mRNA_Ecto-sp13_S_contig15391.4039.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15391.4039.1
Unique NamemRNA_Ecto-sp13_S_contig15391.4039.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: D7FLG2_ECTSI (ATP_bind_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.670e-41
Identity = 70/85 (82.35%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQRCHVWWREPVCQIVLLLRLCREVFCRDGHVGRFVCLLVGGETKSI 255
            MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ        PVC +VLLLRL RE   RDGHVGRFVCLLVGG+TKSI
Sbjct:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQG-------PVCHLVLLLRLGREGLRRDGHVGRFVCLLVGGKTKSI 78
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: A0A6H5L116_9PHAE (ATP_bind_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L116_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.970e-31
Identity = 61/85 (71.76%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQRCHVWWREPVCQIVLLLRLCREVFCRDGHVGRFVCLLVGGETKSI 255
            MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ                      VF RDGHVGRFVCLLVGG+TKSI
Sbjct:   93 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ----------------------VFSRDGHVGRFVCLLVGGKTKSI 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 4.300e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 120
            MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ
Sbjct:  979 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 1018
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: A0A5D6Y3W1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3W1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-16
Identity = 43/75 (57.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ----RCHVWWREPVCQIVLLLRLCREV----FCRD 201
            MKRGLLY+CCR QG+NKLVLAQHLDDLAESF+MSA+HNGQ    +   W      +++  L   REV    F RD
Sbjct:  869 MKRGLLYSCCRAQGFNKLVLAQHLDDLAESFLMSAMHNGQLRTMKAKYWNETKDVEVLRPLAYTREVELKKFARD 943
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: K3WC28_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC28_GLOUD)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-16
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ----RCHVWWREPVCQIVLLLRLCRE 186
            MKRGLLY CCR QGYNKLVLAQHLDDLAESF+MSA+HNGQ    +   W  +   +I+  L   RE
Sbjct:  879 MKRGLLYTCCRTQGYNKLVLAQHLDDLAESFLMSAMHNGQLRTMKAKYWNEQKDIEILRPLAYTRE 944
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: UPI001DB1BACB (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001DB1BACB)

HSP 1 Score: 82.4 bits (202), Expect = 1.800e-16
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ----RCHVWWREPVCQIVLLLRLCREV 189
            MKRGLLY CCR++GYNKLVLAQHLDDLAESF MSA+HNGQ    +   W  +   +++  L   REV
Sbjct:  850 MKRGLLYTCCRKEGYNKLVLAQHLDDLAESFFMSAMHNGQLRTMKAKYWNNQRDVEVLRPLAYVREV 916
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: A0A3F2RX29_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RX29_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.810e-16
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ----RCHVWWREPVCQIVLLLRLCREV 189
            MKRGLLY CCR++GYNKLVLAQHLDDLAESF MSA+HNGQ    +   W  +   +++  L   REV
Sbjct: 1338 MKRGLLYTCCRKEGYNKLVLAQHLDDLAESFFMSAMHNGQLRTMKAKYWNNQRDVEVLRPLAYVREV 1404
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: A0A2D4BKU8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKU8_PYTIN)

HSP 1 Score: 80.1 bits (196), Expect = 1.160e-15
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ----RCHVWWREPVCQIVLLLRLCRE 186
            MKRGLLY CCR++G+NKLVLAQHLDDLAESF MSA+HNGQ    +   W  E   +I+  L   RE
Sbjct:  846 MKRGLLYTCCRQKGFNKLVLAQHLDDLAESFFMSAIHNGQLRTMKAKYWNDERDVEILRPLAYVRE 911
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: A0A1V9ZU97_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU97_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.960e-15
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ----RCHVWWREPVCQIVLLLRLCREVFCRD 201
            MKRGLLY CCR+ GYNKLVLAQHLDDLAESF MSA++NGQ    +   W      +I+  L   RE   +D
Sbjct:  800 MKRGLLYTCCRKNGYNKLVLAQHLDDLAESFFMSAMYNGQVRTMKAKYWNDTKDVEIIRPLAYVREEALKD 870
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Match: A0A484EB29_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB29_BRELC)

HSP 1 Score: 79.0 bits (193), Expect = 2.960e-15
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ----RCHVWWREPVCQIVLLLRLCREV 189
            MKRG+LY CCR+ GYNKLVLAQHLDDLAESF MSA+HNGQ    +   W  +   Q++  L   RE+
Sbjct:  861 MKRGVLYTCCRQFGYNKLVLAQHLDDLAESFFMSAMHNGQLRTMKAKYWNDQHDVQVLRPLVYVREI 927
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15391.4039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLG2_ECTSI2.670e-4182.35ATP_bind_3 domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5L116_9PHAE1.970e-3171.76ATP_bind_3 domain-containing protein n=1 Tax=Ectoc... [more]
D7FR81_ECTSI4.300e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6Y3W1_9STRA1.320e-1657.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WC28_GLOUD1.320e-1662.12Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI001DB1BACB1.800e-1659.70Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3F2RX29_9STRA1.810e-1659.70Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A2D4BKU8_PYTIN1.160e-1560.61Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9ZU97_9STRA2.960e-1556.34Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A484EB29_BRELC2.960e-1558.21Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15391contigEcto-sp13_S_contig15391:2477..2751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score89.0
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D7FR81
Model size255
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.tRNA thio-modification
EggNOG OGsCOG0037@1,KOG2840@2759
Ec32 ortholog descriptiontRNA(Ile)-lysidine/2-thiocytidine synthase
Ec32 orthologEc-00_002670.1
Cds size255
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.2701104-CDS-Ecto-sp13_S_contig15391:2476..25961681462818.2701104-CDS-Ecto-sp13_S_contig15391:2476..2596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15391 2477..2596 +
1681462818.280803-CDS-Ecto-sp13_S_contig15391:2616..27511681462818.280803-CDS-Ecto-sp13_S_contig15391:2616..2751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15391 2617..2751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15391.4039.1prot_Ecto-sp13_S_contig15391.4039.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15391 2477..2751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15391.4039.1

>prot_Ecto-sp13_S_contig15391.4039.1 ID=prot_Ecto-sp13_S_contig15391.4039.1|Name=mRNA_Ecto-sp13_S_contig15391.4039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQRCHVWWREPV
CQIVLLLRLCREVFCRDGHVGRFVCLLVGGETKSI
back to top

mRNA from alignment at Ecto-sp13_S_contig15391:2477..2751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15391.4039.1 ID=mRNA_Ecto-sp13_S_contig15391.4039.1|Name=mRNA_Ecto-sp13_S_contig15391.4039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15391:2477..2751+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCGGGGCCTGCTGTACGCGTGCTGCCGGGAGCAGGGCTACAACAA
GCTCGTCCTCGCCCAACACCTCGACGACCTCGCAGAGAGCTTCATCATGT
CCGCCCTGCACAATGGCCAGGTACTGTCCTAGCGCGGAAGCGATGTCATG
TGTGGTGGCGGGAACCAGTCTGCCAGATAGTACTGCTACTACGTCTTTGC
CGTGAGGTGTTTTGTCGAGACGGGCATGTCGGTCGCTTTGTCTGCTTGCT
TGTGGGAGGAGAGACGAAGTCAATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15391:2477..2751+

>mRNA_Ecto-sp13_S_contig15391.4039.1 ID=mRNA_Ecto-sp13_S_contig15391.4039.1|Name=mRNA_Ecto-sp13_S_contig15391.4039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15391:2477..2751+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCGGGGCCTGCTGTACGCGTGCTGCCGGGAGCAGGGCTACAACAA
GCTCGTCCTCGCCCAACACCTCGACGACCTCGCAGAGAGCTTCATCATGT
CCGCCCTGCACAATGGCCAGCGATGTCATGTGTGGTGGCGGGAACCAGTC
TGCCAGATAGTACTGCTACTACGTCTTTGCCGTGAGGTGTTTTGTCGAGA
CGGGCATGTCGGTCGCTTTGTCTGCTTGCTTGTGGGAGGAGAGACGAAGT
CAATC
back to top