mRNA_Ecto-sp13_S_contig15402.4047.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15402.4047.1
Unique NamemRNA_Ecto-sp13_S_contig15402.4047.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15402.4047.1 vs. uniprot
Match: D8LH24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH24_ECTSI)

HSP 1 Score: 797 bits (2059), Expect = 2.560e-277
Identity = 482/629 (76.63%), Postives = 495/629 (78.70%), Query Frame = 1 
Query:    1 QGWTKRESQRGSGRSSSAAEPALRASAAPELAGQGQKGQGQVISSTRCSDGLADDAAGSAGSNGNGTCVNRPAEGKKEESLPGFAVRSRRGSCLPQKATPSPAAMMISESMTD---ATGRGQQGECRRGSMTATLPPVVAMVETEDKRSSMTSSSTNGGSTAIASEGSNLGSICSAGETXXXXXXXXXXXXXSTAMTLGATKTKAALMNLETFGGDAVYAWGEGPAEPSEPKEXXXXXXXXXXXXXXXWSVWTRDTEAANPPPSEVGPQDAGNGSAAGVEEESARSAAGWGSKTMRERRKDACFVVVGAVDGVAEEVTDAPEDAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVKTS-AGRGSGKRGVPRKETPTAAAATVDDVLVSRVELDCRIYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLANPEEQRDMLVECCPYLDSVIPRAPPAAAAAATATVPPSLHSPTPVAPKTGLKATGSDGGAAVSGNASVDSLGSAPGASAPGVAEAERKNGDENAPKGSTAAAAAAARPREVGRPELGLGGGTARGSRRI*PRRRA*TAVAATVTAAL*PCSLRRAGEAKGFLNLWEIGLKRWQRRRR 1875
            QGWTKR S+RGSGRSSSAAEPAL ASAAPE AGQG KGQGQVISSTRCSD   DDAAGSAGSNGNG+ V RP EGK+EES PGFA R RRGSCLPQKA PSPA +M++ESMTD   AT R QQ ECRRGSM  TLPP VAM ETEDKRSSMTS  TNGGSTAIASEGSN GSI SA  T   XXXXXXXXX +TA   GATKTKA LMNLETFGGDAVYAWGEGPAEPSEPK XXXXXXXXXXXXXXXWSVW RDTEA NPPPSEVGPQDAGNGSAAG+EEE AR AAGWGSKTMRERRK+ACFVVVGAVDGVAEEVTDAPEDAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVKT+ AGRG+GKR VPRKE PTA  AT DDVLVSRVELDCR YRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLA PEEQRDMLVECCPYLDSVIPRAP A AAAA   VPPSL SPTP APKTGLKATG DGG AVSGNA VD+ GS PGASAPG AE E KNG                                                                 GEAKGFLNLWE+  KRWQRRRR
Sbjct:  169 QGWTKRGSRRGSGRSSSAAEPALPASAAPERAGQGPKGQGQVISSTRCSDDPVDDAAGSAGSNGNGSGVKRPTEGKREESSPGFAARLRRGSCLPQKAAPSPATVMMTESMTDGDDATARAQQEECRRGSMAETLPPAVAMTETEDKRSSMTS--TNGGSTAIASEGSNFGSIYSASGTTPPXXXXXXXXX-ATATAPGATKTKAGLMNLETFGGDAVYAWGEGPAEPSEPKXXXXXXXXXXXXXXXXWSVWARDTEAVNPPPSEVGPQDAGNGSAAGMEEEPARGAAGWGSKTMRERRKEACFVVVGAVDGVAEEVTDAPEDAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVKTTTAGRGNGKREVPRKEAPTAVTATADDVLVSRVELDCRTYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLATPEEQRDMLVECCPYLDSVIPRAP-ATAAAAXXXVPPSLPSPTPGAPKTGLKATGLDGGGAVSGNAPVDTPGSVPGASAPGAAETESKNG-----------------------------------------------------------------GEAKGFLNLWEMWRKRWQRRRR 728
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15402.4047.1 vs. uniprot
Match: A0A6H5JME7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME7_9PHAE)

HSP 1 Score: 758 bits (1957), Expect = 6.880e-260
Identity = 434/503 (86.28%), Postives = 450/503 (89.46%), Query Frame = 1 
Query:    1 QGWTKRESQRGSGRSSSAAEPALRASAAPELAGQGQKGQGQVISSTRCSDGLADDAAGSAGSNGNGTCVNRPAEGKKEESLPGFAVRSRRGSCLPQKATPSPAAMMISESMT---DATGRGQQGECRRGSMTATLPPVVAMVETEDKRSSMTSSSTNGGSTAIASEGSNLGSICSA-GETXXXXXXXXXXXXXSTAMTLGATKTKAALMNLETFGGDAVYAWGEGPAEPSEPKEXXXXXXXXXXXXXXXWSVWTRDTEAANPPPSEVGPQDAGNGSAAGVEEESARSAAGWGSKTMRERRKDACFVVVGAVDGVAEEVTDAPEDAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVKTSAGRGSGKRGVPRKETPTAAAATVDDVLVSRVELDCRIYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLANPEEQRDMLVECCPYLDSVIPRAPPAAAAAATATVPPSLHSPTPVAPKTGL 1497
            QGWTKRES+RGSGRSSSAAEPAL ASAAPE+AGQG+KGQGQV SSTRCSDG AD AAGSA SN NG+ V RPAEGK+EESLPGFA RSRRGSCLPQKATPSPA MM++ESMT   DAT RGQQ ECRRGSM ATLPP VAM ETEDKRSSMTSSSTNGGSTAIASEGSNLGSICSA G T  XXXXXXXXX  + A   GATK+KA +MNLETFGGDAVYAWGEGP EPS+PK+ XXXXXXXXXXXXX WSVWTRDTEA +PPP EVGPQD GNGSAAG+EEESARSA GWGSKTMRERRK+ACFVVVGAVDGVAEEVTDAPEDAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVKTSAGR +GKRGVPRKE PTA  AT DDVLVSRVELDCR YRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLA PEEQRDMLVECCPYLDSVIPRAPPAA       VPPSL SPT  APKTGL
Sbjct:  203 QGWTKRESRRGSGRSSSAAEPALPASAAPEVAGQGRKGQGQVFSSTRCSDGPADSAAGSADSNCNGSGVRRPAEGKREESLPGFAARSRRGSCLPQKATPSPATMMMTESMTYGDDATARGQQEECRRGSMAATLPPAVAMAETEDKRSSMTSSSTNGGSTAIASEGSNLGSICSASGTTSPXXXXXXXXXTVAVATAPGATKSKAGVMNLETFGGDAVYAWGEGPVEPSKPKKEXXXXXXXXXXXXXEWSVWTRDTEAVSPPPCEVGPQDGGNGSAAGMEEESARSAPGWGSKTMRERRKEACFVVVGAVDGVAEEVTDAPEDAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVKTSAGRVNGKRGVPRKEAPTAVTATADDVLVSRVELDCRTYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLATPEEQRDMLVECCPYLDSVIPRAPPAAXXXXXX-VPPSLPSPTSDAPKTGL 704
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15402.4047.1 vs. uniprot
Match: A0A485KAZ9_9STRA (Aste57867_1584 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAZ9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.280e-17
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 1 
Query:  901 FVVVGAVDGVAEEVTDAPE-DAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVKTSAGRGSGKRGVPRKETPTAAAATVDDVLVSRVELDCRIYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLANPEEQRDMLVECCPYL 1392
            F + G +DG A+ +  + + D ++W T  ++VEVKNRM +  +P PL+D IQ+  YM MI    GD+VQ +  +            + T   +  ++D   ++     C        W  +V+PRLYE+A +VY FR  DL R  ++ A PE QR ML E   YL
Sbjct:  247 FSICGMIDGTADMLVISDDNDDDTWSTEPILVEVKNRMARFRDPVPLHDCIQMAVYMKMINVRHGDMVQCLHRN-----------DETTIHISRVSLDAYPLTAAAAPCACQCTTDLWASLVVPRLYEYATLVYLFRTQDLRRLAFMQAPPETQRRMLREALNYL 400
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15402.4047.1 vs. uniprot
Match: A0A8J9SH23_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SH23_PHATR)

HSP 1 Score: 82.0 bits (201), Expect = 2.290e-12
Identity = 63/178 (35.39%), Postives = 89/178 (50.00%), Query Frame = 1 
Query:  901 FVVVGAVDGVAEEVTDAPEDAESWET--------RRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVK---TSAGRGSGKR------------GVPRKETPTAAAATVDDVLVS-------RVELDCRIYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLA 1344
            F +VG+VDG+ EE+  +P+ + S  T        R V+VE K+RM KA   PPLY+QIQ +TY LM   S  D+VQ ++   +++G+GS                   +    AAA+T     VS       RV L+  + +H+  W   VLPRL  F   VY  R  D  R+R L+A
Sbjct:  329 FSIVGSVDGLREELF-SPDTSCSVSTEFGADLALRTVIVECKHRMRKALVVPPLYEQIQTITYCLMYEVSEADIVQVLRHDPSASGKGSCASVENNKALDAWVVSTQNQGKSAAAASTTKLSAVSKPTLTTYRVSLNDPVMQHQSQWRDTVLPRLRSFVEAVYAIRASDDKRYRLLVA 505
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15402.4047.1 vs. uniprot
Match: A0A8J2SUX4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUX4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.440e-10
Identity = 58/167 (34.73%), Postives = 78/167 (46.71%), Query Frame = 1 
Query:  892 DACFVVVGAVDGVAEEVTDAPEDAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVTYMLMIGASVGDLVQFVKTSAGRGSGKRGVPRKETPTAAAATVDDVLVSRVELDCRIYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLANPEEQRDMLVECCPYL 1392
            D  F VVG VD V+ E  D+           +V+EVKNRM++    P LYD++Q+VTY+ M+G S GDLVQ +K S                  A   VD +L S          H   W +VVLPRL   A  V   R D+  R  +L A+  E++      C +L
Sbjct:  452 DELFRVVGYVDAVSPENDDS-----------IVIEVKNRMHQV-RAPELYDKLQVVTYLQMLGWSRGDLVQRIKDS----------------PDAPVRVDRILRSE---------HENDWDRVVLPRLRAVAEAVLSLRADEGRRRAWLAASAYERKTTAAALCVFL 581
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15402.4047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LH24_ECTSI2.560e-27776.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JME7_9PHAE6.880e-26086.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485KAZ9_9STRA4.280e-1734.55Aste57867_1584 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8J9SH23_PHATR2.290e-1235.39Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A8J2SUX4_9STRA1.440e-1034.73Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15402contigEcto-sp13_S_contig15402:3..3659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score647.1
Seed ortholog evalue6.3e-183
Seed eggNOG ortholog2880.D8LH24
Model size2865
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2E1QQ@1,2S90U@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010950.1
Cds size1422
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15402.4047.1prot_Ecto-sp13_S_contig15402.4047.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15402 315..2528 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.7126296-UTR-Ecto-sp13_S_contig15402:2..3141681462818.7126296-UTR-Ecto-sp13_S_contig15402:2..314Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15402 3..314 +
1681462818.7829552-UTR-Ecto-sp13_S_contig15402:2528..36591681462818.7829552-UTR-Ecto-sp13_S_contig15402:2528..3659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15402 2529..3659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.7296994-CDS-Ecto-sp13_S_contig15402:314..10611681462818.7296994-CDS-Ecto-sp13_S_contig15402:314..1061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15402 315..1061 +
1681462818.7512765-CDS-Ecto-sp13_S_contig15402:1285..15761681462818.7512765-CDS-Ecto-sp13_S_contig15402:1285..1576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15402 1286..1576 +
1681462818.7637904-CDS-Ecto-sp13_S_contig15402:2131..24201681462818.7637904-CDS-Ecto-sp13_S_contig15402:2131..2420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15402 2132..2420 +
1681462818.7736926-CDS-Ecto-sp13_S_contig15402:2433..25281681462818.7736926-CDS-Ecto-sp13_S_contig15402:2433..2528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15402 2434..2528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15402.4047.1

>prot_Ecto-sp13_S_contig15402.4047.1 ID=prot_Ecto-sp13_S_contig15402.4047.1|Name=mRNA_Ecto-sp13_S_contig15402.4047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=474bp
MMISESMTDATGRGQQGECRRGSMTATLPPVVAMVETEDKRSSMTSSSTN
GGSTAIASEGSNLGSICSAGETTPPPRAAAAAAAASTAMTLGATKTKAAL
MNLETFGGDAVYAWGEGPAEPSEPKEEHEAAAEEEEPEEEEWSVWTRDTE
AANPPPSEVGPQDAGNGSAAGVEEESARSAAGWGSKTMRERRKDACFVVV
GAVDGVAEEVTDAPEDAESWETRRVVVEVKNRMYKATNPPPLYDQIQLVT
YMLMIGASVGDLVQFVKTSAGRGSGKRGVPRKETPTAAAATVDDVLVSRV
ELDCRIYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLANPEEQR
DMLVECCPYLDSVIPRAPPAAAAAATATVPPSLHSPTPVAPKTGLKATGS
DGGAAVSGNASVDSLGSAPGASAPGVAEAERKNGDENAPKGSTAAAAAAA
RPREVGRPELGLGGGTARGSRRI*
back to top

mRNA from alignment at Ecto-sp13_S_contig15402:3..3659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15402.4047.1 ID=mRNA_Ecto-sp13_S_contig15402.4047.1|Name=mRNA_Ecto-sp13_S_contig15402.4047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15402:3..3659+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGTGGACGAAGAGAGAATCGCAACGAGGTTCCGGTCGTTCCTCATC
GGCAGCAGAGCCGGCATTACGCGCTAGCGCCGCGCCCGAGCTTGCTGGAC
AAGGCCAAAAAGGACAAGGACAAGTCATCTCGTCGACCAGGTGCTCCGAT
GGCCTTGCGGATGATGCCGCCGGTAGCGCTGGCAGCAACGGTAACGGTAC
CTGCGTGAACCGACCTGCAGAGGGTAAGAAGGAGGAGTCATTGCCGGGCT
TCGCTGTGCGGTCAAGGAGAGGGTCGTGTTTGCCTCAGAAGGCGACTCCG
TCGCCTGCGGCCATGATGATATCGGAGTCGATGACTGATGCAACCGGTAG
AGGTCAACAGGGAGAATGCCGGAGGGGCAGCATGACGGCGACCTTACCGC
CGGTGGTGGCGATGGTGGAGACCGAGGACAAGCGGAGTTCCATGACGTCA
TCCTCCACAAACGGAGGTTCGACCGCGATCGCCTCTGAGGGAAGCAATTT
AGGCAGCATCTGTAGCGCGGGTGAAACCACGCCGCCGCCGCGAGCAGCAG
CAGCAGCAGCAGCAGCATCGACGGCAATGACACTAGGGGCCACAAAGACA
AAGGCCGCTTTGATGAACTTGGAGACCTTCGGGGGCGACGCCGTTTACGC
GTGGGGGGAAGGCCCTGCCGAGCCATCCGAACCAAAGGAAGAACACGAAG
CGGCAGCCGAAGAAGAAGAGCCGGAAGAAGAGGAGTGGTCGGTTTGGACC
CGAGATACGGAGGCGGCGAACCCGCCGCCGTCTGAGGTAGGACCCCAGGA
CGCCGGTAACGGTAGCGCTGCGGGAGTGGAGGAGGAATCAGCGAGGAGTG
CTGCCGGATGGGGGTCGAAGACGATGAGGGAGAGGAGGAAGGATGCGTGT
TTTGTGGTCGTAGGAGCCGTGGACGGTGTCGCCGAGGAGGTAACCGATGC
CCCGGAGGACGCCGAGAGTTGGGAGACGAGGCGGGTAGTGGTGGAGGTGA
AGAACAGGATGTACAAGGCGACCAATCCTCCTCCACTCTATGACCAGATC
CAGCTCGTGGTGAGTCAATCATGGGGGGAGAGTGTATCATGTATCATACC
CGCTGTTGCTGGTCGTCCAAGTGCCGGAGAATCGTTGTGTGATGCGGCTC
GCAGCAAAACATCGCACGAGACACGAGGCTACCATACAGCCGCCTTCGCC
GATTCAGCCCCTTCCCCTTTTTTTCTCCTCGTGTGTTTCACGAATTTCGT
GTGTCGTGTGTCCCCCTAACCCATGGCTGGCAGACGTATATGCTCATGAT
CGGGGCCAGCGTCGGCGACTTGGTGCAGTTCGTCAAGACCAGCGCTGGCC
GCGGAAGCGGCAAAAGAGGAGTTCCAAGGAAAGAGACGCCGACGGCAGCT
GCAGCGACGGTAGACGATGTGCTAGTGTCCCGGGTGGAGCTTGACTGCCG
GATCTACCGCCACCGCAAGCACTGGGGACAGGTGGTCCTGCCCCGTCTCT
ATGAATTTGCCAGGATGGTGTACAGGTTTAGGGGGGACGACCTCTTGAGG
TGGCGCTACCTGCTTGCGAACCCGGTGAGTTTCGTTGTTGGCAACGAGTG
GCGTGCACGCCTGATGGCTCCGTTCCTTTGGGATTTTATCGTTCAATGGC
GCTTGGAGGTGGACATGTGTCAACATCTCGGTGTCTGTATTGTAGGCTTG
CGTACCTGTTGTACATGTCGGGTATTGTTTCTCACGGGAGTTTCATGAGC
CTTCCTCGTTTGCTCCCCGTCTTGGTGTTGACATTGGCTCCTTTCATGTT
TTTCTGATCGAGTTCGTGTGGCCAACTGCCGAGTTCTTGCCGAATCGTAC
CGCACAGGCAGTCGAGGGTTGAGAACGGGTACGCGCTACAATGAAGTAGC
AGTTACCTTCTGGCGTCAACAGTCCCACCTACCCTCTATTTGTGACCGAA
AGCCTCCCAATATTGTATCACATGGTGTGTGTTCGTCGGCTATATGATAT
GCCCATCAACACCCGCCTCCCTCGTTGTCCAGCACGTACATGCCTATAAC
TAAGAACTCGACAAACCTATTGATGGCGTCTCGACCACCGTTGCGTACAT
GACTTCGTGTTTACTGTTGTTGCCCCCAGGAGGAGCAGCGGGATATGCTG
GTGGAATGCTGCCCTTACTTGGACAGCGTCATCCCACGGGCGCCACCAGC
AGCAGCAGCAGCGGCGACGGCGACAGTGCCACCGTCTCTGCACTCTCCAA
CCCCGGTTGCCCCCAAGACGGGACTCAAGGCGACTGGCTCAGACGGTGGT
GCAGCGGTCTCAGGAAACGCCTCCGTCGATAGTCTCGGGTCGGCGCCTGG
TGCGTCGGCGCCTGGTGTGGCAGAGGCCGAGAGGAAGAACGGCGATGAGA
ATGCGCCGAAGGGTAGCAGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGC
GGCACGGCCGAGGGAGGTCGGGCGGCCAGAGCTGGGTCTGGGGGGGGGCA
CGGCGAGGGGGTCCCGCAGAATCTAGCCGAGGCGGAGAGCATGAACAGCA
GTAGCCGCCACGGTAACGGCAGCACTGTGACCGTGCTCTCTCAGAAGAGC
AGGCGAGGCCAAGGGTTTCTTGAACCTCTGGGAGATAGGGCTGAAGCGGT
GGCAGCGGCGGCGGCGGTAACGTCCCCTGCTCGCAAGAAAACCAAGGCCG
AGCCGGCAACTGCCTCCGTCGCCCAAGGCGTGGCGCTCTAGACCGGTCGA
TGACTTTGTTTAGGCCCAGCAGCCGTTGCTTTCGGGGGAGGGTTGTCGGG
AGCAGCTCATTGGTTGGGTGTCCAACTTTGTTGGCTCGCACACGTAAGAG
GTAAATTGTTTTTACGTTCATTGGTGCAGTGGTGTCTGGTGACCCGTCGA
CTGAAGCTTGAATGTAGGATTGGCATCATCATCCCTCTTTCTGAACAAGA
TTCGGATCCTATATTTGGTTTCTTCTTTTCTCGTAAGGCACTTGTACAGC
AGTAGACAGGATAGGTATGTCCAATTTTGACGACCCGCGGTGGGTGGGTT
CCGTCAAGAAACGGTATACCTGGTACTACATGCAAAAAGTTGTTTTTAAA
GAATTCTGTAGTTAGTGTGAAACGAAGTTTTGCATGTGGGCAAGCTTGAC
AAGGGCCTGAGTAAGTCGTATCTGGTGTTTGTTGTTTTGTTTTGGTTGTC
CGGCCGGCCACGATTTGAGCGGGCTCATTTCGTTAACGCAGGCACTTGAG
TGTCTTTTCTCTCTGGGTGTTACCTCATGTATGCATATGCTCGTTTGTAC
GCTAGCAGCAGGTAGGCGTCAACGCGTGTACGTATGTTTTCCTTTGCGTG
TGGGAACACATGTGTGGATCGGGGGTTCAGAAAGCTGACCAGCGTGCATT
TTTTGGAACTGCAAGTCGATCATTGTGTGTTGTGTAGACTGCACATATAC
TCTAGTTCATGGTGTTTCATCAAGCAAGCCGTTTCGGGGCTCTTATCCTT
GCCTTAGTATCGCTTCCATCGAGTGAGAATATATATGGTGATGGCTTCAC
GACGCGTAAGCCTTACACTGGTTGGGCCTTACGGTGGTATTTTTCCTGTA
CGACCCTCGCATCATTTCCTTAGCTTCCGAGTCAAGACGGGGAGCATTTC
GGGCATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15402:3..3659+

>mRNA_Ecto-sp13_S_contig15402.4047.1 ID=mRNA_Ecto-sp13_S_contig15402.4047.1|Name=mRNA_Ecto-sp13_S_contig15402.4047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1422bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15402:3..3659+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATATCGGAGTCGATGACTGATGCAACCGGTAGAGGTCAACAGGG
AGAATGCCGGAGGGGCAGCATGACGGCGACCTTACCGCCGGTGGTGGCGA
TGGTGGAGACCGAGGACAAGCGGAGTTCCATGACGTCATCCTCCACAAAC
GGAGGTTCGACCGCGATCGCCTCTGAGGGAAGCAATTTAGGCAGCATCTG
TAGCGCGGGTGAAACCACGCCGCCGCCGCGAGCAGCAGCAGCAGCAGCAG
CAGCATCGACGGCAATGACACTAGGGGCCACAAAGACAAAGGCCGCTTTG
ATGAACTTGGAGACCTTCGGGGGCGACGCCGTTTACGCGTGGGGGGAAGG
CCCTGCCGAGCCATCCGAACCAAAGGAAGAACACGAAGCGGCAGCCGAAG
AAGAAGAGCCGGAAGAAGAGGAGTGGTCGGTTTGGACCCGAGATACGGAG
GCGGCGAACCCGCCGCCGTCTGAGGTAGGACCCCAGGACGCCGGTAACGG
TAGCGCTGCGGGAGTGGAGGAGGAATCAGCGAGGAGTGCTGCCGGATGGG
GGTCGAAGACGATGAGGGAGAGGAGGAAGGATGCGTGTTTTGTGGTCGTA
GGAGCCGTGGACGGTGTCGCCGAGGAGGTAACCGATGCCCCGGAGGACGC
CGAGAGTTGGGAGACGAGGCGGGTAGTGGTGGAGGTGAAGAACAGGATGT
ACAAGGCGACCAATCCTCCTCCACTCTATGACCAGATCCAGCTCGTGACG
TATATGCTCATGATCGGGGCCAGCGTCGGCGACTTGGTGCAGTTCGTCAA
GACCAGCGCTGGCCGCGGAAGCGGCAAAAGAGGAGTTCCAAGGAAAGAGA
CGCCGACGGCAGCTGCAGCGACGGTAGACGATGTGCTAGTGTCCCGGGTG
GAGCTTGACTGCCGGATCTACCGCCACCGCAAGCACTGGGGACAGGTGGT
CCTGCCCCGTCTCTATGAATTTGCCAGGATGGTGTACAGGTTTAGGGGGG
ACGACCTCTTGAGGTGGCGCTACCTGCTTGCGAACCCGGAGGAGCAGCGG
GATATGCTGGTGGAATGCTGCCCTTACTTGGACAGCGTCATCCCACGGGC
GCCACCAGCAGCAGCAGCAGCGGCGACGGCGACAGTGCCACCGTCTCTGC
ACTCTCCAACCCCGGTTGCCCCCAAGACGGGACTCAAGGCGACTGGCTCA
GACGGTGGTGCAGCGGTCTCAGGAAACGCCTCCGTCGATAGTCTCGGGTC
GGCGCCTGGTGCGTCGGCGCCTGGTGTGGCAGAGGCCGAGAGGAAGAACG
GCGATGAGAATGCGCCGAAGGGTAGCACAGCAGCGGCAGCAGCAGCGGCA
CGGCCGAGGGAGGTCGGGCGGCCAGAGCTGGGTCTGGGGGGGGGCACGGC
GAGGGGGTCCCGCAGAATCTAG
back to top