mRNA_Ecto-sp13_S_contig15363.4028.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15363.4028.1
Unique NamemRNA_Ecto-sp13_S_contig15363.4028.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: D8LRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF2_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.260e-41
Identity = 76/81 (93.83%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   16 SSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHARAGSR 258
            S  LGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRF Q NSEVAVDWEVI AKKEKEREDEHARAGSR
Sbjct:  351 SPFLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFFQSNSEVAVDWEVISAKKEKEREDEHARAGSR 431
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.420e-39
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   34 IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHARAGSR 258
            IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVI AKKEKEREDEHARAGSR
Sbjct:  696 IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVISAKKEKEREDEHARAGSR 770
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: A0A7S2CV51_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CV51_9STRA)

HSP 1 Score: 102 bits (255), Expect = 8.050e-25
Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    7 LSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHARAGS 255
            L+  ++   IRLFRW RALELAV+ ++HVDTVLGYRQ +L   GK+ETDKRFLQ+   V +DWE I AKK++E++DE AR+G+
Sbjct:  191 LTYRAIKMNIRLFRWGRALELAVKSRSHVDTVLGYRQKYLDQFGKKETDKRFLQYAESVEIDWEAIQAKKQQEKDDERARSGN 273
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: A0A7S2G6X5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6X5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.260e-23
Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    7 LSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHARAGS 255
            L+  ++   IRLFRW RALELAV+ ++HVDTVLGYRQ +L   GK+ETDKRFLQ+   V +DWE I AKK++E++DE AR+G+
Sbjct:  686 LTYRAIKMNIRLFRWGRALELAVKSRSHVDTVLGYRQKYLDQFGKKETDKRFLQYAESVEIDWEAIQAKKQQEKDDERARSGN 768
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: A0A835ZN10_9STRA (Intraflagellar transport protein 80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN10_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.840e-22
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   34 IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHARA 249
            +RLFRWSRALELAVQ+++HVDTVLGYRQ  L +  K+ETD RFLQ+  +V VDW+VI AK+EKE EDE  +A
Sbjct:  692 LRLFRWSRALELAVQYRSHVDTVLGYRQRHLAAFKKQETDARFLQYAEQVTVDWDVIAAKEEKELEDERTKA 763
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: A0A2P4YQH0_9STRA (Intraflagellar Transport protein 80 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQH0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.850e-21
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    7 LSISSLLGQIRLFRWSRALELAVQHKT----HVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKERE 231
            LS  S+   +RLFRW RAL+LA++H T    HVDTVL YR+ FL ++  +ETDK+FLQ++ +VA+DWE I  KKE ERE
Sbjct:    2 LSWPSIKLNLRLFRWDRALDLAIKHTTDAGTHVDTVLAYRERFLAANKLQETDKKFLQYSKQVAIDWETISKKKELERE 80
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: UPI001C3495D8 ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C3495D8)

HSP 1 Score: 87.8 bits (216), Expect = 1.220e-20
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   34 IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHARAGS 255
            I LF W RALE+AV+HKTHVDTVL YRQ FL+  G++ET+KRFLQ+   V VDWE I AK E E   E  RA +
Sbjct:   29 IDLFNWERALEMAVKHKTHVDTVLAYRQRFLQKFGRKETNKRFLQYAEGVEVDWEKIQAKIEMELSKERERAAN 102
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: UPI001E1DB922 (intraflagellar transport protein 80 homolog isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB922)

HSP 1 Score: 91.7 bits (226), Expect = 1.050e-19
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 SSLSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHAR 246
            + L+  ++L  I+L+ W RALELAV+HKTHVDTVLGYRQ ++   GK+ET+KRFLQ+   + +DWE I AK E E + E  R
Sbjct:  692 AGLTFRAILLNIQLYNWDRALELAVKHKTHVDTVLGYRQKYMTQYGKQETNKRFLQYKEGIEIDWEKIEAKIEMEYQKERER 773
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: A0A0S7GS10_9TELE (IFT80 n=5 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GS10_9TELE)

HSP 1 Score: 86.7 bits (213), Expect = 1.060e-19
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:   34 IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHARAGS 255
            I LF W+RALELAV+HKTHVDTVL YR  FL++ G++ET+KRFLQ++  V VDWE I AK E E   E  +A +
Sbjct:   71 IDLFNWNRALELAVKHKTHVDTVLAYRGKFLQTFGRKETNKRFLQYSEGVEVDWEKIQAKIEMELSKEREKAAN 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Match: A0A2G8JQ60_STIJA (Putative intraflagellar transport protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JQ60_STIJA)

HSP 1 Score: 90.5 bits (223), Expect = 1.120e-19
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 SSLSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVDWEVIGAKKEKEREDEHARAGSR 258
            +SL   +++  I L+ W RALELAV+HKTHVDTVLGYRQ FL S  K ET+KRFLQF   V V+WE I AK E E + E  R  ++
Sbjct:  269 ASLIFRAIMMNISLYNWDRALELAVKHKTHVDTVLGYRQKFLNSFNKVETNKRFLQFAQGVEVNWEQIQAKIESEYQKEKERPNAK 354
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15363.4028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRF2_ECTSI2.260e-4193.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIC7_ECTSI4.420e-3998.67Intraflagellar transport protein 80 n=2 Tax=Ectoca... [more]
A0A7S2CV51_9STRA8.050e-2559.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2G6X5_9STRA1.260e-2359.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZN10_9STRA2.840e-2266.67Intraflagellar transport protein 80 n=1 Tax=Tribon... [more]
A0A2P4YQH0_9STRA6.850e-2155.70Intraflagellar Transport protein 80 n=1 Tax=Phytop... [more]
UPI001C3495D81.220e-2060.81(large yellow croaker) hypothetical protein n=1 Ta... [more]
UPI001E1DB9221.050e-1953.66intraflagellar transport protein 80 homolog isofor... [more]
A0A0S7GS10_9TELE1.060e-1959.46IFT80 n=5 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
A0A2G8JQ60_STIJA1.120e-1955.81Putative intraflagellar transport protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15363contigEcto-sp13_S_contig15363:3..1146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score149.4
Seed ortholog evalue7.5e-34
Seed eggNOG ortholog2880.D8LRF2
Preferred nameIFT80
Model size258
KEGG koko:K19678
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
Exons2
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
Cds size258
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.4863534-CDS-Ecto-sp13_S_contig15363:2..1821681462817.4863534-CDS-Ecto-sp13_S_contig15363:2..182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15363 3..182 +
1681462817.4958708-CDS-Ecto-sp13_S_contig15363:1068..11461681462817.4958708-CDS-Ecto-sp13_S_contig15363:1068..1146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15363 1069..1146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15363.4028.1prot_Ecto-sp13_S_contig15363.4028.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15363 3..1146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15363.4028.1

>prot_Ecto-sp13_S_contig15363.4028.1 ID=prot_Ecto-sp13_S_contig15363.4028.1|Name=mRNA_Ecto-sp13_S_contig15363.4028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
SSLSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEET
DKRFLQFNSEVAVDWEVIGAKKEKEREDEHARAGSR
back to top

mRNA from alignment at Ecto-sp13_S_contig15363:3..1146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15363.4028.1 ID=mRNA_Ecto-sp13_S_contig15363.4028.1|Name=mRNA_Ecto-sp13_S_contig15363.4028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15363:3..1146+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCTTTGTCCATCTCCTCTCTCCTTGGACAGATCCGCCTCTTCCGGTG
GTCCCGTGCGCTGGAGCTCGCCGTCCAGCACAAGACTCACGTGGATACCG
TGCTGGGGTATCGGCAGGCCTTCCTTAAGTCGTCGGGCAAGGAAGAAACC
GACAAGAGGTTCTTGCAGTTCAATTCCGAGGTGGGAAGATGGAGCTAGAG
AATGGAGGAACAGTGCATCTCTAATCATATAAGTCTCAGACGTAACGTGT
ACCATAGTTTTACTATTACCGCAATCTATCCTCCACCAGTAGCGGCCTCG
GTAGACCTGGATTAAGACAAAAAATAGATATACGGACTAAGGGCGTCGGG
AACCCCGCTACATGGACCGCCTTGCGAGGAACCCGGTGTTTTTTGTTGTG
AGGGGGGGTAACCTTACAGAAGGTGATGATGATGGGGACGGTGAGACCTG
CGAGGAGCTGTGTCTTGAGGAGGTCCTCGGTATTATAGGGGGCAGGGGCA
GGGTGTTTGGGAGTCTTTCATGGGCTGACGTGCCTACCACTGCGAAGTCG
TGGGTGCACTTTTTGACGCCACGTTGACCGGGCAACGGACGTACGTGTTT
CACAAATCTGCGATACGCCCGCCGTCAGCCATACCAGCTATGTACAGAGT
GTGCAGATACTCAACGACCATACTTACTCACTCTGACGCGGTGGGTGGAC
GCTACTGGAGTTCTTCAAATTTCACTCTGCAAGGTTGACTTCGGCGACGA
GAGACACGCGCATGTCATGTCAGCATCCACTCGCAACCAGAAATGTTTCC
TGAACGACGAACAATCTGTGACCTAAGTCATATCGAAACAGCTACCAGCA
TAGCCACTCCGGACGTACAACCTCCCCCCGACCAGTGAATCGTCTGTGTG
CCTTACCTGGTAGTGGTGGACGTCTACATCGATGGTATCTGGCCGAGGAA
CGTCGATGGTCTAAATAAGTGGAAGACTGTTGAGCACTCGAAGCACACAC
GAATGGCACGAATGGCACAACGACCGGCACATCATTAATTTGCCTGTGAC
TGTACCGCCTTCAAAGGTGGCAGTGGATTGGGAAGTGATCGGCGCCAAAA
AGGAGAAGGAGAGGGAGGATGAGCACGCTAGGGCGGGTAGCCGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15363:3..1146+

>mRNA_Ecto-sp13_S_contig15363.4028.1 ID=mRNA_Ecto-sp13_S_contig15363.4028.1|Name=mRNA_Ecto-sp13_S_contig15363.4028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15363:3..1146+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCTTTGTCCATCTCCTCTCTCCTTGGACAGATCCGCCTCTTCCGGTG
GTCCCGTGCGCTGGAGCTCGCCGTCCAGCACAAGACTCACGTGGATACCG
TGCTGGGGTATCGGCAGGCCTTCCTTAAGTCGTCGGGCAAGGAAGAAACC
GACAAGAGGTTCTTGCAGTTCAATTCCGAGGTGGCAGTGGATTGGGAAGT
GATCGGCGCCAAAAAGGAGAAGGAGAGGGAGGATGAGCACGCTAGGGCGG
GTAGCCGA
back to top