mRNA_Ecto-sp13_S_contig15391.4038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15391.4038.1
Unique NamemRNA_Ecto-sp13_S_contig15391.4038.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: A0A6H5L116_9PHAE (ATP_bind_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L116_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.480e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR
Sbjct:    7 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.020e-48
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR
Sbjct:  893 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 978
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: I2CPH6_NANGC (Pp-loop domain protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH6_NANGC)

HSP 1 Score: 144 bits (362), Expect = 2.560e-40
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            RLCLGLSGGKDS+TLLHVLLHLQK+API F VACATVDPQT SFDPSPLIPY++ LGV  HY+S PII QAK  +QGDSLC+FC+R
Sbjct:   35 RLCLGLSGGKDSLTLLHVLLHLQKKAPIRFSVACATVDPQTSSFDPSPLIPYMKALGVPYHYLSHPIIAQAKAQLQGDSLCSFCSR 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: A0A812RBY0_SYMMI (TtcA protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RBY0_SYMMI)

HSP 1 Score: 141 bits (356), Expect = 4.730e-38
Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            RL LGLSGGKDS+TLLH+LLHLQ++AP+ F +ACATVDPQT SFDPSPLIPY++ LGV  HY+S PI+E AK+ MQGDSLCAFCAR
Sbjct:  353 RLLLGLSGGKDSLTLLHILLHLQRKAPVNFTIACATVDPQTESFDPSPLIPYMQSLGVTYHYLSEPIVELAKSKMQGDSLCAFCAR 438
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: A0A7S3XUF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUF4_HETAK)

HSP 1 Score: 135 bits (339), Expect = 3.610e-37
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            RLCLGLSGGKDS+ LLHVLL LQ++API FE+ACATVDP T SFDP PLIPYL  LGV  HY+  PIIE+AKT++QGDS+C+FC+R
Sbjct:   86 RLCLGLSGGKDSLALLHVLLALQRKAPIRFELACATVDPMTASFDPRPLIPYLASLGVTYHYLEEPIIERAKTALQGDSICSFCSR 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: A0A4R3K081_9PROT (tRNA 2-thiocytidine biosynthesis protein TtcA n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A4R3K081_9PROT)

HSP 1 Score: 129 bits (324), Expect = 2.030e-35
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            R+ LGLSGGKDS++LLHVLLHLQK+API FE+A  TVDPQ+P FDPSPL PYLE+LGV+  Y S PI+EQA+  MQGDS CA+C+R
Sbjct:   33 RVLLGLSGGKDSLSLLHVLLHLQKKAPIKFELAACTVDPQSPDFDPSPLKPYLEQLGVRYFYDSQPIVEQAQAHMQGDSFCAYCSR 118
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: A0A7S3MGR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGR1_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.130e-35
Identity = 62/86 (72.09%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            RL LGLSGGKDS+ LLH+LL +QKRAP+ FE+ACATVDPQT SFDPSPLIPY++ LG+  HY+S PI+E AK+ +QGDSLCAFC+R
Sbjct:  859 RLLLGLSGGKDSLALLHILLAVQKRAPVKFEIACATVDPQTDSFDPSPLIPYVQSLGITYHYLSEPIVELAKSKLQGDSLCAFCSR 944
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: A0A6F8V971_9PROT (ATP_bind_3 domain-containing protein n=2 Tax=Nitrosomonadales TaxID=32003 RepID=A0A6F8V971_9PROT)

HSP 1 Score: 124 bits (312), Expect = 1.200e-33
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            ++ LGLSGGKDS++LL VLLHLQK+API FE+A  TVDPQ+P FDPSPL  YL  LGV   Y S PI+EQAKTSMQGDS CAFC+R
Sbjct:   31 KVLLGLSGGKDSLSLLQVLLHLQKKAPIRFELAACTVDPQSPDFDPSPLKAYLAELGVPYFYESQPIVEQAKTSMQGDSFCAFCSR 116
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: A0A258TUJ9_9PROT (tRNA 2-thiocytidine(32) synthetase TtcA n=1 Tax=Hydrogenophilales bacterium 28-61-23 TaxID=1970530 RepID=A0A258TUJ9_9PROT)

HSP 1 Score: 123 bits (308), Expect = 3.380e-33
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            R+ LGLSGGKDS++LLH+LLHLQK+API FE+AC TVDPQ+P FDPSPL  YL  LGV   Y S PI+EQA++ M+GDS CA+C+R
Sbjct:    7 RVLLGLSGGKDSLSLLHILLHLQKKAPIKFELACCTVDPQSPEFDPSPLKAYLADLGVPYFYESQPILEQAESHMKGDSFCAYCSR 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Match: A0A7S2RBR9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RBR9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.150e-33
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR 258
            RL LGLSGGKDS+TLLH+LLH QKRAPI FEV+  T+DP   SFDPS LIPY++ LGV+ H++ +PI EQAKTSMQG S+CAFCAR
Sbjct:  764 RLLLGLSGGKDSLTLLHLLLHFQKRAPIKFEVSACTIDPLIESFDPSSLIPYMKSLGVEYHFVQTPIFEQAKTSMQGSSICAFCAR 849
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15391.4038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L116_9PHAE2.480e-53100.00ATP_bind_3 domain-containing protein n=1 Tax=Ectoc... [more]
D7FR81_ECTSI1.020e-48100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I2CPH6_NANGC2.560e-4079.07Pp-loop domain protein (Fragment) n=1 Tax=Nannochl... [more]
A0A812RBY0_SYMMI4.730e-3875.58TtcA protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3XUF4_HETAK3.610e-3773.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4R3K081_9PROT2.030e-3570.93tRNA 2-thiocytidine biosynthesis protein TtcA n=2 ... [more]
A0A7S3MGR1_9STRA3.130e-3572.09Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6F8V971_9PROT1.200e-3370.93ATP_bind_3 domain-containing protein n=2 Tax=Nitro... [more]
A0A258TUJ9_9PROT3.380e-3367.44tRNA 2-thiocytidine(32) synthetase TtcA n=1 Tax=Hy... [more]
A0A7S2RBR9_9STRA6.150e-3370.93Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15391contigEcto-sp13_S_contig15391:2..771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score175.3
Seed ortholog evalue1.3e-41
Seed eggNOG ortholog2880.D7FR81
Model size258
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.tRNA thio-modification
EggNOG OGsCOG0037@1,KOG2840@2759
Ec32 ortholog descriptionAminotransferase class V domain
Ec32 orthologEc-08_005030.1
Cds size258
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.2281327-CDS-Ecto-sp13_S_contig15391:1..871681462818.2281327-CDS-Ecto-sp13_S_contig15391:1..87Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15391 2..87 +
1681462818.2378075-CDS-Ecto-sp13_S_contig15391:599..7711681462818.2378075-CDS-Ecto-sp13_S_contig15391:599..771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15391 600..771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15391.4038.1prot_Ecto-sp13_S_contig15391.4038.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15391 2..771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15391.4038.1

>prot_Ecto-sp13_S_contig15391.4038.1 ID=prot_Ecto-sp13_S_contig15391.4038.1|Name=mRNA_Ecto-sp13_S_contig15391.4038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
RLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSPLI
PYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCAR
back to top

mRNA from alignment at Ecto-sp13_S_contig15391:2..771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15391.4038.1 ID=mRNA_Ecto-sp13_S_contig15391.4038.1|Name=mRNA_Ecto-sp13_S_contig15391.4038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=770bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15391:2..771+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCTCTGCCTCGGTCTCTCGGGGGGAAAGGACTCCATGACCCTGCTGCA
CGTCCTGCTCCACCTCCAGAAGCGGGCCCCCATCACGTGAGAGACCAACC
GAGACACGGGCCTTGCTCCCACCGCATCATCTTTCCCGTTTACCATGTTT
CACCGCATTTCACCAGTGAGCGTTGTTGTCGTGGACGGCAAGCTTGAGAC
ATCTCTCAGGCGATGGAACCTGTGCACGCATGCAGCATTTTTTTCCCTCG
CTGTGTTGCCGCTCGTGGACTCGGCACAGTTTAACATGTTTGATGCTGCA
GGCATGTTGAATGTCCGTCTCGCCCACCGCGCGGGTGAGACAAAAGGAAT
GCATTTTCGCACACCATGAAAATTGATGATTGATGCGCGTAGGTTGTGCC
ATCCGGGAGCAGGACCTCGATCATGCTATAGAGGCATTGGTGTAAGCCTC
GCTTCCACCGGGTCACGTGTCGTGTTGTTGACGAAGCAATCATCTAACGC
CTGCCTGTGTAGCATGTATACGTGCTATCGCGAGCTGCTCGTATTAACTG
TCGTTCCTCGTTCACACCACTGCTTTCATGCTCTTCGCCTTTTTACAGGT
TTGAGGTGGCGTGCGCTACGGTGGACCCACAGACTCCGTCCTTCGACCCA
TCCCCCCTCATCCCCTACCTCGAACGCCTCGGGGTGAAGCTGCACTACAT
CAGCTCGCCCATCATCGAGCAGGCCAAGACGTCCATGCAAGGAGACAGCC
TGTGTGCCTTCTGCGCGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15391:2..771+

>mRNA_Ecto-sp13_S_contig15391.4038.1 ID=mRNA_Ecto-sp13_S_contig15391.4038.1|Name=mRNA_Ecto-sp13_S_contig15391.4038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15391:2..771+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCTCTGCCTCGGTCTCTCGGGGGGAAAGGACTCCATGACCCTGCTGCA
CGTCCTGCTCCACCTCCAGAAGCGGGCCCCCATCACGTTTGAGGTGGCGT
GCGCTACGGTGGACCCACAGACTCCGTCCTTCGACCCATCCCCCCTCATC
CCCTACCTCGAACGCCTCGGGGTGAAGCTGCACTACATCAGCTCGCCCAT
CATCGAGCAGGCCAAGACGTCCATGCAAGGAGACAGCCTGTGTGCCTTCT
GCGCGAGG
back to top