prot_Ecto-sp13_S_contig15360.4025.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15360.4025.1
Unique Nameprot_Ecto-sp13_S_contig15360.4025.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length563
Homology
BLAST of mRNA_Ecto-sp13_S_contig15360.4025.1 vs. uniprot
Match: A0A6H5KG45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG45_9PHAE)

HSP 1 Score: 489 bits (1260), Expect = 2.840e-155
Identity = 326/475 (68.63%), Postives = 346/475 (72.84%), Query Frame = 0
Query:    2 AAMEEASSAPPGTIGTAPHPATARGQGMATEACLAPGAGAVAGAHGRTVVAAAKGQGAMMGATT-----ATADQGVVVSLGEGKSGGDGCWEVPFFRRWPEVWAVSPTSVHTT-IEADAVHPLFDRKGSAGAAVSGKXXXXXXXXXXDGGSPAGGSMDPRQPAAA-GMDGSSSKGHRILITGRNFAHPVAAADASTGGLCNSGGE--------------ERVIGTSGSGSDSFAGEASGRRKLEQAGGRIAGNGDHLADDGXXXXXGGEVRRSKTRRVIVRFGRKVTVPGKVLSDTLVEAFAPARSEIGFVDVAVVVVAESGAAGGDLASDSVIATTAGAEQHGWRFGRRHAPMLRYRPPPXXXXXXXXXXXXXXXXXLSGKXXXXXXXXXXRGSSETGPQTGPKTVDGDDADYPAAAAAEG------NAREGGAAARGCXXXXXXXGDG--------KEEVVVNGRYGPVPVED 441
            AA EEAS APP T+G A HPA+A  QGM TEACLAPGAG   GAHGRT  AA KGQG MMGATT     +TA++ V VSLGEG SGGDG WEVPFFRRWPEVWAVSPT VHTT +EADAVHPLFDRKGSAG  VSGK    XXXXXX                   G D SSS+GHRILITGRNFAHPVAAADAST  +  S G               ERV+GTSGSG DSF GEASGRR+LEQAGG+ AG GD+LADDG     G E+RRS TRRV+VRFGR +TVPG+VLSDTLVEAFAPARSEIGFVDVAVVVVAESGAAGGDLASDS+IATTA AEQHGWRFGRRHAPMLRYRPP XXXXXXXXXXXXXXXX LSG           RGSSETGPQTG +TVDGD ADYPAA           NAREGG AARGC       GDG        KE VVVNGRYGPVP++D
Sbjct:  411 AAKEEASLAPPETMGIATHPASAPSQGMTTEACLAPGAGT--GAHGRTAAAAVKGQGVMMGATTTATTSSTAEESVAVSLGEGNSGGDGRWEVPFFRRWPEVWAVSPTFVHTTAVEADAVHPLFDRKGSAGVTVSGKGSSSXXXXXXXXXXXXXXXXXXXXXXXXXGTDRSSSQGHRILITGRNFAHPVAAADAST--VLGSDGXXXXXXXXXXXXXXVERVVGTSGSGGDSFTGEASGRRELEQAGGKTAGKGDYLADDGGGGGDGDEIRRSNTRRVLVRFGRDLTVPGEVLSDTLVEAFAPARSEIGFVDVAVVVVAESGAAGGDLASDSIIATTAAAEQHGWRFGRRHAPMLRYRPPXXXXXXXXXXXXXXXXXPLSGMGQRGRKKKQRRGSSETGPQTGLQTVDGDGADYPAAXXXXXXXXXXXNAREGGVAARGCGGE----GDGXXXXXXXXKEAVVVNGRYGPVPLDD 877          
BLAST of mRNA_Ecto-sp13_S_contig15360.4025.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 2.360e-120
Identity = 302/450 (67.11%), Postives = 324/450 (72.00%), Query Frame = 0
Query:    3 AMEEASSAPPGTIGTAPHPATARGQGMATEACLAPGAGAVAGAHGRTVVAAAKGQGAMMGATTAT--ADQGVVVSLGEGKSGGDGCWEVPFFRRWPEVWAVSPTSVHTT-IEADAVHPLFDRKGSAGAAVSGKXXXXXXXXXXDGGSPAGGSMDPRQPAAAGM---DGSSSKGHRILITGRNFAHPVAAADASTGGLCNSGGEERVIGTSGSGSDSFAGEASGRRKLEQAGGRIAGNGDHLADDGXXXXXGGEVRRSKTRRVIVRFGRKVTVPGKVLSDTLVEAFAPARSEIGFVDVAVVVVAESGAAGGDLASDSVIATTAGAEQHGWRFGRRHAPMLRYRPPPXXXXXXXXXXXXXXXXXLSGKXXXXXXXXXXRGSSETGPQTGPKTVDGDDADYPAAAAAEGNAR-----EGGAAARGCXXXXXXXGDGKEEVVVNGRYGPVPVED 441
            AM+EASS PP T+GTAPHPA A+ QGMATEACLAPGAG  A   GRT +AA KGQGAM+GATTAT  A++ VV SLG GKSGGDG WEVPFFRRWPEVWAVSPT VHTT +EA  VHPLFDRKG AGAAVSGK   XXXXXXX                       DGSSSKGHR+LITGRNFAHPVAA  A++  L + GG            D+ +GEASGR +LEQAGG+     DHLA+D      GGE RRSKTRRV+VRFGR V VPGKVLSDTLVEAFAPARSEIGFVDVAVVVVAESGAAGGDLASDSVIATTA A QHGWRFGRRHAPMLRYRP  XXXXXXXXXXXXXXXXX    XXXXXXXXXX        +TGP+TVDG DADYPA              E        XXXXXXX   KE VVVNGRYG VP++D
Sbjct: 1300 AMKEASSVPPETVGTAPHPAAAQRQGMATEACLAPGAGTAA--RGRTAIAATKGQGAMVGATTATTAAEESVVASLGGGKSGGDGRWEVPFFRRWPEVWAVSPTFVHTTAVEAVTVHPLFDRKGPAGAAVSGKGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRDGSSSKGHRVLITGRNFAHPVAADVAASAVLGSEGGXXXXXXXXXXXXDALSGEASGRGELEQAGGKTGEKEDHLANDAAG---GGETRRSKTRRVLVRFGRDVAVPGKVLSDTLVEAFAPARSEIGFVDVAVVVVAESGAAGGDLASDSVIATTAAAGQHGWRFGRRHAPMLRYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ETGPQTVDGGDADYPAXXXXXXXXXXXXVCEXXXXXXXXXXXXXXXXXXKEAVVVNGRYGRVPLDD 1743          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15360.4025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG45_9PHAE2.840e-15568.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH97_ECTSI2.360e-12067.11Similar to chromosome fragility associated gene 1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 458..481
NoneNo IPR availableCOILSCoilCoilcoord: 533..560
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 517..534
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 535..562
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..516

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15360contigEcto-sp13_S_contig15360:2145..3899 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15360.4025.1mRNA_Ecto-sp13_S_contig15360.4025.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15360 802..4160 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15360.4025.1 ID=prot_Ecto-sp13_S_contig15360.4025.1|Name=mRNA_Ecto-sp13_S_contig15360.4025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=563bp
MAAMEEASSAPPGTIGTAPHPATARGQGMATEACLAPGAGAVAGAHGRTV
VAAAKGQGAMMGATTATADQGVVVSLGEGKSGGDGCWEVPFFRRWPEVWA
VSPTSVHTTIEADAVHPLFDRKGSAGAAVSGKGSGSGSGGGGDGGSPAGG
SMDPRQPAAAGMDGSSSKGHRILITGRNFAHPVAAADASTGGLCNSGGEE
RVIGTSGSGSDSFAGEASGRRKLEQAGGRIAGNGDHLADDGGGGGDGGEV
RRSKTRRVIVRFGRKVTVPGKVLSDTLVEAFAPARSEIGFVDVAVVVVAE
SGAAGGDLASDSVIATTAGAEQHGWRFGRRHAPMLRYRPPPPPFPPLPGA
TKKSSSSPLSGKGKRGRKKKKRRGSSETGPQTGPKTVDGDDADYPAAAAA
EGNAREGGAAARGCGGEGDGGGDGKEEVVVNGRYGPVPVEDDEEEAGGGD
GQGGEASASASSSSSEEMEEEEEEEEEERRRSWKRLRGCRRGRLVGVGLA
GEVLPAGRGGGRSSRRTMMTMMMMVMMVGSQLQLRQKKKYQQQEQQQKEL
KQELQQKDQQQQ*
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