mRNA_Ecto-sp13_S_contig15409.4051.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15409.4051.1
Unique NamemRNA_Ecto-sp13_S_contig15409.4051.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15409.4051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15409contigEcto-sp13_S_contig15409:620..2189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size710
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.904048-UTR-Ecto-sp13_S_contig15409:619..7511681462818.904048-UTR-Ecto-sp13_S_contig15409:619..751Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15409 620..751 +
1681462818.9377396-UTR-Ecto-sp13_S_contig15409:1962..21891681462818.9377396-UTR-Ecto-sp13_S_contig15409:1962..2189Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15409 1963..2189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.914049-CDS-Ecto-sp13_S_contig15409:751..9961681462818.914049-CDS-Ecto-sp13_S_contig15409:751..996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15409 752..996 +
1681462818.9273226-CDS-Ecto-sp13_S_contig15409:1856..19621681462818.9273226-CDS-Ecto-sp13_S_contig15409:1856..1962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15409 1857..1962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15409.4051.1prot_Ecto-sp13_S_contig15409.4051.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15409 752..1962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15409.4051.1

>prot_Ecto-sp13_S_contig15409.4051.1 ID=prot_Ecto-sp13_S_contig15409.4051.1|Name=mRNA_Ecto-sp13_S_contig15409.4051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MTPRAGRCVRPCSRAVCVLVPASTVVQLPRTENPTQRLVGIGGKDTGGDV
LEALLLKAIRHNDDKHSGRRLCLAHSLHGERRQSRQPVAKFNYPRQRKVY
LSNSFCFSRRFTKAGT*
back to top

mRNA from alignment at Ecto-sp13_S_contig15409:620..2189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15409.4051.1 ID=mRNA_Ecto-sp13_S_contig15409.4051.1|Name=mRNA_Ecto-sp13_S_contig15409.4051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15409:620..2189+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGAGGGCTGGCTCTCAAGGTTTAGTCCAGCGGCTAGCGGCGGCGAGGC
TGTCAGATTGTGGCGTAGCTCGAGGTGTGTAGGAATATGCAACCATGTTA
CCCGAACATATACAGACAAATAGGCTGTATACATGACGCCAAGAGCCGGC
CGGTGCGTGCGACCGTGCAGCCGTGCAGTCTGCGTCCTGGTCCCCGCGTC
CACGGTGGTGCAGTTGCCAAGAACTGAGAATCCGACTCAAAGGCTCGTCG
GCATCGGAGGGAAGGATACTGGAGGTGACGTGCTAGAGGCCCTGCTGCTG
AAAGCAATTCGACACAACGATGATAAGCATTCGGGGCGCCGGCTGTGCCT
CGCGCACTCCTTGCACGGAGAAAGGAGGTGCGAGATCCTCGTGCCGGGAT
GGTACACATTGATTGATATAGATGGTGTTGCTCGTTTAGAAATGGGCCTT
CCCAGCCCAACGTTGACGTACGCCACACGATGGAAGGCTAGACTCATATT
TGGACGAAGCCGTAGGCCTGAGAAGCCAGCTCTGTGGCCTCGAAGACGTG
CCCCCCGTCTTCAGCATTTGGTTTAATGCTTCTCGGGAAGTGAAGACATC
GATGAGGCCGCAGAGCTTTGTAGGGCAGTGTTGAAAGGAACATCATGCAG
AGGCGTGGCAGGTGCGTCGAATCTGGCGGCACAACTAAGCAAGCACGGCT
ATGTCTGACACCGTCATCACAACACGACAAACGAAATTGTGACAGCAAGA
ATTGAACAGCAATAATGTTGAGTGACCAAACACCACAATGAAGCCAATGT
GTGGTCGGCCGATTGAAGCGCGTGGAAGTTGGCATGGGGCCTGGTGTGGG
CGTATTCTTTGTGTACCATGTTTTCATATTTTGGTAACGCCATGTATTCC
GCGAATGGTGCAGCTTGCGACGCATGTGGAACGCGGCGTCCGGTGAAAAC
TGAAAACCGATTGCAAGTCATTTCTTGACCTCACGGAGCAGCCGTATTCA
GCTCTCTCTGCGAATGAAATGCTTCAGAGGTCGTGAAACATTCCAGGAAG
CTTGCGTGACACGTTCAAGGGGGAACAGAGAATACCTACGGCATAAACCT
CGACTGGAATGCAGAGAAATGGAATTTAGGCAACTGCAGCCAGTGTGTAG
TGGACGACGCCTCTCACTGGATGCCCCCGTCTTGTGTCACCTTTCCGCGT
CTTGTCACTCGTCCCCATTCGTCCTCTACGTCCGCAGACAAAGCCGACAA
CCTGTTGCAAAATTCAACTATCCCCGACAACGGAAAGTCTACTTGAGCAA
CAGCTTTTGTTTCTCCAGGCGGTTCACTAAGGCAGGCACATGAAACCCTA
GTCGCGGCGTAGAAAATGTATTTGCTTTTGGCGGGGTATCGTAGCACGGG
GGACTCGCCGTTGTGATCCTCTGGTGGTTTCAACGACGAGCACCGGCAGC
AACAACCGGATGCCCCCAAAAGAAGGCGATACAGGGGTCACCTTCCATCG
ATTCGATTTGTAGGGAAAAGTGAGAGTGGGCGTGTGTATATACTGCGTGC
CATACCATATGCTGTCCGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15409:620..2189+

>mRNA_Ecto-sp13_S_contig15409.4051.1 ID=mRNA_Ecto-sp13_S_contig15409.4051.1|Name=mRNA_Ecto-sp13_S_contig15409.4051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15409:620..2189+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCAAGAGCCGGCCGGTGCGTGCGACCGTGCAGCCGTGCAGTCTG
CGTCCTGGTCCCCGCGTCCACGGTGGTGCAGTTGCCAAGAACTGAGAATC
CGACTCAAAGGCTCGTCGGCATCGGAGGGAAGGATACTGGAGGTGACGTG
CTAGAGGCCCTGCTGCTGAAAGCAATTCGACACAACGATGATAAGCATTC
GGGGCGCCGGCTGTGCCTCGCGCACTCCTTGCACGGAGAAAGGAGACAAA
GCCGACAACCTGTTGCAAAATTCAACTATCCCCGACAACGGAAAGTCTAC
TTGAGCAACAGCTTTTGTTTCTCCAGGCGGTTCACTAAGGCAGGCACATG
A
back to top