mRNA_Ecto-sp13_S_contig15395.4041.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15395.4041.1
Unique NamemRNA_Ecto-sp13_S_contig15395.4041.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15395.4041.1 vs. uniprot
Match: A0A6H5L1R5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.390e-38
Identity = 128/188 (68.09%), Postives = 130/188 (69.15%), Query Frame = 3 
Query:  237 MQQARSLVFGLRPPPCRASSVLSFTQPARPWISQPASALHNCSRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----RAGWGMVLEGPGAFSVAARRGRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAHGESEVEDDEGGDGLLAALADELVWEGDDD 788
            MQQARSLVFGLRPP CRASSVLSFTQPARPW+SQPASALH+CSRH                                 XXXXXXXX    R  WGM LE PGAFS   RRGRPAAXXXXXXX           XXXXXXXXXXXXXXXXXXXXX  SAHGESEVEDDEGGDGLLAALADELVWEGDDD
Sbjct:    1 MQQARSLVFGLRPPTCRASSVLSFTQPARPWMSQPASALHSCSRHHSGGCGTSSSRQAPRAADPVSRNGAMMSSTDSSXXXXXXXXSRSKRLRWGMALECPGAFSAVPRRGRPAAXXXXXXXLLGHHEARMFLXXXXXXXXXXXXXXXXXXXXX--SAHGESEVEDDEGGDGLLAALADELVWEGDDD 186
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BLAST of mRNA_Ecto-sp13_S_contig15395.4041.1 vs. uniprot
Match: D7FZG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG5_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.020e-36
Identity = 88/98 (89.80%), Postives = 90/98 (91.84%), Query Frame = 3 
Query:  696 AHGESEVEDDEGGDGLLAALADELVWEGDDDXXXXXXXXXXXX---AGMEGLDLESLGISMMDDEDAEEVQEQLRREWGTVSVQNEQKEYEIDTAELQ 980
            AHGESEVED+EGGDGLLAALADELVWEGD D   XXXXXXXXX   AGMEGLDLESLGIS+MDDEDAEEVQEQLRREWGT SVQNEQKEYEIDTAELQ
Sbjct:   26 AHGESEVEDEEGGDGLLAALADELVWEGDGDEGEXXXXXXXXXXXXAGMEGLDLESLGISIMDDEDAEEVQEQLRREWGTASVQNEQKEYEIDTAELQ 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15395.4041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1R5_9PHAE7.390e-3868.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZG5_ECTSI3.020e-3689.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15395contigEcto-sp13_S_contig15395:2687..4167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score141.7
Seed ortholog evalue4.5e-31
Seed eggNOG ortholog2880.D7FZG5
Preferred nameYBEY
Model size980
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons2
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGs2R6QZ@2759,COG0319@1
Ec32 ortholog descriptionEndoribonuclease YbeY
Ec32 orthologEc-19_003220.1
Cds size744
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.34416-UTR-Ecto-sp13_S_contig15395:2686..29221681462818.34416-UTR-Ecto-sp13_S_contig15395:2686..2922Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15395 2687..2922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.3554208-CDS-Ecto-sp13_S_contig15395:2922..35581681462818.3554208-CDS-Ecto-sp13_S_contig15395:2922..3558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15395 2923..3558 +
1681462818.3663843-CDS-Ecto-sp13_S_contig15395:4059..41671681462818.3663843-CDS-Ecto-sp13_S_contig15395:4059..4167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15395 4060..4167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15395.4041.1prot_Ecto-sp13_S_contig15395.4041.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15395 2923..4167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15395.4041.1

>prot_Ecto-sp13_S_contig15395.4041.1 ID=prot_Ecto-sp13_S_contig15395.4041.1|Name=mRNA_Ecto-sp13_S_contig15395.4041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
MQQARSLVFGLRPPPCRASSVLSFTQPARPWISQPASALHNCSRHHGGGG
GTSSSRQAPRAADPVSRNGAIMSSTDSSSSSRRRRKRAGWGMVLEGPGAF
SVAARRGRPAAASTVPRRLLGHHEEQSMFLLPPSRRSMSTEAGGGGGGVV
EGSAHGESEVEDDEGGDGLLAALADELVWEGDDDEGEEDDAEEEEEAGME
GLDLESLGISMMDDEDAEEVQEQLRREWGTVSVQNEQKEYEIDTAELQ
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mRNA from alignment at Ecto-sp13_S_contig15395:2687..4167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15395.4041.1 ID=mRNA_Ecto-sp13_S_contig15395.4041.1|Name=mRNA_Ecto-sp13_S_contig15395.4041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15395:2687..4167+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGAACATATAGCAGTTCAGACACACAGCTTCTTCCCCAGCGCGGCCAC
CTGGCATCTGTTGCTATCGCGCGTATCTTGCCAACCGTGCCGAGAATCAC
GAGTGGACGTCGAACAAAAGTCGAGAACCGATTTTCCGTCCCTAGACGGT
CCGCTACACAACCGCACTGCAACCGTCCGATTTCCCCCGTTTCCGTAACA
ACACGATCGGCATCAACACCAAGCAAGCTCGTCGCGATGCAGCAGGCCCG
ATCGCTCGTCTTCGGGCTTCGACCGCCACCTTGCCGTGCCAGCAGCGTGC
TCTCCTTCACCCAGCCCGCCCGGCCTTGGATCTCCCAGCCGGCGTCTGCC
CTGCACAACTGTAGTAGGCATCACGGCGGCGGCGGCGGAACATCGTCATC
AAGGCAGGCACCAAGGGCAGCAGATCCTGTCTCGCGCAACGGCGCCATCA
TGAGCAGCACGGACAGCAGCAGCAGCAGCAGAAGAAGAAGAAAGAGAGCG
GGGTGGGGAATGGTACTGGAAGGGCCGGGTGCTTTCTCGGTAGCGGCGAG
GAGAGGTCGGCCTGCTGCTGCTTCTACTGTGCCCCGCCGGCTGCTTGGGC
ATCATGAAGAACAAAGCATGTTCCTGCTGCCTCCCTCCCGGAGATCCATG
TCCACTGAAGCGGGCGGCGGCGGCGGCGGGGTGGTAGAGGGAAGCGCTCA
CGGCGAGAGCGAGGTAGAAGACGACGAGGGCGGAGACGGGCTTCTTGCCG
CGCTGGCGGACGAGCTAGTGTGGGAAGGGGATGACGACGAAGGGGAGGAA
GATGATGCGGAGGAGGAGGAGGAAGCTGGGATGGAGGGATTGGATCTCGA
GAGCTTAGGGATATCCATGATGGTCAGTTCGCGCTCTCTGTTCGAGGTGT
TAGGAATTTGCACATCCAATCAAAGACAGACTGCCCGCTCAAGATATAAC
CACAGCAGCAGTCGAAGGGGATGGTTTGAAGTTCTTTTCAGTGAATGTTC
GTATTGTTTTGGAGCACGGACTCCGGCTGTTGGTATGCACGTGTGCGGCA
CACCGAGTGCAAAAGACACGGGGTTCGTTTACGCAAGAGCCGAGATGGGT
GCCTGAGATCTCCCCCACGATGCGAAGGAAACGCTACCAAACTTTGAGCA
ACGCTACCAAGCATCGAGTAGCCGCCCTGTTCCCTTGAGGGCGGCGCGCC
ATCGTGTGTCCTCGTACACATGACATCTAAACACCGCCGTGCGCGCCGAA
CACTCCTAAGCAGCTGAATGCCTCCACCTGAGAGAGAGAGAGAGAGCATG
GGAACCATTCGTCAGAACGTTCTTTAGCGTGCGTGTCTTCCCCTCGGCTC
TCGGGTGTTTTTTTTCGGGCCAGGACGATGAGGATGCGGAGGAAGTGCAG
GAGCAGCTGCGGCGAGAGTGGGGGACAGTCTCGGTGCAAAACGAGCAGAA
GGAATACGAAATCGACACAGCCGAGCTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15395:2687..4167+

>mRNA_Ecto-sp13_S_contig15395.4041.1 ID=mRNA_Ecto-sp13_S_contig15395.4041.1|Name=mRNA_Ecto-sp13_S_contig15395.4041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15395:2687..4167+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCAGGCCCGATCGCTCGTCTTCGGGCTTCGACCGCCACCTTGCCG
TGCCAGCAGCGTGCTCTCCTTCACCCAGCCCGCCCGGCCTTGGATCTCCC
AGCCGGCGTCTGCCCTGCACAACTGTAGTAGGCATCACGGCGGCGGCGGC
GGAACATCGTCATCAAGGCAGGCACCAAGGGCAGCAGATCCTGTCTCGCG
CAACGGCGCCATCATGAGCAGCACGGACAGCAGCAGCAGCAGCAGAAGAA
GAAGAAAGAGAGCGGGGTGGGGAATGGTACTGGAAGGGCCGGGTGCTTTC
TCGGTAGCGGCGAGGAGAGGTCGGCCTGCTGCTGCTTCTACTGTGCCCCG
CCGGCTGCTTGGGCATCATGAAGAACAAAGCATGTTCCTGCTGCCTCCCT
CCCGGAGATCCATGTCCACTGAAGCGGGCGGCGGCGGCGGCGGGGTGGTA
GAGGGAAGCGCTCACGGCGAGAGCGAGGTAGAAGACGACGAGGGCGGAGA
CGGGCTTCTTGCCGCGCTGGCGGACGAGCTAGTGTGGGAAGGGGATGACG
ACGAAGGGGAGGAAGATGATGCGGAGGAGGAGGAGGAAGCTGGGATGGAG
GGATTGGATCTCGAGAGCTTAGGGATATCCATGATGGACGATGAGGATGC
GGAGGAAGTGCAGGAGCAGCTGCGGCGAGAGTGGGGGACAGTCTCGGTGC
AAAACGAGCAGAAGGAATACGAAATCGACACAGCCGAGCTGCAG
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