mRNA_Ecto-sp13_S_contig15372.4032.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15372.4032.1
Unique NamemRNA_Ecto-sp13_S_contig15372.4032.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15372.4032.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 9.640e-114
Identity = 228/250 (91.20%), Postives = 229/250 (91.60%), Query Frame = 1 
Query:   64 QAANYEAQLTALPKTEGDGDETAGAVVATSGGAETEVARLKSTIEDLESSRKTTARRLRDIMKKCSQNEERFLAAVETEKARADRFEEMLEDSRRERDAECERLQHNIDSQKEQLDVKVATVKHLWEKVAAIRRVKAVGSEDLKAHLDEAVSARDSLSRLAEDQQEQIDRLRRRAKRKEEEITKTVLARLQAQEASGSSXXXXXXXXXXXXXXXXXXXXX----RESLDSAAGTTRGASAALRSQLADIK 801
            QAANYEAQLTALPKTE DGDETAGAVVA SGGAETEVARLKS IEDLESSRK TARRLRDIMKKCSQNEERFLAAVETEKARADRFEEMLED RRERDAECERLQHNIDSQKEQLDVKVATVKHLWEKVAAIRRVKAVGSEDLKAHLDEAVSARDSLSRLAEDQQEQIDRLRRRAKRKEEEITKTVLARLQAQEASGSS            XXXXXXXXX    R+SLDSAAGTTRGASAALRSQLADIK
Sbjct: 2138 QAANYEAQLTALPKTEEDGDETAGAVVAASGGAETEVARLKSMIEDLESSRKMTARRLRDIMKKCSQNEERFLAAVETEKARADRFEEMLEDCRRERDAECERLQHNIDSQKEQLDVKVATVKHLWEKVAAIRRVKAVGSEDLKAHLDEAVSARDSLSRLAEDQQEQIDRLRRRAKRKEEEITKTVLARLQAQEASGSSVIDDDEMSLGDAXXXXXXXXXXXXXRDSLDSAAGTTRGASAALRSQLADIK 2387
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15372.4032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNU8_9PHAE9.640e-11491.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15372contigEcto-sp13_S_contig15372:785..4173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size801
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_004170.1
Cds size792
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15372.4032.1prot_Ecto-sp13_S_contig15372.4032.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15372 785..4164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.7125044-CDS-Ecto-sp13_S_contig15372:784..9701681462817.7125044-CDS-Ecto-sp13_S_contig15372:784..970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15372 785..970 -
1681462817.7213113-CDS-Ecto-sp13_S_contig15372:1266..13861681462817.7213113-CDS-Ecto-sp13_S_contig15372:1266..1386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15372 1267..1386 -
1681462817.7300978-CDS-Ecto-sp13_S_contig15372:1709..17931681462817.7300978-CDS-Ecto-sp13_S_contig15372:1709..1793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15372 1710..1793 -
1681462817.740098-CDS-Ecto-sp13_S_contig15372:2227..23541681462817.740098-CDS-Ecto-sp13_S_contig15372:2227..2354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15372 2228..2354 -
1681462817.750131-CDS-Ecto-sp13_S_contig15372:2814..28931681462817.750131-CDS-Ecto-sp13_S_contig15372:2814..2893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15372 2815..2893 -
1681462817.7596087-CDS-Ecto-sp13_S_contig15372:3337..34761681462817.7596087-CDS-Ecto-sp13_S_contig15372:3337..3476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15372 3338..3476 -
1681462817.7689738-CDS-Ecto-sp13_S_contig15372:4107..41641681462817.7689738-CDS-Ecto-sp13_S_contig15372:4107..4164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15372 4108..4164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.778671-UTR-Ecto-sp13_S_contig15372:4164..41731681462817.778671-UTR-Ecto-sp13_S_contig15372:4164..4173Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15372 4165..4173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15372.4032.1

>prot_Ecto-sp13_S_contig15372.4032.1 ID=prot_Ecto-sp13_S_contig15372.4032.1|Name=mRNA_Ecto-sp13_S_contig15372.4032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
MEEEKEAICDDYEGRLQQQAANYEAQLTALPKTEGDGDETAGAVVATSGG
AETEVARLKSTIEDLESSRKTTARRLRDIMKKCSQNEERFLAAVETEKAR
ADRFEEMLEDSRRERDAECERLQHNIDSQKEQLDVKVATVKHLWEKVAAI
RRVKAVGSEDLKAHLDEAVSARDSLSRLAEDQQEQIDRLRRRAKRKEEEI
TKTVLARLQAQEASGSSVIDDDEMSLGGAPRGDDGGGGRESLDSAAGTTR
GASAALRSQLADIK
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mRNA from alignment at Ecto-sp13_S_contig15372:785..4173-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15372.4032.1 ID=mRNA_Ecto-sp13_S_contig15372.4032.1|Name=mRNA_Ecto-sp13_S_contig15372.4032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15372:785..4173- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCGTCAGATGGAGGAGGAGAAGGAGGCTATCTGTGACGACTACGAGGG
AAGGCTGCAGCAGCAGGTGTGTGTGTGTGCGTGTGTTGCGTAATGCTCGT
GGTTTGCCAAGGCAAGCGCGTCAATCGCTGCAAGCGCGGTGAAGCGTTTT
CATCGGTTTTGACTTTTTTTTCGACGTTACGGGATGTGTATATATATATT
TTTTTTGGTTCACGATCAGGCTGCGTACGGCATGGTGGCCGAGGACATCT
TTTGCGGCGGTTGCCCTTGCCTCAGCCTCGTTCTGCACTTGATTGGATGT
TCTATTCTGTGGCGATGCCCTATGCGACTGGGTTTTGGTACTGGATGCTT
TTTTGCGGGGGTTCGGTTGCAGGTAGAGGCCTGCAGCAGCACCGTAGCAG
CAGCAGCAGATATCCTTGTCCCAACTAATATTTTTCGCTGCTTTCCGTGC
GCACCGGAGATTGTAAATTTTCCGTTTGTCCCACAGGGCGCAACCCGTGT
ACATGTTCGTGGAACACGGCACAAGTTGGTTTGGCATCACGTGTATCCCG
TACAGGTGTCTAGGTTCAGTTTGTCGTAATGAGCTTGCCCGTTTCGTTGT
TCAACTGCAAATCTGTCTGTTGGGACATATGCCCACTCCCGAGCTTACAC
TTGAAACTCGGCTCGTGTGCCATGTCGATGTTTCTTTGTTCAACTAGGCT
GCCAACTACGAAGCTCAGCTGACGGCCCTGCCCAAGACGGAGGGGGACGG
GGACGAGACGGCGGGGGCGGTGGTGGCCACATCTGGTGGTGCTGAGACTG
AAGTGGCGCGGCTCAAATCCACGATCGAAGACCTGGGTACGTAGACCACA
GATTATTTATATTTTTCATAGTCTTGGCGGGCTACAGTAGTTCGGCTACG
AATTACGGTTGGTTTTTGAAGAAGGGTGGCATTCCGTCCTGAGTTATTCG
GGAAGGAAGTTGTTCTCTGGGCCTACCGTACATATTCGTGATGTGTATTT
ACATGTTCATGATGTGTATTTTACCTTTCACATTACACTGTTCCATCTCT
CTGTCTCTGTCTCTGTCTCTGTGTGTTTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTGTCTCTCTGCGTCTCTCTCTCTCTCTTCGTCTCTAT
CTGTCGCCCTCTCCCTCCCTCCTCCCCTCCCACCCATCTACCTCGTATTT
CACTCAATCTCTTTCACGCGCTCTTCGCTCTTGTGCTGTACTCTCTGTGT
TTGTTCTCGCTTGTTTTTGCTATTTGCCAGAGTCGAGCAGGAAGACGACG
GCCAGGAGGCTCCGCGATATCATGAAGAAGTGCTCGCAGAACGAGGAACG
TTTCCTGGCGTGAGTTGGTGCATGTGCCCCCTTCCCTTGACGTAGATATA
TTGTATATGTATTCCATCACGCACACGGCGTTGCCACTTTGCTTCTTCGG
TGGCAGCAGAGGTTGCGTGGCGGGTTTTTCCATGGCAGAAAAAAGCACAA
CGGAGACATTTCAAGCCTGGTACGCGCAGCGTCTCTTCTTCCTGTAAGAA
CAAGGTCCTACACTTGGAGTGAAATATCTACGTAGCCAACGGCAAGGTTT
TTTGATGGTGTCCCTCGTCTGGTCGTGTTGCTTCGGTACCGCACAAGCTG
TGGCGAGACTTGGACTGCCGTGTGCGTGTTTGCGACCACATGGGGTCTGA
TTGACGAAGGCCATCTATCTGGCTGTGCTCTTGCTCACGTTCTTCTGGCG
TGTCGTGGTTGCTGCTGCATGTCTCCGGCCACGCTTTTTTTTTTTTGAAA
ACGTTTTGGACGTTGGCAGCGCCGTGGAGACGGAGAAGGCCAGGGCCGAT
CGTTTCGAGGAGATGCTGGAGGACTCCAGGAGGGAGAGGGACGCCGAGTG
CGAGCGCTTGCAGCACAACATCGACAGCCAGAAGGAGCAGCTCGACGTGA
GTGTTTGCCGTTATCATTGATCTCGCCGTGTCCACGTGTAGGCCTTCGAA
AAATTATTCACGCTTGGTGGTGTGGTTTTTCTCGGCAGTTCGCAAGTTCT
GTATCGGTAGCCGGAAAGGAGCGTTGACGCGAGCTGCCTGAGCTGCCTAT
TCTTGTTTGGTTGCTCTTGTCTCTCTCTCTTTTTGTCGTGTGTATGCCGG
CCGTACGCGAACATCTATTCCATATCTTGCTTGGTTGACCGACTCGTGAC
ATGGTGCGAGTTTTGATGTTAGTATGATTCGGGGCGGCGTAGTGAGCAGG
GGAGGTTGCGGACAAATTATGTAGCCGTCAGGCGGCAATAGGCTCTCTGT
TGCATCCTTACCTTGTTCGCCGTTTTTCTTTCCCACCCTTCGATATGCTG
TTGGAATCCCTCTCCATCTCGCTTGGTCAGGTTAAGGTGGCGACTGTCAA
GCATCTCTGGGAGAAAGTGGCAGCCATTCGCCGCGTTAAGGCGGTCGGCA
GCGAGGATCTCAAGGTACCTTGACCTTGCCGTACGGTACAGAGCTCTGCT
CGTTGTAAGCTGAATGGGTTGCAACGGACTGTCAACAGTTTCAATTACAA
GCATTTGTTCCTACTGCGGCGGGCGAGTGTTTCTGGCCTGCCGAGTTTGT
GTGTGTGTGTGTGTTTTCCGCCGCTGCTCGCGCTCGTCCAAACATCTCCT
CGCTCTCGTCTTCCATGTATGCGTACACTACCGTGGCGACTTTTACTGTT
TCGCCGCCATCAACATTCATCCGTGCGTGTATGTCTGTGCGCATTGCCTG
CCGTTGCTGCTGCTGCTGTTGTTGTTTTCGCCCATAGGCTCATCTTGACG
AGGCGGTATCCGCCCGCGACAGCTTGTCGAGGCTGGCGGAGGACCAGCAG
GAGCAGATCGATAGGCTCAGGAGGAGAGCCAAGCGGAAGGAGGAGGAGAT
CACTAAGGTTAACGAATTGACCGACTACATAAACGTGCAGTGTTTTTTTT
GTACTTTTGTATAATTGTGTTGCAATGGGTGTGCGTACGCACCAAACCTT
TCACAAGAGTATTTCCATGAATTTTTATACTCGCGCGGTTTTTACGCATT
CCCTACTGTTGAGACCCCTCCCTTGACTTGCGTATCCTGCCTCCACACTC
CTCTTTTCCCTTGAGCGCTGCTTTCCTGCTACTAACATAGTGTATCTGCG
CTATCTTGTATGTGTGTACTTGTTTTTTTTGTTTTTTGGGTGCTTGTTTT
CAGACTGTCCTTGCCAGACTGCAGGCGCAAGAGGCGTCGGGTTCGTCCGT
CATCGATGACGATGAGATGAGCCTCGGCGGTGCCCCTAGGGGAGACGACG
GCGGCGGTGGCAGGGAGTCGCTCGACAGCGCAGCGGGTACGACGAGGGGA
GCCAGCGCGGCGCTCAGGTCTCAGCTCGCCGACATCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15372:785..4173-

>mRNA_Ecto-sp13_S_contig15372.4032.1 ID=mRNA_Ecto-sp13_S_contig15372.4032.1|Name=mRNA_Ecto-sp13_S_contig15372.4032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15372:785..4173- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGGAGAAGGAGGCTATCTGTGACGACTACGAGGGAAGGCTGCA
GCAGCAGGCTGCCAACTACGAAGCTCAGCTGACGGCCCTGCCCAAGACGG
AGGGGGACGGGGACGAGACGGCGGGGGCGGTGGTGGCCACATCTGGTGGT
GCTGAGACTGAAGTGGCGCGGCTCAAATCCACGATCGAAGACCTGGAGTC
GAGCAGGAAGACGACGGCCAGGAGGCTCCGCGATATCATGAAGAAGTGCT
CGCAGAACGAGGAACGTTTCCTGGCCGCCGTGGAGACGGAGAAGGCCAGG
GCCGATCGTTTCGAGGAGATGCTGGAGGACTCCAGGAGGGAGAGGGACGC
CGAGTGCGAGCGCTTGCAGCACAACATCGACAGCCAGAAGGAGCAGCTCG
ACGTTAAGGTGGCGACTGTCAAGCATCTCTGGGAGAAAGTGGCAGCCATT
CGCCGCGTTAAGGCGGTCGGCAGCGAGGATCTCAAGGCTCATCTTGACGA
GGCGGTATCCGCCCGCGACAGCTTGTCGAGGCTGGCGGAGGACCAGCAGG
AGCAGATCGATAGGCTCAGGAGGAGAGCCAAGCGGAAGGAGGAGGAGATC
ACTAAGACTGTCCTTGCCAGACTGCAGGCGCAAGAGGCGTCGGGTTCGTC
CGTCATCGATGACGATGAGATGAGCCTCGGCGGTGCCCCTAGGGGAGACG
ACGGCGGCGGTGGCAGGGAGTCGCTCGACAGCGCAGCGGGTACGACGAGG
GGAGCCAGCGCGGCGCTCAGGTCTCAGCTCGCCGACATCAAG
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