mRNA_Ecto-sp13_S_contig15406.4049.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15406.4049.1
Unique NamemRNA_Ecto-sp13_S_contig15406.4049.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15406.4049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15406contigEcto-sp13_S_contig15406:2145..3253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size348
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_002710.1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.8517776-CDS-Ecto-sp13_S_contig15406:2144..23091681462818.8517776-CDS-Ecto-sp13_S_contig15406:2144..2309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15406 2145..2309 -
1681462818.8628178-CDS-Ecto-sp13_S_contig15406:3070..32411681462818.8628178-CDS-Ecto-sp13_S_contig15406:3070..3241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15406 3071..3241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.8720026-UTR-Ecto-sp13_S_contig15406:3241..32531681462818.8720026-UTR-Ecto-sp13_S_contig15406:3241..3253Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15406 3242..3253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15406.4049.1prot_Ecto-sp13_S_contig15406.4049.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15406 2145..3241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15406.4049.1

>prot_Ecto-sp13_S_contig15406.4049.1 ID=prot_Ecto-sp13_S_contig15406.4049.1|Name=mRNA_Ecto-sp13_S_contig15406.4049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MWNIPCSWCRARRPLTSEAVAGCCSLPFSSRLPVVVAVCSIHPWCKVPRG
KFKDFRHERQRTSTRAHKRSKPWNRRRHRLLRVLEATPDNTAKLEYGRRA
LGWKTTFPTRA*
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mRNA from alignment at Ecto-sp13_S_contig15406:2145..3253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15406.4049.1 ID=mRNA_Ecto-sp13_S_contig15406.4049.1|Name=mRNA_Ecto-sp13_S_contig15406.4049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1109bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15406:2145..3253- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCAGTTGGTATGTGGAACATACCGTGCAGCTGGTGCCGTGCACGAAG
GCCGCTCACTTCGGAAGCGGTTGCTGGTTGCTGCAGCCTGCCGTTCTCCT
CCCGCTTGCCCGTGGTAGTAGCAGTGTGTTCGATTCATCCGTGGTGCAAA
GTGCCAAGAGGTAAGTTCAAAGATTTTCGGCATGTCAGGGCGTTTGTGTG
TCGAATACCAAGTACTTCCCACCACTGTGCTCTCTCTCAATGCAGCGTGA
TCACAGCAACGTGTGAGCTACGTACTTGTAGCCACAATGATCTTGCCCGG
GATACGTGGTGTAGTGTTGAGGGCTCAAGGAACACACAACAGTCGTCGAT
AAAATCCACGCACAAGGGCCTGTTGCAGACCCTAGCTTGGTTGGCCCTCC
CGGAACAGACAGATCTGCTTTCTCTGTAATAACTGCGAAAGTGGAGAGTG
GCGCCACTATGACACAAGATATCATACCCCCTGGGCCGAAGCTCGATTTT
CTCCACGGCAGAAAGAGCGGTTTGCATTGCACCGAATGCGGTAGTTTTCA
GACCGTCTCGTCGATATATATTTCTTATTGTTTCGTTAATTTACACATCT
TCGTCGTGGAGTAATCGAGCTTTGAAAATCAGTCCAATGGCGCGGTGGCC
TGTGTTACCCGTGTACGAATGCATACGAGGGTGTGGGGAAACGACCCTTG
CCAGGATATTTCCCATCACGGGTGCATTGCACTCCGTTGCTTCGTCGCCT
GTTTTGGCAAGTTCGGGCAGGCGGTAACAAGACAGAATTGTCCATCCCGC
ACGCTGAACATGTCTCGTGTCGTGAGTCTCAGGAGGAGGGTCTACTACAG
TACATGCCCTCGGTCGAGTGCAAGTTGACAGCTTGATAGCTCACATCCCA
CCGCCTGCCCCCTCTACACCCTAAACTAGCAGGCGTCTTACGAGGAGAGA
CAACGAACAAGCACCCGCGCACATAAACGCTCGAAACCTTGGAACCGACG
GCGTCATCGACTCTTGCGTGTGTTAGAGGCGACGCCGGACAACACAGCCA
AGCTCGAATACGGCAGGCGAGCCTTGGGGTGGAAAACCACGTTTCCGACG
AGAGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15406:2145..3253-

>mRNA_Ecto-sp13_S_contig15406.4049.1 ID=mRNA_Ecto-sp13_S_contig15406.4049.1|Name=mRNA_Ecto-sp13_S_contig15406.4049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15406:2145..3253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGAACATACCGTGCAGCTGGTGCCGTGCACGAAGGCCGCTCACTTC
GGAAGCGGTTGCTGGTTGCTGCAGCCTGCCGTTCTCCTCCCGCTTGCCCG
TGGTAGTAGCAGTGTGTTCGATTCATCCGTGGTGCAAAGTGCCAAGAGGT
AAGTTCAAAGATTTTCGGCATGAGAGACAACGAACAAGCACCCGCGCACA
TAAACGCTCGAAACCTTGGAACCGACGGCGTCATCGACTCTTGCGTGTGT
TAGAGGCGACGCCGGACAACACAGCCAAGCTCGAATACGGCAGGCGAGCC
TTGGGGTGGAAAACCACGTTTCCGACGAGAGCGTAG
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