mRNA_Ecto-sp13_S_contig1541.4053.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1541.4053.1
Unique NamemRNA_Ecto-sp13_S_contig1541.4053.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: A0A6H5KTL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL0_9PHAE)

HSP 1 Score: 608 bits (1567), Expect = 2.740e-213
Identity = 335/359 (93.31%), Postives = 341/359 (94.99%), Query Frame = 2 
Query:    2 AAAGLLEERPGRSVRPCGSWTAAAAASAKRQPRAIPHVGPLPTTAHMKFPLDRSMSSLKSSQWEREGLPVAPVHSGSEPLPSNLKLAAEAWPAATAGEGGDAE--------EXXXXXXXXXXXXTDPLSEEDHDAIAALLDIPGLAATDDLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFLHT 1054
            AAAGLLE R  RSVRPCGSWTAAA ASAKRQPRAIPHVGPLPTTA+MKFPLDRSMSSLKSSQWEREGLPVAPVHSGSEPLPSNLKLAAEAWPAATAGEGG+AE         XXXXXXXXXXXXTDPLSEEDHDAIAALLD PGLAA+DDLEVEVVAW+DGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTS MIKTIKARGIDGPVTF+VGGDPQVEFMRS+SNIVGVKVL ARGANVHDIIKRPNLVLTQDAV HLEEFL T
Sbjct:   26 AAAGLLEGRTDRSVRPCGSWTAAAGASAKRQPRAIPHVGPLPTTAYMKFPLDRSMSSLKSSQWEREGLPVAPVHSGSEPLPSNLKLAAEAWPAATAGEGGNAEGXXXXXXXXXXXXXXXXXXXXTDPLSEEDHDAIAALLDTPGLAASDDLEVEVVAWSDGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSAMIKTIKARGIDGPVTFMVGGDPQVEFMRSVSNIVGVKVLSARGANVHDIIKRPNLVLTQDAVTHLEEFLQT 384
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BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: D8LD33_ECTSI (50S ribosomal protein L4P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD33_ECTSI)

HSP 1 Score: 533 bits (1373), Expect = 4.240e-185
Identity = 292/307 (95.11%), Postives = 295/307 (96.09%), Query Frame = 2 
Query:  140 MKFPLDRSMSSLKSSQWEREGLPVAPVHSGSEPLPSNLKLAAEAWPAATAGEGGDAEEXXXXXXXXXXXXTD-PLSEEDHDAIAALLDIPGLAATDDLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFLHTP 1057
            MKFPL RSMSSLKSSQWEREGLPVAPV SGSEPLPSNLKLA EAWPAATAGEGGDAEE  XXXXXXXXXX   PLSEEDHDAIAALLDIPGLAATDDLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGF+TS MIKTIKARGIDGPVTFVVGGDPQVEFMRS+SNI+G KVLPARGANVHDIIKRPNLVLTQDAV HLEEFL TP
Sbjct:    1 MKFPLVRSMSSLKSSQWEREGLPVAPVQSGSEPLPSNLKLAVEAWPAATAGEGGDAEEDAXXXXXXXXXXXXXPLSEEDHDAIAALLDIPGLAATDDLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFKTSAMIKTIKARGIDGPVTFVVGGDPQVEFMRSVSNIMGAKVLPARGANVHDIIKRPNLVLTQDAVTHLEEFLQTP 307
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BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: A0A835ZAZ5_9STRA (Ribosomal protein L4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 5.620e-46
Identity = 103/207 (49.76%), Postives = 138/207 (66.67%), Query Frame = 2 
Query:  434 VEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPR-RRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFR-TSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFL 1048
            V V+    G  V TV+L P +FG  +RRDVVH VVRWQLA RR+G  +TK I E+SGSG+K+RPQKG G AR GH RPPHWRGGAKAHGP+  RD+S+KL+KK  ++GLRVALSA+LRE +L VVD L +DG   T    + ++A G+      V G  P+     +  ++ GVK+L    AN +DI++   LV+++  ++ L E L
Sbjct:  134 VPVIDLVTGEEVDTVALDPFIFGHEIRRDVVHAVVRWQLACRRQGAAKTKLISEVSGSGKKMRPQKGSGQARCGHKRPPHWRGGAKAHGPKGNRDWSYKLHKKVRKMGLRVALSAKLRERKLVVVDALTTDGAAATGPTAERLRALGLLRSALLVDGAAPEDALAHATRHLPGVKLLWGGAANCYDILRSDRLVVSRAGLQFLTEKL 340
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BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: A0A7S2DV07_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DV07_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.690e-45
Identity = 103/198 (52.02%), Postives = 134/198 (67.68%), Query Frame = 2 
Query:  467 VATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRD-FSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFV---VGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFL 1048
            V  +SL   VFG P+R D++H+VVRWQLA+RR+G   TK I E+SGSG+K+RPQKG G ARAGHSRPPHWR GA AHGPR    ++FKLNKK  RLGL  ALS +L EG+L VVD L ++  +T  + + +  +G    + FV   + GD    F ++ SN+  V  LP+ G NV+DI+K  ++VLT DAV  LEE L
Sbjct:  137 VTELSLDSRVFGRPLRIDILHQVVRWQLAKRRRGTAHTKNISEVSGSGKKMRPQKGTGQARAGHSRPPHWRHGAVAHGPRGETIWTFKLNKKVRRLGLLTALSQKLSEGRLHVVDSLATESLKTRALEQRLVHQGWTDKILFVDDLLTGDSF--FRKASSNLPYVHTLPSIGLNVYDILKATDVVLTVDAVAALEERL 332
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BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: A0A5D6Y5M1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5M1_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.310e-43
Identity = 101/213 (47.42%), Postives = 131/213 (61.50%), Query Frame = 2 
Query:  416 ATDDLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFLHT 1054
            A  D+++ V++      +  V+L  SVFG P R D++  VVRWQLA RR G  +TK   E+SGS RK   QKG G AR G  R P WRGG + HGP+ RDFS+ L KK   +GLRVALS +LREG+L VVD L  D  +T  M K ++ RG D  + F+   D    F+ S  NI  V  LP    NV+ I+++  LV+T+DAVK+LEE LHT
Sbjct:   73 ANGDVQMNVLSLKSDDQLEPVTLDGSVFGAPARVDILQRVVRWQLACRRAGTNKTKTRSEVSGSTRKPWKQKGSGRARVGDIRAPQWRGGYRVHGPKLRDFSYSLPKKVRAMGLRVALSTKLREGKLAVVDSLDVDSGKTKDMKKFLETRGWDHAL-FIDSEDVATNFLLSTRNIPYVDTLPQHKINVYSILQKDLLVITKDAVKYLEERLHT 284
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BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: A0A6G0XNJ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNJ9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 5.800e-43
Identity = 93/208 (44.71%), Postives = 137/208 (65.87%), Query Frame = 2 
Query:  425 DLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFL 1048
            +++ +++ +ADGA V +++L+ SVFG PVR+D++H VV+WQLA RR GN +TK   E+SGS +KV  QKG G AR G+ RPP WRGG +AHGP  RD S+ L KK   +GLRVALS +L EG+L +V DL  +  +T  M   ++ +G D  + F+ G +    F+ S  N+  V V+  +  NV+ I+ +  LV+++  VK+LEE L
Sbjct:   62 NIQAKILTFADGAAVGSLTLSRSVFGTPVRKDLLHRVVKWQLANRRSGNHKTKTRSEVSGSTKKVWKQKGSGRARVGNRRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEGKLAIVKDLHVEEDKTKPMKSLLETKGWDHAL-FIDGDETSRNFVLSTRNLPNVDVIRQKNINVYAILHKDVLVVSEKTVKYLEERL 268
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BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: RL4_RHORT (50S ribosomal protein L4 n=1 Tax=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) TaxID=269796 RepID=RL4_RHORT)

HSP 1 Score: 162 bits (410), Expect = 8.790e-43
Identity = 94/198 (47.47%), Postives = 130/198 (65.66%), Query Frame = 2 
Query:  455 DGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFL 1048
            DG    ++ L+ SVFG+PVR D++H +VRWQLARR+ G  +TK I EISG+  K   QKG G AR G  R P +RGGA   GP  R  +  LNKK  +LGL+ ALSA+ + GQL V+D   S+  +T  ++  +K  G++  V F+ G +   +F  +  NI+G+ VLP +GANV+DI++R  LVLT++AVKHLEE L
Sbjct:    9 DGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPFKQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQLIVLDQAISESGKTKDLLAQLKVLGLE-KVLFIDGPEVNEKFALAARNIIGLDVLPQQGANVYDILRRDTLVLTKEAVKHLEERL 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: H6SSH0_PARPM (50S ribosomal protein L4 n=2 Tax=Pararhodospirillum TaxID=1612157 RepID=H6SSH0_PARPM)

HSP 1 Score: 162 bits (410), Expect = 8.790e-43
Identity = 93/198 (46.97%), Postives = 132/198 (66.67%), Query Frame = 2 
Query:  455 DGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFL 1048
            DGA   +V L+ +VFG+PVR D++H +VRWQLA+R+ G  +TK I EISG+  K   QKG G AR G  R P +RGGA   GP  R  +  L KK  +LGL+ ALSA++  G++ ++D  KS+  +T  ++  +KA G++  + F+ G +   +F  +  NIVG+ VLP++GANV+DI++R  LVLT DAVKHLEE L
Sbjct:    9 DGANAGSVELSEAVFGLPVRADLLHRLVRWQLAKRQAGTHKTKGISEISGTTAKPFKQKGTGNARQGSKRSPQFRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKVAAGEILILDQAKSENGKTKDLLAQVKALGLNKAL-FIDGPEVDEKFALAARNIVGIDVLPSQGANVYDILRRDTLVLTLDAVKHLEERL 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: A0A1V9ZG37_9STRA (50S ribosomal protein L4 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZG37_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.240e-42
Identity = 93/211 (44.08%), Postives = 137/211 (64.93%), Query Frame = 2 
Query:  416 ATDDLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFL 1048
            A  +++ +++++ DGA + T+SL  SVFG P+R+D++  VV+WQLA RR GN +TK   E+SGS RK   QKG G AR G+ RPP WRGG +AHGP  RD S+ L KK   +GLRVALSA+L EG+L +V DL  +  +T    + ++++G D  + FV G +    F+ +  N+  V V+  +  NV+ I+ +  LVL++  VK+LEE L
Sbjct:   51 AAGNVQAKLLSFKDGAQIGTLSLNRSVFGAPIRKDILQRVVKWQLANRRSGNHKTKTRSEVSGSTRKAWAQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSAKLAEGKLAIVQDLSIESEKTKAAKQLLESKGWDDAL-FVDGAEAPKNFVLATRNLARVDVIREQQVNVYSILHKDVLVLSEKTVKYLEERL 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Match: A0A8J6YKK4_9PROT (50S ribosomal protein L4 n=1 Tax=Phaeovibrio sulfidiphilus TaxID=1220600 RepID=A0A8J6YKK4_9PROT)

HSP 1 Score: 160 bits (405), Expect = 4.520e-42
Identity = 92/198 (46.46%), Postives = 130/198 (65.66%), Query Frame = 2 
Query:  455 DGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTFVVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLEEFL 1048
            DG  V  + L  SVFG+PVR D++  +VRWQLARR+ G  +TK I EISG+  K   QKG G AR G  R P +RGGA   GP  R  +  L KKF +LGL+ ALSA+L  G++ V++DL S+  +T  ++  +KA G++  + F+ G +  ++F  +  NI  + VLP +GANV+DI++R  LVLT++A+KHLEE L
Sbjct:    9 DGKSVGEIDLPESVFGLPVRADILQRMVRWQLARRQAGTHKTKGISEISGTTAKPFKQKGTGHARQGSKRSPQYRGGATIFGPVVRSHAHDLTKKFRKLGLKTALSAKLAAGKVVVLEDLVSESGKTRDLLAQVKALGLEKAL-FIGGNEVDIKFALASRNIPTIDVLPQQGANVYDILRRDTLVLTKEAIKHLEERL 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1541.4053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTL0_9PHAE2.740e-21393.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD33_ECTSI4.240e-18595.1150S ribosomal protein L4P n=1 Tax=Ectocarpus silic... [more]
A0A835ZAZ5_9STRA5.620e-4649.76Ribosomal protein L4 domain-containing protein n=1... [more]
A0A7S2DV07_9STRA1.690e-4552.02Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A5D6Y5M1_9STRA2.310e-4347.42Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0XNJ9_9STRA5.800e-4344.71Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
RL4_RHORT8.790e-4347.4750S ribosomal protein L4 n=1 Tax=Rhodospirillum ru... [more]
H6SSH0_PARPM8.790e-4346.9750S ribosomal protein L4 n=2 Tax=Pararhodospirillu... [more]
A0A1V9ZG37_9STRA1.240e-4244.0850S ribosomal protein L4 n=3 Tax=Saprolegniaceae T... [more]
A0A8J6YKK4_9PROT4.520e-4246.4650S ribosomal protein L4 n=1 Tax=Phaeovibrio sulfi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1541contigEcto-sp13_S_contig1541:9757..16716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score540.4
Seed ortholog evalue5.4e-151
Seed eggNOG ortholog2880.D8LD33
Preferred nameyml6
Model size1854
KEGG koko:K02926
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022626,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons6
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0088@1,KOG1624@2759
Ec32 ortholog description50S ribosomal protein L4
Ec32 orthologEc-11_000280.1
Cds size921
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1541.4053.1prot_Ecto-sp13_S_contig1541.4053.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1541 10551..16577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.0916634-UTR-Ecto-sp13_S_contig1541:9756..105501681462819.0916634-UTR-Ecto-sp13_S_contig1541:9756..10550Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1541 9757..10550 -
1681462819.1765032-UTR-Ecto-sp13_S_contig1541:16577..167161681462819.1765032-UTR-Ecto-sp13_S_contig1541:16577..16716Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1541 16578..16716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.104858-CDS-Ecto-sp13_S_contig1541:10550..106431681462819.104858-CDS-Ecto-sp13_S_contig1541:10550..10643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1541 10551..10643 -
1681462819.1143482-CDS-Ecto-sp13_S_contig1541:11136..112441681462819.1143482-CDS-Ecto-sp13_S_contig1541:11136..11244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1541 11137..11244 -
1681462819.1246014-CDS-Ecto-sp13_S_contig1541:12742..128411681462819.1246014-CDS-Ecto-sp13_S_contig1541:12742..12841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1541 12743..12841 -
1681462819.141181-CDS-Ecto-sp13_S_contig1541:13945..141281681462819.141181-CDS-Ecto-sp13_S_contig1541:13945..14128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1541 13946..14128 -
1681462819.1547346-CDS-Ecto-sp13_S_contig1541:14720..149861681462819.1547346-CDS-Ecto-sp13_S_contig1541:14720..14986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1541 14721..14986 -
1681462819.1648166-CDS-Ecto-sp13_S_contig1541:16405..165771681462819.1648166-CDS-Ecto-sp13_S_contig1541:16405..16577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1541 16406..16577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1541.4053.1

>prot_Ecto-sp13_S_contig1541.4053.1 ID=prot_Ecto-sp13_S_contig1541.4053.1|Name=mRNA_Ecto-sp13_S_contig1541.4053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=307bp
MKFPLDRSMSSLKSSQWEREGLPVAPVHSGSEPLPSNLKLAAEAWPAATA
GEGGDAEEDAEAEDEEEEEETDPLSEEDHDAIAALLDIPGLAATDDLEVE
VVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRI
GEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKK
FVRLGLRVALSARLREGQLKVVDDLKSDGFRTSTMIKTIKARGIDGPVTF
VVGGDPQVEFMRSISNIVGVKVLPARGANVHDIIKRPNLVLTQDAVKHLE
EFLHTP*
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mRNA from alignment at Ecto-sp13_S_contig1541:9757..16716-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1541.4053.1 ID=mRNA_Ecto-sp13_S_contig1541.4053.1|Name=mRNA_Ecto-sp13_S_contig1541.4053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1541:9757..16716- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGCTGCCGGCCTCCTCGAAGAACGCCCGGGCCGATCAGTCAGACCAT
GCGGATCATGGACGGCAGCAGCAGCAGCGAGTGCTAAGCGACAGCCACGG
GCGATACCCCACGTTGGTCCCTTGCCGACGACAGCACACATGAAGTTCCC
GCTGGATCGATCCATGTCGTCTCTGAAATCTTCTCAGTGGGAGCGGGAAG
GTTTGCCTGTAGCACCGGTGCACAGCGGCAGCGAGCCGCTGCCGTCGAAC
CTCAAGCTTGCGGCGGAGGCTTGGCCTGCTGCAACGGCGGGAGAGGGAGG
AGACGCGGAAGGTGAATCTGGTACACGTAGCAGTAGGCAATGAATACCGT
AGGTGCTTCGCTGCATACCGGGGTACCTTCGTAGTTGTGATTCCTGCCTT
TGTTATGCCCGTGGTGTTGTGTGAGTGTGTCCCGCCTGTCCAATGTCGAA
AGCAAGTTTCGATTTGTACATGTCGCACCCCTGCACTCGCAGGGTGCCGT
AGGTTGCATAAGATATCATACCCCCTGTACCGACTTTCAAAGCTCATCCA
CTCCACGACGGAGAAGATATCGAAACAAAAGTATACGTTTAAGGAGGGCT
CTCGACGAGACGGTTTCAACGCCGCCATTTTCTTCACCCTCACTGCTTTT
GCTGCCGAGGTAGATATCAAGTTTCGAAAATCGATCCAGGGGGTGTGATA
TCTTACGCAACCTACAGGTATGTGATCCGCATGCCAACCGCCGTTGTGCC
GGCAGAGGCGTTATACGGATGGTTGCATACCTCTGCCTTCTCCCACCTAC
AGTAGTGTGTGAATTACCGAAGTAAACTGCTCAAGAGCTCCAGTGGTTAC
TCATAGAGAAAGTTACCAGGTCGACACTAGACTAACTACCGCTGCATTAC
ACAAATAAGCCGTAGGTTGCGTAAGATACCACACCCCCTGGACCGAGTTT
CAAAGCTCGATTACTCTACACAACGAAGAGGATGCCACAATTAAGTACAT
TTTCGGAAACGTTATCAAGGAGATGATTCCAAAGCTTCCCACCATTTTTC
GGCACCGTAGCTTTTTGGTTGCAGAGTACCCGAGCTTTGATAATTGATTA
GGGCGTACGATATCGTACGGTACATTGGCCGCAGCTGCTGTCCATCCAGC
GAAGCATCCCCACACTCTCGGTTACCCGTAAATCGCGTCACAGTTGCCCG
TAAATAGCGAAACCTTGCGATCTTGCTTTCTTAGAGACCTCCTCCTGCAT
ATCTGTGTGTTTATCCCGCCCCAATGCCCTACAATACAACTTTACTATTT
TCGTGAGACGTTTGTGTAGAAGGTATTTTTGTATGCAAGCGGCGAAGCAC
CCTAGCTGTTGTTGCGGGGGGGTCAGCGTTGCGATCAACCTGTCAAACGT
CTGCGCAAATTAGCCAGCGATAGCTTTCGCAAAACCCTCGCGACGCCGGA
CTTTGGCGATAAATATTCTACGTTTAGGCGTTTGTTGCAATCGCAAGTAA
AAGCTCGCCACCAACATGAGACAACGGCACATCAAGCGTGAAGGCGGACG
CTTTCTTAAGAAAGTTGTTGTGACGATCCATGCGGTGGTATAATTAGGCA
TAGAGCACTCATCGTCAGATCTTGAAACGGCAGGGCCTGGTACATTAGTA
AGTCACATGCCGATATGCTCTTCGTCTTGCCATAGTTCGTTCGCTTGTTC
CCTCCATATCTCGAACACTTCCCCACGCAGAGGACGCAGAAGCGGAAGAC
GAGGAGGAAGAAGAGGAAACCGACCCCCTGTCGGAAGAGGACCACGATGC
CATCGCAGCCCTCCTCGACATACCCGGCCTGGCTGCCACCGACGATCTTG
AGGTGGAGGTGGTGGCCTGGGCTGACGGCGCTCCTGTGGCGACGGTATCG
CTGGCGCCTTCCGTGTTTGGCGTGCCCGTGCGAAGGGACGTCGTGCACGA
AGTCGTTCGGTGGCAGCTTGCGCGCCGTAGGAAAGGCAACGGCCAGGTTT
GTCGTGTGTTCTTCATTGGTGTTAAGGGCTCGGTCGTAGTTGTTGAGCCT
TGGCTGTGGTTTTGGCTTGGGAGTATCTGGTAAAGGTTCACGTGGCATGA
GGACAGTGACGAGAAGTTATTCCGCTGTGCACGCGTCTTGATGTCGTTCT
ACGGAAGATTGCTCTCTCGCCCGTATCGTTTGCGGCTGCTGCGCTGTGCA
CAGCACTTTCGCTGGTGCATGCGACTAGCATTGTGCTGCATCGGTCGCTG
TTGAGGTCTCTCTTTTGTCGGAACTCATCTATATCTACAACGATCGTGTC
TTGGTAAACATATGTCTGGTCCCTTCGGCGCCACACTTTGTCAGAATAAT
ACGTTCGTGACGGACAGATGAACCTTCGTTGGGTACTGTGCTATAGGGTG
CGCGATCGCCTCCTACATACCCGTGGAGCATGAATCACCTCGCTTTCCTC
GATGGCCTGTTTTGTCTTTCATGGCACCGATGTCACCCCCACCCCAAACC
AACATGCTGCTTTCTCGCCGTCCCTGATGCCCTATCTCTTCCGCCGCCGA
TAATCTCCGGCAATCTCCGTCGACTACCCAATCATCAGACCAAGAGGATA
GGGGAGATCAGCGGGTCCGGGAGAAAGGTTAGGCCTCAGAAGGGGGGAGG
CGTCGCCCGCGCGGGTCACAGCCGTCCACCCCACTGGCGGGGAGGCGCCA
AGGCTCACGGTCCGAGGAGGCGGGACTTTTCCTTCAAGCTCAACAAGAAG
TTCGTCAGGCTTGGCTTGAGGGTAAGCGAGGGAGGGAGGTGGTTTTTGTT
TGGCGTCTTGTGGTTGTAGCATGATACATCCTTCAAGCTTAACAAGGAGC
TCATCAGGCTTGGTTTGCGGTTAAGGTTCAATTACGAATTTGTATTTTTT
GTCCAACGCATCTGGGTACACCTGAATAGCAATCGGTGTTCGAGGAATTA
GCATTATATAATCTGTTATTCACTGTATGAATTCGTCAATTTTGGTTTCA
GGGCGAGTTACACGGCGAAAGGTTGCTTTTTTGTTGTTTCCGTGTAGTAT
GCTTCGGAGTTTGTGTTAACCGTAAAGAGAGACGAGTGCCGACCACGCTT
GTGTCCTTTCAATACTTGGCGACACGGTGCAGTAGAAAGACCGTTACGGC
GTCCTTGGTGGGGTTTATCTTGTCCGCACGATACGGTACCCCTTGCGAAA
TGCACGGCTTTCTTCGGATGCGCACATGAGGCATCCCTCCAACAAGGGTG
GTATTTTTGTAGGCGTCTCCCCCTTCCAGCATCGCGACGTTTTCAACAGC
TGTAGTTTCACTGGCCATGTCGTTTGTTTTGGCTTACATCAGACGTGTCG
CTGGAAATGTCCACGAACACCCACACACGAACACCCGTACACCACTCGCG
GGTAAGTTGCTATTAAGGGCGCTTCGTCGGACAAAGTTCTGGTGGGCGAT
ATTTCTCTTTTTGTCCCTACCTTTTGTAGGCGTCACTCCAATCCTTACCG
CCCTACAGTACTGTAGAAAACATGTGTGAAAAGCTCCGTTTCAGCGGGCA
CGCGTGAAAGATGCCACGCAAACAAGAATTCCTCTGAGTTGCTCGTCCAA
GTGGAGAAAAGGTACATCTCGTCCTGAGTCGGATGCCTCGATCCTGGCCA
CACCATGGTATTCGAAGATACCATACCTCACCATGGCACTGTACCACCTA
GACCACCACGGGCGACCGGATTCCGTGGAGCATGAAAACGAGAGTAGCAT
TGCTCCCCCAGTGTTTCATGGTCGACCTGCGGTTTCGGTTAGTCGACTCC
CTCCCCCCCCCATTACTGCTTCCTTCGTGTCTTGTGTATGGGTTCATGTT
GTGTATGGCAATGAACATAATGTAGGTGGCACTGTCCGCACGACTTCGGG
AAGGGCAGCTGAAGGTCGTGGACGACCTCAAGAGCGACGGTTTCAGGACG
TCCACCATGATCAAGACCATCAAGGTGAGCTCGAGCCCTACTCCGAATTG
CTGTGCTCGTACCGGTGCGCTGGTGATGCCCCTGTTTCTTAGACATACGC
GAGAAATGGGTACTGCTGTCTTGCATGTGTCAGAGGCTAAAGACGAGCAC
TGCTGTGATAGGTGGCCAAGCAGTGGACAACAAGATACAATCAAAAGTGG
TACGATGCTGTTCGACTAGCGGTAGTACTGTTGACGTGTTACGGTGGTAC
AAGTTCTAGTTTTTGTCTGAGATTGGCCTGGTGCTACCGAGATGCGAAGT
CCCGTTCGCTTACCCAGTGTGCTCAGCAAAATGATTCCAAGATTATTTGA
CGTGTGGGTTGAAGGGGAGAGAAACAAGCGGGCGGACTGACAGACAAGCA
CAGAGAGAGAGTAGTTTGGGGTCCGAGGCTGACTTTGACAACTCATCTCT
TGCGAAGAGCAAGGAGTCCAGGACATACACCTTCACGCCGGACGCAGCAG
TGCCACTGCTGTCAGGTCAGGTCATGTCATGTTGTCCTACCTGGGGGGGT
CCGTGCAACGCGCTTTCCTGCTGTGCTATTCGCGAGGTTGCCCATTGAGA
CAATACAATTTCGACGCATAGTGCGTCACCCGTTCCGTTAAGCCTTTTCA
ATCTTGACAGCCTCGACAACAATGGCACTCTTCCGCCCCGTGTAAAGATA
CGTGAACACCACGTAACTAAATACCGTAGTGTCGAGGAGCATCAGCACAG
CCTACATGCTGCGATCATATATACGGGCGCACACTGCACGGCGACGACGT
TCATACCGCACCTGTGTAGTCATGCCGGCCGTCGTGATCCCAATGGCACC
TACCGTACAGAAGGAGCCTGTAATTGAGAAACGTCAAATTGGGTTCAGTT
TTTCTCCTTTTTGTTTCGTTCCGTCGTCGCCACCGTCGAGCACGGGGTAG
GGTTGTTCTCTCCTGGTAGGGTTTGGTGTTATATCTGCGACTGAGCTATC
ACACCCTTGTCTCTTAACTCTTAGCGTGGTTTATTTTGCTGAAACTTCGG
GCGTCTACTCGTTAACGGAATATTTCATAGTTGCGGACCCGTTCTATAGA
GTAGCACGAACAACATCAGAGAGAAGTAGGCACACCAGGCGCAAGGCGCC
AAGTGTGAATTGGTCGCTTCTCCCGTTCACATCTCACAGAATACGGTAGG
CGGCCTTCTCAGCGACCACCCATGCGTCACGACCTTTGTTATTGTTTGCA
TGTGGGCAGGAATGAACAATTTCGGGTGTGCTTCGCTTGGTCGCATGTGA
TGCTTCCTCAACGCCCTCTCTGCCATGTGCCTTGTTTTTTTAGGAACCCA
CCACGGGTATGTTTCATCTGAACAGCAAACTATACCTCTGTCTTCGCTTG
GCACCGTTGTAAGATCGACCGCTCCTCTGCATAGTGAACCTTCACCATCC
CTGCCTTATGCATTCCCCTCCCCCGTCGCCCCACGAACGACACGCGTCTG
TCTCTTTCGAAACCCCCGCCAGGCAAGGGGAATCGACGGCCCTGTAACGT
TTGTGGTGGGGGGAGACCCTCAAGTTGAGTTCATGCGATCCATCAGCAAC
ATCGTGGGCGTCAAGGTCTTGCCTGCCCGGGTAAGGGGTCAAAGACTTAC
GACTCAATTCGTGGTTGATGATGGTGCCGAAAAAAGTGCTCCGCGTCGGA
ATGGATTTTAGCCGCGGTTGGGTACGTTCTTGAAGAAAATACCCTCCGTT
GTGCCGGAGTTCGCACGCCGCGGTGTGAGTACCGTGCCCAAGCTTGGTGC
CAGCGCGCACGCCGTGTGGTAAGGTGATGGTGTACTCGTTTCTTATGGCC
ATGTGGATAAGTGTGTAGGGAGGGGGGGGGGGGGATTACCTTTGTCTTGT
CGTTTCCATGTAATATTTCCGGCAGCGATTGGTAGGATTTCGGCTTGTAA
CTTTGTTCGCCTGTTCACGCTCAGCCAACGGCCATCGATTGATCAACTGC
TGTGGTAGCGTCACGTTCTATGTAGCTGTCGCTGCCAATCTACCCGTAGT
GCCTTACTGTATCTCGTGTCCCCGTCCCCGCCCACCGCACACGCACGCCG
CCCACGTCTCTTGCCGTGTTCAGGGAGCCAATGTGCACGACATCATCAAG
CGACCGAACTTGGTCCTAACCCAGGATGCCGTGAAGCACTTGGAGGAGTT
TCTTCACACGCCCTAGTGCCGACTGATGTTGATGTCCACGTCATCATCAA
AGATTTTCATCGCCACTTGCTCTGCGGCCGAACCAGCAGCGGTATCAAGT
GTCACCATTTTGGTGTCCCAACAATTGGGTTGCTATGTTGGTGGACGAGA
GTTGAAAGAAGTTTAAGTTTTCCCAGGGCGGCGTGAGGGGTGGTTCGCGA
AGAGACTCCTGCTCCAGAAAATGTGGTATCGCCGTCGCGCCACGCGGTAC
GCTAATCGTCTGTCTGCACGGCTGAGCCGGTTGTTCCCTGGCGGTTGTTG
TGCACAATATTGTTCGATATTCAATGGACAGATGAAGATGCACACACCGG
TAGTGACTTCGAAAGAGGAGGGCGGGCAAGTCCAAGGCACGAATGCTGAA
TCATCAGTGCATCGCCGCTGTTTGCCGGGCATATGAAGTATGCCAGGTTG
CCGAGCCGTGTGCCCCTCCCGTGAGCAGTATGATGTGACACTTGGTCATG
TCCGACTTGCATCACGGAACAACCGCTTGCTGTGATGTACTGTAGAGTTG
CAACACCTGTGTCTTGGTTGCTGGGAATGGTCCGTCCATTCGGTGGTGTG
CATAAGCTCTACAAAATGATGTTGGTCCAATGCCATCCAGGCGGTGGGCC
TTTCGACCTTTTCCCCTCGGCAGATGTATAGAAGATCCTGTCGCAGCAGT
CGCCTTAGCTACAGTAGTGCAAGGGTCAGATTGGTCGTTCCCTTAGGTTG
GAACTTGGATCAGACCGCTCAGATGCAAACGTAAAGCGGTGTGGGCAACA
AATTGGATAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1541:9757..16716-

>mRNA_Ecto-sp13_S_contig1541.4053.1 ID=mRNA_Ecto-sp13_S_contig1541.4053.1|Name=mRNA_Ecto-sp13_S_contig1541.4053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=921bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1541:9757..16716- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTTCCCGCTGGATCGATCCATGTCGTCTCTGAAATCTTCTCAGTG
GGAGCGGGAAGGTTTGCCTGTAGCACCGGTGCACAGCGGCAGCGAGCCGC
TGCCGTCGAACCTCAAGCTTGCGGCGGAGGCTTGGCCTGCTGCAACGGCG
GGAGAGGGAGGAGACGCGGAAGAGGACGCAGAAGCGGAAGACGAGGAGGA
AGAAGAGGAAACCGACCCCCTGTCGGAAGAGGACCACGATGCCATCGCAG
CCCTCCTCGACATACCCGGCCTGGCTGCCACCGACGATCTTGAGGTGGAG
GTGGTGGCCTGGGCTGACGGCGCTCCTGTGGCGACGGTATCGCTGGCGCC
TTCCGTGTTTGGCGTGCCCGTGCGAAGGGACGTCGTGCACGAAGTCGTTC
GGTGGCAGCTTGCGCGCCGTAGGAAAGGCAACGGCCAGACCAAGAGGATA
GGGGAGATCAGCGGGTCCGGGAGAAAGGTTAGGCCTCAGAAGGGGGGAGG
CGTCGCCCGCGCGGGTCACAGCCGTCCACCCCACTGGCGGGGAGGCGCCA
AGGCTCACGGTCCGAGGAGGCGGGACTTTTCCTTCAAGCTCAACAAGAAG
TTCGTCAGGCTTGGCTTGAGGGTGGCACTGTCCGCACGACTTCGGGAAGG
GCAGCTGAAGGTCGTGGACGACCTCAAGAGCGACGGTTTCAGGACGTCCA
CCATGATCAAGACCATCAAGGCAAGGGGAATCGACGGCCCTGTAACGTTT
GTGGTGGGGGGAGACCCTCAAGTTGAGTTCATGCGATCCATCAGCAACAT
CGTGGGCGTCAAGGTCTTGCCTGCCCGGGGAGCCAATGTGCACGACATCA
TCAAGCGACCGAACTTGGTCCTAACCCAGGATGCCGTGAAGCACTTGGAG
GAGTTTCTTCACACGCCCTAG
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