mRNA_Ecto-sp13_S_contig15361.4027.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15361.4027.1
Unique NamemRNA_Ecto-sp13_S_contig15361.4027.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15361.4027.1 vs. uniprot
Match: D7FUQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ6_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 1.840e-97
Identity = 166/189 (87.83%), Postives = 175/189 (92.59%), Query Frame = 1 
Query:    1 LEGVSQESLCYVEITHEGASSGQTRVTSTYDASPSWNRTLTLPLNSLQQGHLKVSVCPGAPLDEERLAELAFGGKLPPAPLGFVSVPVADLAGLERSRPFTLEAGGGSPVARGPRSIDLGFTVVEDSAANGNGDGGKEPAHSSGVFSTSDFSVDPPLPVHSSSSSTRQSEPRARWEGAPESNGGVGKMF 567
            L+G  QESLCY+E+THEG SSGQTRVTST DAS SW+RTLTLPLNSLQQGHLKVSVCPGAPLDEERLAELAFGGKLPPAPLGFVSVPVADLAGLERSRPFTLEA GGSP+ARGPRSIDLGFTVVEDSAANG+GDGGKEPAHSSG+FSTSDFSVDPPLPVHSSSSSTR+SEPRAR +GA E  GG    F
Sbjct:   18 LQGALQESLCYIEVTHEGTSSGQTRVTSTCDASQSWSRTLTLPLNSLQQGHLKVSVCPGAPLDEERLAELAFGGKLPPAPLGFVSVPVADLAGLERSRPFTLEAEGGSPIARGPRSIDLGFTVVEDSAANGSGDGGKEPAHSSGIFSTSDFSVDPPLPVHSSSSSTRRSEPRARSKGAGELIGGGAGPF 206
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BLAST of mRNA_Ecto-sp13_S_contig15361.4027.1 vs. uniprot
Match: A0A6H5JRR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR9_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 2.350e-80
Identity = 140/153 (91.50%), Postives = 145/153 (94.77%), Query Frame = 1 
Query:  142 QQGHLKVSVCPGAPLDEERLAELAFGGKLPPAPLGFVSVPVADLAGLERSRPFTLEAGGGSPVARGPRSIDLGFTVVEDSAANGNGDGGKEPAHSSGVFSTSDFSVDPPLPVHSSSSSTRQSEPRARWEGAPESNGGVGKMFGSGGAVQQQAT 600
            +QGHLKVSVCPGAPLDEERLAELAF GKLPPAPLGFV VPVADLAGLERSRPFTLEA GGSPVARGPRSIDLGFTVVED AAN  GDGGKEPAHSSG+FSTSDFSVDPPLPVHSSSSSTR+SEPRARWEGA ESNGG G++FGSGGAVQQQAT
Sbjct:    3 RQGHLKVSVCPGAPLDEERLAELAFEGKLPPAPLGFVGVPVADLAGLERSRPFTLEAEGGSPVARGPRSIDLGFTVVEDIAANRLGDGGKEPAHSSGIFSTSDFSVDPPLPVHSSSSSTRRSEPRARWEGAGESNGGAGEVFGSGGAVQQQAT 155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15361.4027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUQ6_ECTSI1.840e-9787.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRR9_9PHAE2.350e-8091.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15361contigEcto-sp13_S_contig15361:444..4179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size601
Hectar predicted targeting categoryother localisation
Exons4
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.4337568-CDS-Ecto-sp13_S_contig15361:444..7541681462817.4337568-CDS-Ecto-sp13_S_contig15361:444..754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15361 445..754 -
1681462817.4442601-CDS-Ecto-sp13_S_contig15361:1345..14881681462817.4442601-CDS-Ecto-sp13_S_contig15361:1345..1488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15361 1346..1488 -
1681462817.454248-CDS-Ecto-sp13_S_contig15361:2171..22541681462817.454248-CDS-Ecto-sp13_S_contig15361:2171..2254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15361 2172..2254 -
1681462817.461823-CDS-Ecto-sp13_S_contig15361:4115..41791681462817.461823-CDS-Ecto-sp13_S_contig15361:4115..4179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15361 4116..4179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15361.4027.1prot_Ecto-sp13_S_contig15361.4027.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15361 445..4179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15361.4027.1

>prot_Ecto-sp13_S_contig15361.4027.1 ID=prot_Ecto-sp13_S_contig15361.4027.1|Name=mRNA_Ecto-sp13_S_contig15361.4027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
LEGVSQESLCYVEITHEGASSGQTRVTSTYDASPSWNRTLTLPLNSLQQG
HLKVSVCPGAPLDEERLAELAFGGKLPPAPLGFVSVPVADLAGLERSRPF
TLEAGGGSPVARGPRSIDLGFTVVEDSAANGNGDGGKEPAHSSGVFSTSD
FSVDPPLPVHSSSSSTRQSEPRARWEGAPESNGGVGKMFGSGGAVQQQAT
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mRNA from alignment at Ecto-sp13_S_contig15361:444..4179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15361.4027.1 ID=mRNA_Ecto-sp13_S_contig15361.4027.1|Name=mRNA_Ecto-sp13_S_contig15361.4027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3736bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15361:444..4179- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAAGGGGTCTCGCAGGAGTCTCTCTGCTACGTTGAGATCACCCATGA
GGGAGCAAGTTCAGGTACGTAGAGCAATTCAGCAGCTTGTCCGCCATGAC
GACACGTACCCCCCTTCGAAAGCGCGGGAACGATGCAGCAGTGGACTTAT
CACCTGCCTCATCTACACAACCTACCGCTGATTGGGTGGTGTAGCAGCTT
TCTAGCATGGGTGTCCAGAAATGACTGCTGTGGCGGTATTCTTTGATGTC
GAGAAAGTGAACCAACGCCCCCACTCGTGCGGTAAACCTCCAACCTCGCA
TGATTCATATCCAGTGTGGTGGTATGCATACTACTTGGCCGTTGGTGCTT
TCGGGGAACGAATGTACGTGAGGATTGGCAACACGTATGTGATCGCACCG
GATGCCTAAGCCAGCCGTGAGCGGCCATTTGCCGTACGAGCTAGTATCAT
AACTCGTGCGATTCTCCTGTTTGTTGGAGGTATTTACTAACTCTAGACAT
GCTGCGGAATCCGGTGTCTACGGAGAGCATCTGTTCTCAAGCGATTTGCG
TTCCCGTGACTCCAAACTCCGCACGGAAAGGGAGCGGAGGACTCCAGAAT
ATCTGTCATTGATTTCTACTTTTGACTTGCGGATCCCTCGGGACCAGTTT
ATTAGAGTGTACCTTTTTAGGGTAAGTTAGCCTGTTACCACGGGAATCGA
CCGCGTCAAGGGTTGGATCAATACGGACAAATGCAGGTACTGTGTAGAAA
AAAGAGATCGGAACGCTTTTTAATGTGAAGACAACAACAACAAACTCCAG
CCCCCTTGGTTCCAGCGTGTAATTCGTCTTTTTTTGCTCATGGGGCGCAC
GTATCTCGTTGTTTCCTTAAACCATGTGTCTCGGCTGTTGAGGGCGACAA
GATATCTCGAAGCGCTTTTCGAGCGAAAGATTGTTGTATCGATAGGCGTT
TGCCAGATGGATGGGTTTGCACCACCGGTGTGGTATACCCCCTGGACAGC
TGCTAGGTACGGACATTGCTAGCTCGGCCTACGCTTGGCAGTGCAAGCAC
AACAGAGCGGGCAATAATGTCCGCCCAATTGGGGTCGCTTGGTCTATGTT
GAAGACAGCGGGGTGCCCTGCACTACTTTCGGAGTATCGGGCGATCGGAC
TATGCGGTTATCGAAGAAGGGGAGTGGGCATGCATTCCTCGTACAGCAGT
ACGCGTTTCGTGTGCCCCAGTTGGTTGATCTGAGCCACGCGAGTCGGCCA
ACGCATCTTCCGAAGGCAGCAACCAACAACAGCGTCTCCGTGAAGTTTGC
GTTTATGTGTGTGTACCCTACAACTCTCAGTAAACACTGCAATAAGAGCT
CACCTTTGCTGCACCTTCATATGGGGCACATGTCCAATCGTTGTACTTGG
GGCCCCCTCCCCAAGAAACGATTCCCGACGGACGAACCTGTGTTCCTTCA
CTCAGCCGCACCCCCACGTATTGAGAGATGCTGTTCACTCGTCTGCTACA
ACTGTATTTTTGTAGCGGATATCCCTCCACTTTGTTCGCACACCCTCATG
GGGGGCTCCAGACCAGCTGACTTCCCGCCCGGCGTGTAAAACTTGGGCCG
TGGTGTTCTTGTGTGCCCTTTAGTATGGTCCCGGCAACAACGGGCACGGC
AAATCTCAGCAATAACGTTTGCACAATTTGCACCGATGAAGATTGGTACC
ACTTGGTAAACTCCACGGCCCATCACAGCCAAGACAAGACGTGTCACAAT
CTTGCGCTCATGATTGGTACCGTTTGGTTTCCTTCCCCCCGCGCCCACCC
CTGTCTCTCTTGCTCCCCCTCTCTGGTTTGCGAACTCCGTGTAGTCCCTT
GATACTCCTATGAAATGCCTATTTTGGTGCTTTCTGAACCGGTGCCACAC
ACACACACCCGCCACGAAAAAGCAGGGCAAACCCGCGTAACCAGCACGTA
TGACGCCTCGCCGTCTTGGAACCGCACCCTGACGCTGCCCTTGAACAGCC
TCCAGCAGGTAAGCACGGGACGCTTGGAAATGGCGACTTTGCTATGCATC
ATAGCTGGCTGCAGCCGCACCTCCCGCCGTACACAATCACACTTGGATGT
CTAGTTTGTTTGGTTTTTTCCAGCACGAATGCCGTGTGATACTGCCGTAG
CTTAGCGACCAACTGGGTTAGCGTGGCTCGCTCTTTGTGTATGGAGAGAC
AGTTCGCCCTTGACGCTGGGGTCGTATCGTACTGGCCAACGTAGGCAGAG
GAGATAAGCCTGCGGGCAAGGTGCTGTTGCCATGGACTTCCTACGGCGTC
ATTTCCAACACATGTAGCAGATATTACTTTTTGTCTTTTTTTCATCTATG
GTGTTGTTTTCTCGATGTTTTTGCTCTATTCGATCCATTTATCATGCGGT
AAATATCCTTGTTACTGGGTGAGGTTCGTCGCGAGTCCACTGTAGCGAGG
CTAGGCACTATCGACGTTCTAAAGTTCATAATGTGCACGTTGTTAGGGGT
CAAGGTCGGGCTAATTTGAAGTTTTTATGTTTGTTGAAAACTTCCAAGCC
ATTCTTTACTATTTCTTCTCGGGTAGGGAAAGCGTCCTATATCAATCAGA
TCGCCCATGTTGTGAGCCCCCCAGTCTCGTAACTCGCAACACCGCCTGTC
CGATTGCGCCGCATCGGGGGGGCCGTGGCATGTACCGGCAGGGTCACCTT
AAGGTGTCGGTGTGCCCCGGCGCCCCCCTCGACGAGGAGCGGCTGGCCGA
GCTCGCCTTCGGGGGAAAGCTCCCGCCCGCGCCGTTGGGGTTCGTTAGCG
TGCCTGTGGCGGACCTAGCTGGGCTTGAGCGAAGGTGGGTGGTTGTTGTG
TTTTTTGGAACATAAATAATCAGTTCGTTGCTGTTGTCTTTAGAAAATGT
ACACGCAATCACAGAAAAAAATTCCGTTCGAGATATAACCGCAGCAGTCG
AAGGGTGTGTTGAAGTCTTTACATCAGTGAGTGGGGGAAATCGGCTGAAT
GCTGGGCTTATTTCGAGTCTGCTTTTTTTTTTGCACGGGCATTGTGGGGG
GGAACTGTGCCCGTTTTGTTTGCGTGGACGGACGGGGTGAATCACAGGGT
GCGGTTTACCGCGCAGTGCGGTGCGGGTAGCTGACGTTCCGTGGGATACA
GTACATCCGGCGTTACGTGGGATACACCCACGCTGTTCACAAAACACAGC
ACAACACAGAGAGGTCTTGTGTTTCTCCCTCCGCAAGGTGACGTCATAAA
GTGGATTGATTTCCTCCCCCCCCTGTCTTGGATGCCTGAGGAAAGAGGCC
CGACGAGCGCAAACCTCTTCCCCTGACGATTAGCGTCCCCTCCGCCCCTT
CCTTTTTTTTTGTGTCACGTACGCCTGCGTCGTGCGAACTCCCCGCTCCA
TGCCGACCGATCGCACCACCTGCAGCCGACCCTTCACGCTGGAGGCAGGT
GGAGGTTCACCCGTCGCGCGGGGTCCGCGCTCCATCGACCTCGGGTTCAC
AGTGGTGGAAGACAGCGCGGCAAACGGCAACGGGGACGGTGGGAAGGAGC
CCGCACACTCTTCCGGCGTATTTTCCACTTCCGACTTCTCCGTGGACCCG
CCGCTGCCCGTGCACTCCTCCTCGTCCTCGACACGACAGTCTGAACCGCG
GGCCCGCTGGGAAGGAGCGCCGGAATCAAACGGTGGTGTGGGAAAAATGT
TTGGAAGTGGGGGTGCGGTACAGCAGCAGGCGACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15361:444..4179-

>mRNA_Ecto-sp13_S_contig15361.4027.1 ID=mRNA_Ecto-sp13_S_contig15361.4027.1|Name=mRNA_Ecto-sp13_S_contig15361.4027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15361:444..4179- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAAGGGGTCTCGCAGGAGTCTCTCTGCTACGTTGAGATCACCCATGA
GGGAGCAAGTTCAGGGCAAACCCGCGTAACCAGCACGTATGACGCCTCGC
CGTCTTGGAACCGCACCCTGACGCTGCCCTTGAACAGCCTCCAGCAGGGT
CACCTTAAGGTGTCGGTGTGCCCCGGCGCCCCCCTCGACGAGGAGCGGCT
GGCCGAGCTCGCCTTCGGGGGAAAGCTCCCGCCCGCGCCGTTGGGGTTCG
TTAGCGTGCCTGTGGCGGACCTAGCTGGGCTTGAGCGAAGCCGACCCTTC
ACGCTGGAGGCAGGTGGAGGTTCACCCGTCGCGCGGGGTCCGCGCTCCAT
CGACCTCGGGTTCACAGTGGTGGAAGACAGCGCGGCAAACGGCAACGGGG
ACGGTGGGAAGGAGCCCGCACACTCTTCCGGCGTATTTTCCACTTCCGAC
TTCTCCGTGGACCCGCCGCTGCCCGTGCACTCCTCCTCGTCCTCGACACG
ACAGTCTGAACCGCGGGCCCGCTGGGAAGGAGCGCCGGAATCAAACGGTG
GTGTGGGAAAAATGTTTGGAAGTGGGGGTGCGGTACAGCAGCAGGCGACG
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