mRNA_Ecto-sp13_S_contig15369.4030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15369.4030.1
Unique NamemRNA_Ecto-sp13_S_contig15369.4030.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15369.4030.1 vs. uniprot
Match: A0A6H5KVL8_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL8_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.540e-42
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 3 
Query:    3 PYRPAGGRGSVRPGGGARDEWGSLMSERVTAVEGGRWSESVSAAKGTFKKLFTVGRKSDNRRKRVHGGRGSGRXXXXXXXXXXXGRYPPGARDPGR 290
            PYRP GGRGS RPGGGARDEWGSLMSERVTAVEGGRWSESVSAAKGTFKKLFTVGRKSDNRRKRV+GGRGSGRXXXXXXXXXXXGRYP GARDPGR
Sbjct:   32 PYRPTGGRGSARPGGGARDEWGSLMSERVTAVEGGRWSESVSAAKGTFKKLFTVGRKSDNRRKRVNGGRGSGRXXXXXXXXXXXGRYPLGARDPGR 127
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BLAST of mRNA_Ecto-sp13_S_contig15369.4030.1 vs. uniprot
Match: D7FXW6_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW6_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 6.300e-41
Identity = 90/96 (93.75%), Postives = 92/96 (95.83%), Query Frame = 3 
Query:    3 PYRPAGGRGSVRPGGGARDEWGSLMSERVTAVEGGRWSESVSAAKGTFKKLFTVGRKSDNRRKRVHGGRGSGRXXXXXXXXXXXGRYPPGARDPGR 290
            PYR  GGRGS RPGGGARDEWGSLMSERVTAVEGGRWSESVSAAKGTFKKLF+VGRKSDNRRKRV+GGRGSGRXXXXXXXXXXXGRYPPGAR PGR
Sbjct:  149 PYRHTGGRGSARPGGGARDEWGSLMSERVTAVEGGRWSESVSAAKGTFKKLFSVGRKSDNRRKRVNGGRGSGRXXXXXXXXXXXGRYPPGARGPGR 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15369.4030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVL8_9PHAE2.540e-4295.83ABC transporter domain-containing protein n=1 Tax=... [more]
D7FXW6_ECTSI6.300e-4193.75ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15369contigEcto-sp13_S_contig15369:418..1486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size395
Hectar predicted targeting categoryother localisation
Exons3
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.5938272-CDS-Ecto-sp13_S_contig15369:417..4821681462817.5938272-CDS-Ecto-sp13_S_contig15369:417..482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15369 418..482 +
1681462817.6080387-CDS-Ecto-sp13_S_contig15369:911..10411681462817.6080387-CDS-Ecto-sp13_S_contig15369:911..1041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15369 912..1041 +
1681462817.6162167-CDS-Ecto-sp13_S_contig15369:1286..14841681462817.6162167-CDS-Ecto-sp13_S_contig15369:1286..1484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15369 1287..1484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15369.4030.1prot_Ecto-sp13_S_contig15369.4030.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15369 418..1484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15369.4030.1

>prot_Ecto-sp13_S_contig15369.4030.1 ID=prot_Ecto-sp13_S_contig15369.4030.1|Name=mRNA_Ecto-sp13_S_contig15369.4030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
SLTALLEGEARCGQVVGRETSGGPSCPRESLPLREVAGLRACPRPREPSR
SSSPSAGKATTDGSEFTVAAVAAGVEVAAAAGEGAGGTLRGLATRGVEVG
GTLKGEVHRMEPPREAVGMEAGTAGEGVPVT
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mRNA from alignment at Ecto-sp13_S_contig15369:418..1486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15369.4030.1 ID=mRNA_Ecto-sp13_S_contig15369.4030.1|Name=mRNA_Ecto-sp13_S_contig15369.4030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1069bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15369:418..1486+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTTACCGCCCTGCTGGAGGGAGAGGCTCGGTGCGGCCAGGTGGTGGG
GCGAGAGACGAGTGGGTGAGCACTTCGAAACACCTTTTTGCTTAATCGTC
TGAACTAGCGTGCTGTTCAGCTTTTATGATCGGAGATTAGTGACAGCAGT
ACCGAAAACATACGTCCTGCATGCATGGGCTACAAGTATGCCCGAAAACT
TGAATGCTACAGACCATCCTGAGAAATGCCTGGAAAGCGTCGTTTCTTTG
GTGTTCCTGCCGCCAACTCTGGGACTCTTCAACTGCTCGGACTTGACCTT
GTCTTTGGGTGCGCAACATGCACAACAACGGAAGGAGCAACAGGCCTACC
TACCTTGTGAAACCCCGCCTGCGTGTTGTTGTCGCTAGAAGGAAATGAAA
TGTCTTGGGGCTTCCCCTGACCTGACCTCTTCTTGTCTCGAAATTACTCC
AATCATGAAATCATGGTGTCCCTCTGTTTCTCGGAAACATCTAGGGGTCC
CTCATGTCCGAGAGAGTCACTGCCGTTGAGGGAGGTCGCTGGTCTGAGAG
CGTGTCCGCGGCCAAGGGAACCTTCAAGAAGCTCTTCACCGTCGGCCGGA
AAAGCGACAACCGACGGAAGCGAGGTGATCGGTCGGTCAAACGGGTACTG
AGTGTTGTGCATGCATATGAAGGAATGATGCCGTGGGTGCTTTAGCACCA
TGTTCTTGTCTTTGATACGGTAACACGAAGTTTCCCCTGCAGTATGCGCT
CTGTGTCGCTTTATTTCACCTCATGGAGCTATTATAAGCTCTTTGGTGAG
TGCGCCACCCCATTCTTCCGCTGGCCTGATTTACCGATACTGCTTGCATG
TGTTGTTTCTCGACCCCAGTTCACGGTGGCCGCGGTAGCGGCAGGGGTAG
AGGTGGCGGCCGCAGCCGGGGAGGGGGCGGGCGGTACCCTCCGGGGGCTC
GCGACCCGGGGCGTGGAGGTAGGGGGTACCCTCAAGGGCGAGGTTCATCG
TATGGAGCCTCCCCGGGAGGCCGTGGGGATGGAGGCTGGAACAGCGGGGG
AAGGGGTTCCGGTTACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15369:418..1486+

>mRNA_Ecto-sp13_S_contig15369.4030.1 ID=mRNA_Ecto-sp13_S_contig15369.4030.1|Name=mRNA_Ecto-sp13_S_contig15369.4030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15369:418..1486+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTTACCGCCCTGCTGGAGGGAGAGGCTCGGTGCGGCCAGGTGGTGGG
GCGAGAGACGAGTGGGGGTCCCTCATGTCCGAGAGAGTCACTGCCGTTGA
GGGAGGTCGCTGGTCTGAGAGCGTGTCCGCGGCCAAGGGAACCTTCAAGA
AGCTCTTCACCGTCGGCCGGAAAAGCGACAACCGACGGAAGCGAGTTCAC
GGTGGCCGCGGTAGCGGCAGGGGTAGAGGTGGCGGCCGCAGCCGGGGAGG
GGGCGGGCGGTACCCTCCGGGGGCTCGCGACCCGGGGCGTGGAGGTAGGG
GGTACCCTCAAGGGCGAGGTTCATCGTATGGAGCCTCCCCGGGAGGCCGT
GGGGATGGAGGCTGGAACAGCGGGGGAAGGGGTTCCGGTTACG
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