mRNA_Ecto-sp13_S_contig15417.4057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15417.4057.1
Unique NamemRNA_Ecto-sp13_S_contig15417.4057.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: D7FPY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY2_ECTSI)

HSP 1 Score: 544 bits (1402), Expect = 1.790e-191
Identity = 310/384 (80.73%), Postives = 315/384 (82.03%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQLYSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAAGTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKPLDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRRTNSSGSSSANGRGSGVEDQQPGGERGKKQEIGSNAAADAAITEEASEKESGDACCC-SPGREETLEKAGLTGAGGDADDDALGGAEESIAVAGNAPAVTVPGAPPPSGATAGVVEGLSLAAVSLAPPTLSSLETAAVGETRRGPGEKASPTAVGGSSAPPLR 1173
            +DPTSDNLGTTIWDASVILVRYMERNPQLYSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVE AA GTTT SDETRG             PARPKAKVLEYDWGKPLDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRRTNS              DQ PGGERGKKQEIG+N                       SPGRE  L KA +TGAGG ADDDALGGAEESIAVAGNAPAVTVPGAPPPS ATA VVEGLSLAAVSL P  LSSLETAAVG+  RGPG +AS TAVGGSS PPLR
Sbjct:   28 QDPTSDNLGTTIWDASVILVRYMERNPQLYSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEDAA-GTTTASDETRGRGKGGKSVAAAP-PARPKAKVLEYDWGKPLDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRRTNSXXXXXXXXXXXXXXDQHPGGERGKKQEIGANXXXXXXXXXXXXXXXXXXXXXXXSPGREAALGKAAVTGAGGHADDDALGGAEESIAVAGNAPAVTVPGAPPPSEATADVVEGLSLAAVSLVPQPLSSLETAAVGDRSRGPGGEASSTAVGGSSDPPLR 409          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: A0A835YRK7_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK7_9STRA)

HSP 1 Score: 167 bits (422), Expect = 8.210e-46
Identity = 95/222 (42.79%), Postives = 124/222 (55.86%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQLYSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAAGTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKPLDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRR 690
            + P S NLGT++WDASVILV Y+  N + +++R ++GKRVLELGAGCGLAG+Y A  GA VT TDL  V+P+L +N   NLGG                                P   K KV EY WG P+D L  PYDYI+ACDCVYVE LVE LVWS+ + +G  TTV+V              + L    AVR +      ++Y  E++++L CK +R
Sbjct:   26 QQPGSGNLGTSVWDASVILVHYLNDNSKQFNQRTMDGKRVLELGAGCGLAGIYCATLGADVTLTDLEPVLPILNQNARRNLGGM-------------------------------PESVKYKVQEYCWGNPVDALDAPYDYIIACDCVYVESLVEVLVWSLEQLAGASTTVVVCRHVHTSKLVDLSTSTLLTIPAVRASC---AVRSYRSEHADLLFCKRKR 213          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: A8IU01_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IU01_CHLRE)

HSP 1 Score: 145 bits (366), Expect = 2.870e-37
Identity = 84/229 (36.68%), Postives = 126/229 (55.02%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQL--YSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAA---GTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKP--LDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRR 690
            +DP+S++LGTT+WDASV+L ++ E+N +   ++R ++ GKR LELGAG GLAGM FA+ GA+V  TD  +V+PLL+ N   NL   AV  A     GT  +S  T                     +V E DW KP  +  L PPYDYI+A DC+Y E L E    ++ + +   +TV+V +E R      +F +  +   +++  P   MD+ Y H N  + + K ++
Sbjct:   15 QDPSSEHLGTTVWDASVVLAKWFEKNIRKGDFARSKVRGKRALELGAGMGLAGMAFAMVGANVVLTDTADVLPLLRINYETNLSPAAVRLARGHQHGTWADSAGT--------------------VEVQELDWTKPEQVAPLHPPYDYILAADCIYHEGLTEDFHRTVMQVTNEKSTVVVCNELRSHSVQGRFMSLFTATHSIKTVPHAKMDEKYQHPNIFIYIMKKKK 223          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: A0A5J4Y5H2_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y5H2_9CHLO)

HSP 1 Score: 144 bits (363), Expect = 5.200e-37
Identity = 79/235 (33.62%), Postives = 129/235 (54.89%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQL--YSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAAGTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWG--KPLDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRRTNSSGSSSA 717
            +DP +++LGTT+WD+S++L +++E+N +   ++R RL+GKR +ELGAG GL G  FAL G   T TD  EV+ LLQRN   NL   A+         E   T G                    V E DW   +    ++PP+DY++A DCVY E++VE  + ++   +   +TV+V +E R E  +++F +   + F +++ PR  MD  + H   ++L+ + R+   +G  +A
Sbjct:   31 QDPNTNHLGTTVWDSSIVLAKFLEKNAKKGDFARHRLKGKRAIELGAGMGLGGFAFALLGCDTTVTDTAEVISLLQRNYENNLSPAALRGQ------EMSPTAGH-----------------VTVQELDWSNLEHYATVNPPFDYVLAADCVYHEQIVEDFLRTVLAMTHSKSTVVVVNELRSEAVHSRFTSLFEQHFTIKRTPRSKMDAVHQHSAIDILILRRRKAADAGGGAA 242          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: A0A2V0P2U2_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P2U2_9CHLO)

HSP 1 Score: 147 bits (370), Expect = 9.330e-37
Identity = 85/235 (36.17%), Postives = 129/235 (54.89%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQL--YSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAA-GTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKPL------DG----LSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRR 690
            +DP S+NLGTT+WDAS+++ +Y E++ +   +SR ++ GKR ++LG+G GL G+ FAL GA V  TD++ V+PLL+RN   NL   A+ AA+  G   E                    A  +  V E DW +P       +G    +SPP+DYI+A DCVY E L+  L  ++   S   TT+LVA+E+R E   A F    S  F +++ P   M + Y H   ++ + K ++
Sbjct:   27 QDPASENLGTTVWDASIVMAKYFEKHIRKGDFSRAKVRGKRAIDLGSGMGLGGLAFALLGADVVLTDMLPVLPLLRRNYENNLSPAALRAASGDGAHAE--------------------AAGRVAVAELDWSQPSHFTGGGEGGAGVVSPPFDYILAADCVYHEHLLRHLYRALLALSDSRTTILVANERRSESVQAAFSDLFSHSFTMKRIPHSKMAEGYSHPAIQLTILKRKK 241          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: E1ZD88_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZD88_CHLVA)

HSP 1 Score: 144 bits (364), Expect = 3.360e-36
Identity = 83/226 (36.73%), Postives = 117/226 (51.77%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQL--YSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAAGTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKPL--DGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRR 690
            +DP S NLGTT+WDAS++L +Y+E+N +   +SR ++ G++ LELGAG GLAGM  AL GA V FTD+ +V+PLLQRNV  N+   A++   A                             A+V   DW  P       PPYD+I+A DCVY E  V  L+ ++    G  T  +VA+E R +  +  F  R    F +R+     MD  Y H    + + K R+
Sbjct:   26 QDPNSSNLGTTVWDASIVLAKYIEKNSRRGDFSRPKVRGRQALELGAGMGLAGMALALLGADVAFTDIGDVLPLLQRNVDQNISTAALKVKDAAWAAAEVGA--------------------ARVASLDWSDPACYAAFHPPYDFILAADCVYSELAVPHLLAAVLHMGGPRTQTIVANEFRSQTVHDLFMQRFGRHFTIRKVAPNKMDANYQHPLIHIYLLKRRK 231          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: A0A2K3DL47_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DL47_CHLRE)

HSP 1 Score: 145 bits (366), Expect = 3.570e-36
Identity = 84/229 (36.68%), Postives = 126/229 (55.02%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQL--YSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAA---GTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKP--LDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRR 690
            +DP+S++LGTT+WDASV+L ++ E+N +   ++R ++ GKR LELGAG GLAGM FA+ GA+V  TD  +V+PLL+ N   NL   AV  A     GT  +S  T                     +V E DW KP  +  L PPYDYI+A DC+Y E L E    ++ + +   +TV+V +E R      +F +  +   +++  P   MD+ Y H N  + + K ++
Sbjct:   38 QDPSSEHLGTTVWDASVVLAKWFEKNIRKGDFARSKVRGKRALELGAGMGLAGMAFAMVGANVVLTDTADVLPLLRINYETNLSPAAVRLARGHQHGTWADSAGT--------------------VEVQELDWTKPEQVAPLHPPYDYILAADCIYHEGLTEDFHRTVMQVTNEKSTVVVCNELRSHSVQGRFMSLFTATHSIKTVPHAKMDEKYQHPNIFIYIMKKKK 246          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: A0A1Y1HYS1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYS1_KLENI)

HSP 1 Score: 143 bits (361), Expect = 1.010e-35
Identity = 82/223 (36.77%), Postives = 119/223 (53.36%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQL--YSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAAGTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKP--LDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCK 681
            +DP S +LG T+WDAS++L +Y+ERN     +SR++L GKR LELGAGCGLAGM   L G HV  TD  +V+PLLQ+N+  N+    + AA           RG                    V E DWG    +  ++PP+D +VA D +Y E LVE L+ ++A  +G  TT L++ E R    +  F  + S  F+VR+ P   M   + H + ++   +
Sbjct:   26 QDPNSQHLGKTVWDASMVLAKYLERNENKGEFSRKKLAGKRALELGAGCGLAGMGLCLLGCHVVTTDQRDVLPLLQQNIDWNVSSAVLSAA-------DSSLRGPVGDVL--------------VAELDWGNDAHVKAVNPPFDLVVAADVLYAEHLVEPLLRTIAAVTGPRTTTLISYELRSHSVHTAFLEQSSRLFSVRKIPHAKMHPLFQHPSIDIYALR 227          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: A0A835TNA6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835TNA6_9CHLO)

HSP 1 Score: 144 bits (362), Expect = 1.210e-35
Identity = 81/226 (35.84%), Postives = 124/226 (54.87%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQL--YSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAA---GTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKP--LDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCK 681
            +DP+S++LGTT+WDASV+L ++ E+N +   ++R ++ GKR LELGAG GLAGM FA+ GA+V  TD ++V+PLL+ N   NL   AV  A     GT  +   T                     +V E DW KP  +  L PP+DY++A DC+Y E L E    ++ + +   +TV+V +E R      +F +  +   +++  P   MD  Y H+N  + + K
Sbjct:   38 QDPSSEHLGTTVWDASVVLAKWFEKNIRKGDFARAKVRGKRALELGAGMGLAGMAFAMVGANVVLTDTVDVLPLLRINYETNLSPAAVRLARGHQHGTWADGAGT--------------------VEVQELDWTKPEQVAPLHPPFDYVLAADCIYHEGLTEDFHRTVMQVTNEKSTVVVCNELRSHSVQGRFMSLFTATHSIKSVPHAKMDDKYQHQNIFIYIMK 243          
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Match: A0A833VD43_9POAL (Protein N-lysine methyltransferase METTL21A n=2 Tax=Carex littledalei TaxID=544730 RepID=A0A833VD43_9POAL)

HSP 1 Score: 141 bits (355), Expect = 2.380e-35
Identity = 81/225 (36.00%), Postives = 121/225 (53.78%), Query Frame = 1
Query:   25 KDPTSDNLGTTIWDASVILVRYMERNPQL--YSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAAGTTTESDETRGXXXXXXXXXXXXXPARPKAKVLEYDWGKP--LDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLR 687
            +DP S +LG T+WDAS++LV+Y+E+N +   +S  +++GKRV+ELGAGCGLAG+  AL G  VT TD +EV+PLL RNV  N    +   + +G+                             V E DWG    ++ + PP+DYI+  D VY E L+E L+ ++   SG  T VL+  E R    + +    L   F VR  P+  MD  Y H + ++ + +L+
Sbjct:   27 QDPNSKHLGMTVWDASMVLVKYLEKNSRKGRFSPAKMKGKRVIELGAGCGLAGLGMALLGCDVTLTDQLEVLPLLTRNVDRNKSWISQGNSDSGSFGS------------------------ISVAELDWGNKTQIEAVGPPFDYIIGTDVVYAEHLLEPLIETILALSGPSTIVLIGHEIRCTTVHEQMIEMLKNHFIVRTIPKSKMDIKYQHPSIQLYMMELK 227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15417.4057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY2_ECTSI1.790e-19180.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRK7_9STRA8.210e-4642.79Putative methyltransferase-domain-containing prote... [more]
A8IU01_CHLRE2.870e-3736.68Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A5J4Y5H2_9CHLO5.200e-3733.62Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A2V0P2U2_9CHLO9.330e-3736.17Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
E1ZD88_CHLVA3.360e-3636.73Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A2K3DL47_CHLRE3.570e-3636.68Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A1Y1HYS1_KLENI1.010e-3536.77Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A835TNA6_9CHLO1.210e-3535.84Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A833VD43_9POAL2.380e-3536.00Protein N-lysine methyltransferase METTL21A n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15417contigEcto-sp13_S_contig15417:402..3138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score555.4
Seed ortholog evalue2.1e-155
Seed eggNOG ortholog2880.D7FPY2
Preferred nameVCPKMT
Model size1176
KEGG koko:K21806
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0019899,GO:0032259,GO:0032780,GO:0032991,GO:0036211,GO:0043086,GO:0043170,GO:0043412,GO:0043414,GO:0043462,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051117,GO:0051336,GO:0051346,GO:0065007,GO:0065009,GO:0071704,GO:0140096,GO:1901564
Exons4
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-01_008220.1
Cds size1176
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.409876-CDS-Ecto-sp13_S_contig15417:401..9931681462819.409876-CDS-Ecto-sp13_S_contig15417:401..993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15417 402..993 -
1681462819.420143-CDS-Ecto-sp13_S_contig15417:1352..15461681462819.420143-CDS-Ecto-sp13_S_contig15417:1352..1546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15417 1353..1546 -
1681462819.431137-CDS-Ecto-sp13_S_contig15417:1941..21091681462819.431137-CDS-Ecto-sp13_S_contig15417:1941..2109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15417 1942..2109 -
1681462819.439817-CDS-Ecto-sp13_S_contig15417:2916..31381681462819.439817-CDS-Ecto-sp13_S_contig15417:2916..3138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15417 2917..3138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15417.4057.1prot_Ecto-sp13_S_contig15417.4057.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15417 402..3138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15417.4057.1

>prot_Ecto-sp13_S_contig15417.4057.1 ID=prot_Ecto-sp13_S_contig15417.4057.1|Name=mRNA_Ecto-sp13_S_contig15417.4057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=392bp
FAQKHTKKKDPTSDNLGTTIWDASVILVRYMERNPQLYSRRRLEGKRVLE
LGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEAAAAG
TTTESDETRGRRGKSVAAAAAAAPARPKAKVLEYDWGKPLDGLSPPYDYI
VACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSE
DFAVRQAPRRHMDKAYDHENSEVLVCKLRRTNSSGSSSANGRGSGVEDQQ
PGGERGKKQEIGSNAAADAAITEEASEKESGDACCCSPGREETLEKAGLT
GAGGDADDDALGGAEESIAVAGNAPAVTVPGAPPPSGATAGVVEGLSLAA
VSLAPPTLSSLETAAVGETRRGPGEKASPTAVGGSSAPPLR*
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mRNA from alignment at Ecto-sp13_S_contig15417:402..3138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15417.4057.1 ID=mRNA_Ecto-sp13_S_contig15417.4057.1|Name=mRNA_Ecto-sp13_S_contig15417.4057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2737bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15417:402..3138- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGCTCAAAAACACACAAAAAAAAAGGACCCCACTTCTGACAACCTCGG CACCACGATCTGGGACGCCAGCGTGATTCTAGTCCGCTACATGGAGCGCA ACCCACAGCTGTACTCCCGGCGAAGGCTGGAAGGCAAGAGGGTCCTGGAA CTGGGCGCGGGGTGCGGCTTGGCGGGGATGTACTTCGCCCTGCAGGGTGC GCACGTGACTTTCACGGACTTGGTGAGACACATTACAGCAGTACTGCAGT ATTACGGGAATTGTGTGTGTACTGTATCCCAGCACGTGGCATACGCTTAC GTTCCAACCGAGACATACAGTACCACAAGTAGTACGTCACTAACTGAGCA ATGGTACTGGGCATCAGCGGAGAGAAGAGATGCGTAGACTTTCCATGATA CACTGCAGTACCTGGCATTGCACTCGATTTCCTACTGTCGTGATGTCATG ACGCGCCCTTGACCAGACCTGGGGCTCGGCCAAACGTTACATGATCCTTT CGTTGCCGCACGTTTCTTTCTTGTTTTTTACAAGCGTGTGGGCCACTTTT TTTGTAGAGCACGGGCACAAACGTGTAGCAAGTGGCGACACCAAATTCAT TTTCATCGCGTTTTGCGAAACAACGTTGGTTGATGCAAGCAACGACAACT ACGACCCACGATATTTCAGGCAAAAGCATCACCCCAACACTACAATACAG CGGGTTGGGTTCTAGGTTAAGGTGAAGGCCGGGGAGCGAACGAAAGCCTT TTGTTTCACCGTCCTGGTCCAGCGAAGCGTGTAGCCGCCGCCCTGATTCG GATGCTCCAACATATTATATGCTCTCTCCATCTCAAACAGGCAGGCCTCC GCAAGGCTTTTTTTGTTGAAGAAAGAAAGCACTCCGTGTTTGTTTACATT CGCGAACCATAAGAGTTGACGCGAGTGAGTCTGGTTGTTGCTGTTGCACT TAACTTTTTCTTGCTCTTTCTGCCGCGCGGTTTTGTTTATGATACGGACT GGACGGGCACTCGACTACCCGCCGTGTAGATTGAGGTGGTCCCTCTCCTC CAGCGAAATGTCACCATGAACCTTGGCGGGCAAGCGGTGGAAGCTGCTGC TGCCGGCACGACTACCGAATCGGACGAAACACGCGGCAGACGGGGAAAAT CCGTCGCCGCCGCCGCCGCCGCCGCCCCCGCACGCCCGAAAGCAAAAGTG AGAGGAAGGAGATGGGCTTCGACGGCGTGATTTTGGGAGAGGCGGTCGGG AACCTCATGTTGCCGCTGGACGTTGATTCAAGCTTTTTTTTCAAGGTCGT GGCCGCTTTGTTGTGGCAGGGCTTGTGGTATGGGGTCAGGCCGAAGAATT GTCCCGCCACTGGATGCCGAGGGAAGATACCGATGTACGTACGTACGTAC GTCTCAGGTGCTATGTACATCGTGTATTGACAGCAGTTTCCGTAGCGTCC TCGCCGCCATCCTCTTTCCCCCGATTGAAGTTGCTTGTGGCTGCGGAAGA CCACGTGGTGCTCCCTCCCTCCCAAACGCACTAACTAGCGTCTCGCAACG CGCGAAAATGAAACTAAACCACACAAACAAAACAATAAAAAGGTGCTCGA GTATGACTGGGGAAAGCCGCTGGACGGGCTCTCCCCGCCGTACGACTACA TCGTCGCCTGCGACTGCGTGTACGTCGAACGCTTGGTGGAGTCCCTCGTC TGGTCGATGGCGCGGTGCTCGGGCCGCGGGACGACCGTGCTCGTGGCGAG CGAGAAGCGCGAGGAAGTCACGTACGCCAAGTTTAGGTAGGCTTTGATTT GGCGAAGAAGTGACGTACGCCAAGTGTAGGCAGGTTTTACCGGAAGAAAT GCCTCCGGTGGAAATGCCTCCGGCGGTTTCTCACTAGAAACCCAAGCGCG CAAGGTAAAGTTACTTGCACAAAAGTGTAGGCGGGTTTTTTCGGAACTAA GGCCCCCGGCGGTTTTCCCGCTAGAAAACCAGACAGACGGCATGTTAAGA CCGGAACTCCTTGAAGCTAGGAAACCTCGGATACACTCCATCTCAACAGT CCGGTTCCTCTACATCGAGTGGCAGTGTTTGATGCCGGGCAGGTCTAATC TAGCGGGAAGGATTCACTCAAATTGTTTCTTCTTTTTTATTCTAGGGCGC GGCTGAGCGAGGACTTCGCCGTGAGGCAAGCGCCCAGGAGGCACATGGAC AAGGCCTACGACCACGAGAACTCGGAGGTGCTCGTGTGCAAGCTGCGTCG GACCAACAGCAGCGGTAGCAGTAGCGCTAACGGCAGGGGTAGCGGCGTCG AGGACCAGCAGCCCGGTGGAGAGCGAGGGAAGAAGCAAGAAATCGGCTCA AATGCTGCTGCTGATGCTGCTATCACAGAGGAGGCCAGTGAAAAGGAGAG TGGCGACGCATGTTGTTGCTCGCCAGGGAGAGAAGAGACCCTTGAGAAGG CGGGATTAACGGGAGCAGGGGGTGACGCAGATGATGATGCCCTTGGTGGT GCGGAGGAATCGATCGCGGTTGCCGGAAACGCACCTGCCGTAACGGTACC AGGAGCACCACCACCATCAGGGGCAACAGCCGGCGTCGTAGAGGGGTTAT CCCTTGCTGCCGTGTCTCTGGCGCCGCCGACGTTGTCATCTCTCGAGACA GCTGCTGTCGGAGAGACAAGGAGGGGTCCGGGGGAGAAAGCTTCGCCGAC GGCCGTCGGCGGCAGCAGCGCACCACCGCTGAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15417:402..3138-

>mRNA_Ecto-sp13_S_contig15417.4057.1 ID=mRNA_Ecto-sp13_S_contig15417.4057.1|Name=mRNA_Ecto-sp13_S_contig15417.4057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1176bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15417:402..3138- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGCTCAAAAACACACAAAAAAAAAGGACCCCACTTCTGACAACCTCGG
CACCACGATCTGGGACGCCAGCGTGATTCTAGTCCGCTACATGGAGCGCA
ACCCACAGCTGTACTCCCGGCGAAGGCTGGAAGGCAAGAGGGTCCTGGAA
CTGGGCGCGGGGTGCGGCTTGGCGGGGATGTACTTCGCCCTGCAGGGTGC
GCACGTGACTTTCACGGACTTGATTGAGGTGGTCCCTCTCCTCCAGCGAA
ATGTCACCATGAACCTTGGCGGGCAAGCGGTGGAAGCTGCTGCTGCCGGC
ACGACTACCGAATCGGACGAAACACGCGGCAGACGGGGAAAATCCGTCGC
CGCCGCCGCCGCCGCCGCCCCCGCACGCCCGAAAGCAAAAGTGCTCGAGT
ATGACTGGGGAAAGCCGCTGGACGGGCTCTCCCCGCCGTACGACTACATC
GTCGCCTGCGACTGCGTGTACGTCGAACGCTTGGTGGAGTCCCTCGTCTG
GTCGATGGCGCGGTGCTCGGGCCGCGGGACGACCGTGCTCGTGGCGAGCG
AGAAGCGCGAGGAAGTCACGTACGCCAAGTTTAGGGCGCGGCTGAGCGAG
GACTTCGCCGTGAGGCAAGCGCCCAGGAGGCACATGGACAAGGCCTACGA
CCACGAGAACTCGGAGGTGCTCGTGTGCAAGCTGCGTCGGACCAACAGCA
GCGGTAGCAGTAGCGCTAACGGCAGGGGTAGCGGCGTCGAGGACCAGCAG
CCCGGTGGAGAGCGAGGGAAGAAGCAAGAAATCGGCTCAAATGCTGCTGC
TGATGCTGCTATCACAGAGGAGGCCAGTGAAAAGGAGAGTGGCGACGCAT
GTTGTTGCTCGCCAGGGAGAGAAGAGACCCTTGAGAAGGCGGGATTAACG
GGAGCAGGGGGTGACGCAGATGATGATGCCCTTGGTGGTGCGGAGGAATC
GATCGCGGTTGCCGGAAACGCACCTGCCGTAACGGTACCAGGAGCACCAC
CACCATCAGGGGCAACAGCCGGCGTCGTAGAGGGGTTATCCCTTGCTGCC
GTGTCTCTGGCGCCGCCGACGTTGTCATCTCTCGAGACAGCTGCTGTCGG
AGAGACAAGGAGGGGTCCGGGGGAGAAAGCTTCGCCGACGGCCGTCGGCG
GCAGCAGCGCACCACCGCTGAGGTAG
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