mRNA_Ecto-sp13_S_contig154.4043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig154.4043.1
Unique NamemRNA_Ecto-sp13_S_contig154.4043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig154.4043.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 2.250e-54
Identity = 129/362 (35.64%), Postives = 191/362 (52.76%), Query Frame = 1 
Query:    1 MCTENICSTFIWRGPGYPEHDTGGLCSCVCEDGTWSNWNILGRASCVPVVVHTIFGGAGLTVSVAVLFHAIYHLHRQQTYFHAQCTSASTSAIERCRWQLHTTTVTVATVNICYFSLVL---ADVLRWSVVVIVVNGIPQFIGSVILSSRMWMYTLSNRHEINTLARANDPRLTRESPEIIALSAWLERPRGYITACCTMSFAPGVATVLALAKYTESAVRFIALGGVIVGTIILAVFWVC--GRSLMRAIDTSLQ--LQTSFPSTGKVEGQNGGRGYRTLLEAKRKVRRIMTVTAGLLVPAIAVVAMAIFTPYGIQAPLLMFCVPFGFVPQIWLSMNIQLHAKRSRLRQGHTGTPISAWAS 1065
            MC ++ C T +W G G       G C C C + TWS +NI+G  SCVP   H +FG  G+ ++   L H+ Y L+RQ  + H Q  +AS S++E+CR  LH   +  A + +CYF +VL   ++ L  S + ++  G        IL+ RMW+Y              NDPRLTRE+PEI+A+S  LERP G   +   M   P +ATVLA+AK  ++A +  A+    +G I+   F +   G +L+R ++  L+  ++ S  S   V G  G      LL+A RK  +       ++    A + + +FT YG  APL+ F +P+GF P +W   N+QLHA RSR R   T T + + AS
Sbjct:    1 MCGQD-CQTILWGGTGISTVGADGACRCACGNETWSEYNIVGLPSCVPSKAHVVFGTVGVLMATTSLCHSAYQLYRQVKH-HRQVITASISSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMLSAGQTMMTIGGILTVRMWIY-------------CNDPRLTRETPEILAISEALERPTGCFVSNTVMCVGPAIATVLAVAKSLQAAGKVSAVA--FLGLIVFCDFIILKSGTALLRTVNKYLRNTVERSERSNSIVAGTVGS---LPLLKAARKNIKFALYFCLVVSLLTAFLMICLFTTYGATAPLIFFGIPYGFSPPVWFVFNVQLHAGRSRSR---TSTDVVSGAS 339
[Close]
BLAST of mRNA_Ecto-sp13_S_contig154.4043.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.410e-52
Identity = 149/422 (35.31%), Postives = 207/422 (49.05%), Query Frame = 1 
Query:    1 MCTENICSTFIWRGPGYPEHDTGGLCSCVCEDGTWSNWNILGRASCVPVVVHTIFGGAGLTVSVAVLFHAIYHLHRQQTYFHAQCTSASTSAIERCRWQLHTTTVTVATVNICYFSLVLA-DVLRWSVVVIVVNGIPQFIGSV--ILSSRMWMYTLSN------------------RHEINTLARANDPRLTRESPEIIALSAWLERPRGYITACCTMSFAPGVATVLALAKYTESA--VRFIALGGVIVGTIILAVFWVCGRSLMRAIDTSLQLQTSFPSTGKVEGQN------GGRGYRTLLEAKRKVRRI---MTVTAGLLVPAIAVVAMAIFTPYGIQAPLLMFCVPFGFVPQIWLSMNIQLHAKRSRLRQGHTGTPISAWASGPLSRPAPSRLLNSLPRP------HEGRIVPTNDP 1152
            MC ++ C T +W G G       G C C C D TWS +NILG  SCVP   H +FG  G+ V++  L HA Y L+RQ  Y H Q  +ASTS++E+CR  LH   +  A + +CYF +VL  D  R  +  I + GI Q + ++  IL+ RMW+Y L++                  R+ I  LA +NDPRL RE+PE++ +S  LERP G   +   M   P VATVLA AK  ++A  V  +A  G+IV          C   +++     LQ    +     V  +       G  G   LL+A RK  +      V   LL    ++V + +FT YG  APL+   +P+G  P +W   NIQLHA RSR R   T   + + AS  + R  PS     + R       +E  +VPT  P
Sbjct:    1 MCGQD-CQTSLWGGTGISTVGADGGCRCACGDETWSEYNILGLPSCVPSKAHAVFGAVGVFVTMTSLGHAAYQLYRQVKY-HRQFMAASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMFGIGQIMMTIGGILTVRMWLYCLTSDEQRSPLQLNRFPYVSPLRNHILFLA-SNDPRLIRETPELLMISEALERPTGLFVSNTVMCVGPAVATVLAAAKSLQAACMVSAVAFLGLIV---------FCDFIILKTATALLQTVNKYLRNSVVRSEKSNSIMAGTVGSLQLLKAARKNIKFALYFCVVVSLL--TFSIVMIGLFTTYGATAPLIFSGIPYGCSPPVWFVFNIQLHAGRSRNR---TEPDVVSRASSVI-RQVPSVATRIVSRAKGVVFGNERSVVPTLTP 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig154.4043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCB1_ECTSI2.250e-5435.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM92_9PHAE1.410e-5235.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig154contigEcto-sp13_S_contig154:22776..25401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1167
Hectar predicted targeting categoryother localisation
Exons4
Cds size1167
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.460613-CDS-Ecto-sp13_S_contig154:22775..230061681462818.460613-CDS-Ecto-sp13_S_contig154:22775..23006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig154 22776..23006 +
1681462818.471329-CDS-Ecto-sp13_S_contig154:23937..242001681462818.471329-CDS-Ecto-sp13_S_contig154:23937..24200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig154 23938..24200 +
1681462818.4810286-CDS-Ecto-sp13_S_contig154:24435..246111681462818.4810286-CDS-Ecto-sp13_S_contig154:24435..24611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig154 24436..24611 +
1681462818.4903316-CDS-Ecto-sp13_S_contig154:24904..254011681462818.4903316-CDS-Ecto-sp13_S_contig154:24904..25401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig154 24905..25401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig154.4043.1prot_Ecto-sp13_S_contig154.4043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig154 22776..25401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig154.4043.1

>prot_Ecto-sp13_S_contig154.4043.1 ID=prot_Ecto-sp13_S_contig154.4043.1|Name=mRNA_Ecto-sp13_S_contig154.4043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=389bp
MCTENICSTFIWRGPGYPEHDTGGLCSCVCEDGTWSNWNILGRASCVPVV
VHTIFGGAGLTVSVAVLFHAIYHLHRQQTYFHAQCTSASTSAIERCRWQL
HTTTVTVATVNICYFSLVLADVLRWSVVVIVVNGIPQFIGSVILSSRMWM
YTLSNRHEINTLARANDPRLTRESPEIIALSAWLERPRGYITACCTMSFA
PGVATVLALAKYTESAVRFIALGGVIVGTIILAVFWVCGRSLMRAIDTSL
QLQTSFPSTGKVEGQNGGRGYRTLLEAKRKVRRIMTVTAGLLVPAIAVVA
MAIFTPYGIQAPLLMFCVPFGFVPQIWLSMNIQLHAKRSRLRQGHTGTPI
SAWASGPLSRPAPSRLLNSLPRPHEGRIVPTNDPLSVP*
back to top

mRNA from alignment at Ecto-sp13_S_contig154:22776..25401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig154.4043.1 ID=mRNA_Ecto-sp13_S_contig154.4043.1|Name=mRNA_Ecto-sp13_S_contig154.4043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2626bp|location=Sequence derived from alignment at Ecto-sp13_S_contig154:22776..25401+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTACTGAGAACATCTGCAGCACTTTCATTTGGAGAGGCCCAGGGTA
CCCTGAGCACGACACTGGCGGATTATGCTCCTGCGTGTGCGAGGATGGCA
CCTGGTCGAACTGGAACATCCTCGGGCGCGCATCGTGTGTGCCGGTAGTG
GTGCACACTATTTTCGGTGGGGCCGGGCTGACTGTTTCCGTGGCAGTCCT
CTTCCATGCGATCTACCACCTACATAGACAGGTACGCCAAGAGACATCTT
GTGAGCGTAATGGAGTCTCTACTGTAGAGAGGGAGGCCCTCAAAAATCAA
GACCAGTTGTTGAGGACCAAATGTAGTAAATTCAGAAGTATGCACAACAT
TTTGTGTGCAAAGAATGCAAAGCATACGTATTGTAGTTTATCGAGTACAA
AATACTCAGCAGGTAGGTCTACGGTAGGTAGATACGTCACTGTGTGCATG
TAAATGTGAACGCTGCAGTTCAACGGCCCCAACGAAGGATTACTCCTGCT
TGGTATAGACTATATATCGGTACGTAAATGCCTGTCTATGTACCTCACTC
GGCGGGTTTTTGTGGAACGCATCGATCGGTCTACATCGCCCTCACGATAC
TGATAGGATAGACTATTAGCGGGTGGGTGCGGAATGATAGTATGATTCGA
ACTGGGGATAGCTTGTCGCAAAAGTTGTGTGTTGAACGGGGTATCGGCAA
CTCGCCGGGCTCATGCCAACGAGGAAGTCTTGTGTTTGTTGTGTTGTGAT
TAGGCTTGCTCATCTGTTACACACGCACCAGCCTGGGGGGCGCGCAATAT
TCAGCAGGAGGGGTAGCACACAATTACCCGGTATCCGCTCAATGGATTTC
CATGGGAACGTACCGTACCATCCACTTGCATTATCTACAAGCATACCGCG
GAAGAGCCCGGCAATCGACTACTAGCACCATGGAAGATAGCTTTTGCTGC
CAACTGTCACCGATTTGCTGCAGAATAAAGTATCCCTGTCATCGCACCTT
CATATAGACCAATATCTAACGTGCAGGTGCGGCTGTGTACGAACGTTTCC
TCACTTCTTGTCTTCCTGTGCATCACTTGTCGTAATACGAGATAAAAAAA
ACGCTCTCGGTTCTCTCCTCCTCTCCTTCTGCGGCATGTTATTGCTTGCA
ACGCCATACGAGCAGACCTACTTCCACGCACAATGCACATCGGCTTCGAC
TTCGGCGATAGAGCGGTGCCGCTGGCAACTTCATACCACAACGGTAACTG
TGGCTACCGTCAACATCTGCTACTTCTCCCTGGTGCTCGCAGACGTCTTG
CGATGGTCTGTCGTGGTGATCGTGGTGAATGGGATCCCGCAGTTCATCGG
ATCCGTCATCCTCTCCAGCCGAATGTGGATGTACACGTTGAGTAACAGGC
ATGAAATAAACACCCTGGCGAGGGCGTTGATTTATTGGAACGCCGTACAC
AAATTGTGGACCGGTCTTAATGAGCGTTCTTCGTGAGAGGATGCAGCCAT
TCGTTCCAAAGCTTCGCCCAGACGTTTAGCCGCCCGTTCATGCATTGGGC
AGGCATGCGTTTGGCTCCTCCTGCGCTGTATGCTCTTGACCACATTGATT
GCTGCCGTCAACAATATCCTCTTCATTTTCACCATCGGCCGGGTTTACAT
GCCGTTATAGGAACGATCCTCGACTGACGAGAGAAAGCCCGGAGATTATC
GCGTTATCTGCCTGGCTTGAACGGCCACGAGGGTACATAACGGCGTGCTG
CACGATGTCGTTCGCTCCGGGTGTCGCAACTGTTCTCGCTCTGGCGAAAT
ACACGGAGTCTGCCGTGCGCTTTATTGCACTTGGAGGTCGGTCGGTCAAG
GAGGGAGCGAATAATGGGCCGTGGACATTTCCAAAACAATCATGGATTTC
GCTATGCAAAGAGTGGGTGTACGGGATCCGTACTCTGACGACTAGGATAA
TAATATGAGGAACACAACAATACTGCCTTGTGCGCTACTCTTCCATGTGT
CCACTTCACAAAACGTGTCAACGGATAACGAAAGCGTCGCGTGTGGGTTA
AAACGATAGTCTGCCCGTATTCTGCTCCTCTCACGACCCAAGCCCTCTTT
CACCGCTTTCGCAACCGGACGCATTGCAGGTGTTATTGTTGGCACAATTA
TCCTAGCAGTATTCTGGGTGTGCGGGAGATCCCTGATGCGCGCCATTGAC
ACTTCACTGCAGCTGCAGACGTCGTTCCCATCGACGGGGAAAGTAGAAGG
TCAGAACGGTGGCCGGGGATACCGGACCCTGTTGGAAGCGAAAAGGAAGG
TCAGGCGTATAATGACTGTGACTGCAGGCCTGCTTGTTCCGGCTATCGCA
GTGGTTGCGATGGCCATCTTCACGCCGTACGGGATTCAGGCGCCACTCCT
CATGTTTTGTGTACCGTTCGGGTTTGTGCCGCAAATCTGGCTAAGCATGA
ACATCCAGCTACATGCCAAGAGAAGCCGTCTGCGCCAAGGGCATACCGGA
ACGCCTATTTCAGCCTGGGCTAGCGGACCGCTATCCAGGCCCGCGCCTTC
TCGCTTGCTAAATTCACTCCCACGCCCCCATGAAGGGCGCATAGTTCCTA
CAAACGACCCTTTGTCGGTACCTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig154:22776..25401+

>mRNA_Ecto-sp13_S_contig154.4043.1 ID=mRNA_Ecto-sp13_S_contig154.4043.1|Name=mRNA_Ecto-sp13_S_contig154.4043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig154:22776..25401+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTACTGAGAACATCTGCAGCACTTTCATTTGGAGAGGCCCAGGGTA
CCCTGAGCACGACACTGGCGGATTATGCTCCTGCGTGTGCGAGGATGGCA
CCTGGTCGAACTGGAACATCCTCGGGCGCGCATCGTGTGTGCCGGTAGTG
GTGCACACTATTTTCGGTGGGGCCGGGCTGACTGTTTCCGTGGCAGTCCT
CTTCCATGCGATCTACCACCTACATAGACAGCAGACCTACTTCCACGCAC
AATGCACATCGGCTTCGACTTCGGCGATAGAGCGGTGCCGCTGGCAACTT
CATACCACAACGGTAACTGTGGCTACCGTCAACATCTGCTACTTCTCCCT
GGTGCTCGCAGACGTCTTGCGATGGTCTGTCGTGGTGATCGTGGTGAATG
GGATCCCGCAGTTCATCGGATCCGTCATCCTCTCCAGCCGAATGTGGATG
TACACGTTGAGTAACAGGCATGAAATAAACACCCTGGCGAGGGCGAACGA
TCCTCGACTGACGAGAGAAAGCCCGGAGATTATCGCGTTATCTGCCTGGC
TTGAACGGCCACGAGGGTACATAACGGCGTGCTGCACGATGTCGTTCGCT
CCGGGTGTCGCAACTGTTCTCGCTCTGGCGAAATACACGGAGTCTGCCGT
GCGCTTTATTGCACTTGGAGGTGTTATTGTTGGCACAATTATCCTAGCAG
TATTCTGGGTGTGCGGGAGATCCCTGATGCGCGCCATTGACACTTCACTG
CAGCTGCAGACGTCGTTCCCATCGACGGGGAAAGTAGAAGGTCAGAACGG
TGGCCGGGGATACCGGACCCTGTTGGAAGCGAAAAGGAAGGTCAGGCGTA
TAATGACTGTGACTGCAGGCCTGCTTGTTCCGGCTATCGCAGTGGTTGCG
ATGGCCATCTTCACGCCGTACGGGATTCAGGCGCCACTCCTCATGTTTTG
TGTACCGTTCGGGTTTGTGCCGCAAATCTGGCTAAGCATGAACATCCAGC
TACATGCCAAGAGAAGCCGTCTGCGCCAAGGGCATACCGGAACGCCTATT
TCAGCCTGGGCTAGCGGACCGCTATCCAGGCCCGCGCCTTCTCGCTTGCT
AAATTCACTCCCACGCCCCCATGAAGGGCGCATAGTTCCTACAAACGACC
CTTTGTCGGTACCTTGA
back to top