mRNA_Ecto-sp13_S_contig15360.4026.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15360.4026.1
Unique NamemRNA_Ecto-sp13_S_contig15360.4026.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15360.4026.1 vs. uniprot
Match: A0A6H5KG45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG45_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.370e-15
Identity = 78/150 (52.00%), Postives = 85/150 (56.67%), Query Frame = -2 
Query:    3 DGNIDGSPQNPAVRMAAAGGCDGDGDSGGGDGAHVAPIEAPDATAAAAKPAELLAGKKLFVAASDISEISDISE---ISAAATTSXXXXTGPAEAIPSSTKPPPAAPAPALELEHEMPQSAAVSHFSQISQVSEPXXXXXXXXXPPTAVP 443
            DGN++GSPQNP       GGC+   D GGGDGA+VA IEAP ATAAAA+PAELLAGKK FV  SD+       E   +SAAATTS     GP                   E EHEMP SAAVS           XXXXXXX  PPTAVP
Sbjct:  996 DGNMNGSPQNPV------GGCN---DDGGGDGANVAAIEAPAATAAAAEPAELLAGKKHFVVVSDVXXXXXXXEQTAVSAAATTSKSTAAGPXXXXXXXXXX--XXXXXXXEPEHEMPHSAAVSQIXXXXXXXXXXXXXXXXEQPPTAVP 1134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15360.4026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KG45_9PHAE1.370e-1552.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15360contigEcto-sp13_S_contig15360:1607..2053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size448
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.2924008-CDS-Ecto-sp13_S_contig15360:1606..20531681462817.2924008-CDS-Ecto-sp13_S_contig15360:1606..2053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15360 1607..2053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15360.4026.1prot_Ecto-sp13_S_contig15360.4026.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15360 1607..2053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15360.4026.1

>prot_Ecto-sp13_S_contig15360.4026.1 ID=prot_Ecto-sp13_S_contig15360.4026.1|Name=mRNA_Ecto-sp13_S_contig15360.4026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
YGTAVGGCSGGGGGGGGSETWEIWEKWETAALCGISCSSSNAGAGAAGGG
LVEEGMASAGPVAVDVDVVAAAEISEMSEISEMSEAATKSFFPASNSAGF
AAAAVASGASIGATCAPSPPPLSPSPSHPPAAAIRTAGFWGLPSMFPSA
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mRNA from alignment at Ecto-sp13_S_contig15360:1607..2053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15360.4026.1 ID=mRNA_Ecto-sp13_S_contig15360.4026.1|Name=mRNA_Ecto-sp13_S_contig15360.4026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15360:1607..2053+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGGTACCGCCGTCGGCGGCTGCTCTGGCGGCGGCGGCGGCGGTGGTGG
TTCGGAGACTTGGGAGATTTGGGAGAAGTGGGAGACGGCTGCGCTTTGCG
GCATCTCGTGCTCTAGCTCTAACGCTGGCGCTGGCGCTGCTGGTGGTGGT
TTGGTGGAGGAGGGGATGGCCTCTGCTGGTCCGGTCGCCGTCGATGTCGA
CGTTGTTGCCGCCGCTGAAATTTCGGAGATGTCGGAGATCTCGGAGATGT
CGGAGGCGGCGACGAAGAGCTTCTTTCCGGCCAGCAACTCCGCCGGTTTC
GCAGCAGCTGCTGTTGCGTCTGGTGCTTCTATTGGTGCAACGTGTGCCCC
ATCACCACCACCACTATCACCATCACCATCACACCCGCCGGCCGCGGCCA
TTCGCACGGCAGGATTCTGGGGGCTGCCGTCTATGTTTCCGTCAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15360:1607..2053+

>mRNA_Ecto-sp13_S_contig15360.4026.1 ID=mRNA_Ecto-sp13_S_contig15360.4026.1|Name=mRNA_Ecto-sp13_S_contig15360.4026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15360:1607..2053+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGGTACCGCCGTCGGCGGCTGCTCTGGCGGCGGCGGCGGCGGTGGTGG
TTCGGAGACTTGGGAGATTTGGGAGAAGTGGGAGACGGCTGCGCTTTGCG
GCATCTCGTGCTCTAGCTCTAACGCTGGCGCTGGCGCTGCTGGTGGTGGT
TTGGTGGAGGAGGGGATGGCCTCTGCTGGTCCGGTCGCCGTCGATGTCGA
CGTTGTTGCCGCCGCTGAAATTTCGGAGATGTCGGAGATCTCGGAGATGT
CGGAGGCGGCGACGAAGAGCTTCTTTCCGGCCAGCAACTCCGCCGGTTTC
GCAGCAGCTGCTGTTGCGTCTGGTGCTTCTATTGGTGCAACGTGTGCCCC
ATCACCACCACCACTATCACCATCACCATCACACCCGCCGGCCGCGGCCA
TTCGCACGGCAGGATTCTGGGGGCTGCCGTCTATGTTTCCGTCAGCG
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