCCTGCACGCTTGATTT
GAAGGTGGCCGCGAGAGCAGTTGAGGCATTGATGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15421:825..1561+

>mRNA_Ecto-sp13_S_contig15421.4061.1 ID=mRNA_Ecto-sp13_S_contig15421.4061.1|Name=mRNA_Ecto-sp13_S_contig15421.4061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15421:825..1561+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAAGTTTCCATGCATCATCGACGACCGAACGAAGAGGTGGTCGCA
TGCAACCTGTGGCCACTTTGTCGCCTCCGGAATTGTGCTGGGCACGTTGT
GTGTCACAGAAGTTGATGCCTCAGTGACGATTGAACATGTTGTGAATGAG
TCGGGCGAGGCGCCCTCAGTCTTGTGGTTACGTGTTCGATGCATCTGTGC
TGCTCGCGTGCGTGTGAACAACTCGATCAGTTGCTCCCCAGGTGTTCAGC
TCTCTTGTGTTGTGTTTAGCATGGCTGTCGCTCAGCACCTTGTGTTTGCC
AGTGGTATAATCTCGCGTAATACGCGCTATACGCGAGGGCCGTGGACCCG
CTTGGGGTCTCTACGCATACATCACGTTTCGTTGTCCTCAGGTATCAGGT
TGGAATTTCGTACGCGATTCAACGATTTAGCTCCCTTTGGCCGTTGCTTC
AAGTGTAAAATCGCCTGCACGCTTGATTTGAAGGTGGCCGCGAGAGCAGT
TGAGGCATTGATGAGA
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