mRNA_Ecto-sp13_S_contig15357.4023.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15357.4023.1
Unique NamemRNA_Ecto-sp13_S_contig15357.4023.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: D7G583_ECTSI (Acetylornithine transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G583_ECTSI)

HSP 1 Score: 575 bits (1481), Expect = 5.770e-204
Identity = 293/302 (97.02%), Postives = 296/302 (98.01%), Query Frame = 1
Query:    1 MMFAALIAGAFVVGGTDGFAASSSAFSGGNMLHHAPRSSQVFSMVSTPPTPSTASTSSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            M+FAALIAGAFVVGGTDGFAASSSAFSGGNMLHH PRSSQ FSMVSTPPTPSTASTSSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHAD DL AAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVP GFEYATYNDPEDLKRVVKRINRRGKIRS+FGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQ G+
Sbjct:    1 MIFAALIAGAFVVGGTDGFAASSSAFSGGNMLHHGPRSSQAFSMVSTPPTPSTASTSSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADSDLAAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVP-GFEYATYNDPEDLKRVVKRINRRGKIRSLFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQTGM 301          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: A0A835ZAE5_9STRA (Acetylornithine transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAE5_9STRA)

HSP 1 Score: 382 bits (981), Expect = 4.960e-128
Identity = 191/282 (67.73%), Postives = 230/282 (81.56%), Query Frame = 1
Query:   64 SSSAFSGGNMLHHAPRSSQ-VFSMVSTPPTPSTASTSSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            SS AF+   + H + +      +MV+TP  P  +S  +APLT D+++ YVQ TYGRYPLTIVRG+GC L D DGKEYLD VAGISTCALGHADP+L +AV  QM + HH+SNLYYIPEQG+LAKWLV+NSCADRVFFCNSGAEANEA IKLARK+A T LG+  PVI+TA++SFHGRTLAT+TATGQP YQK+FGPL P+GFEY TYND +DL+  VKRIN R K+R++ G P+R VA I+MEALQGEGG+VPAT EFF+ VRE+C+ETGALM+ DEVQ G+
Sbjct:   21 SSDAFTSSPVAHTSKQHRHSTLTMVATPEAPQVSS--AAPLTMDEYSKYVQTTYGRYPLTIVRGKGCHLVDKDGKEYLDMVAGISTCALGHADPELTSAVSAQMSRMHHISNLYYIPEQGRLAKWLVENSCADRVFFCNSGAEANEAQIKLARKYAHTVLGLDLPVIITARQSFHGRTLATVTATGQPKYQKDFGPL-PSGFEYVTYNDIDDLRATVKRINGRAKLRALLGLPKRGVAGILMEALQGEGGIVPATREFFAAVREICNETGALMMCDEVQTGM 299          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: A0A6V1MZH1_HETAK (Acetylornithine transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MZH1_HETAK)

HSP 1 Score: 321 bits (823), Expect = 1.820e-104
Identity = 154/240 (64.17%), Postives = 194/240 (80.83%), Query Frame = 1
Query:  187 QDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            Q+QF + V  TYGRYP+ I  G+GC+L  ++GKEYLDFVAGISTCALGHA+  ++ AV DQMKK HHVSNLYYIP QG+LA+ LV+ SCADRVFFCNSGAEANEA IKLARK+  T+LG+ EP+I+TA  SFHGRTLAT+TAT QP YQ++FGP+VP GF +AT+ND  +L+ +V+ +NR+G   + FGRPR  VAA+++E LQGEGG+ P   E+F  VR LCDE GAL+++DEVQVG+
Sbjct:   42 QEQFQSNVMTTYGRYPIAIKEGKGCRLVSTEGKEYLDFVAGISTCALGHANQRMIDAVTDQMKKVHHVSNLYYIPGQGELAQKLVEKSCADRVFFCNSGAEANEAAIKLARKYGHTQLGLDEPLIITAHASFHGRTLATITATAQPKYQQDFGPMVP-GFHHATFNDLGELQELVRALNRQGAQAAQFGRPRAGVAAVLLEPLQGEGGINPGRREYFQGVRALCDEVGALLMLDEVQVGV 280          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: A0A6U1PT46_9STRA (Acetylornithine transaminase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PT46_9STRA)

HSP 1 Score: 319 bits (818), Expect = 6.960e-104
Identity = 158/240 (65.83%), Postives = 187/240 (77.92%), Query Frame = 1
Query:  187 QDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            Q+++ + V +TYGRYP+TI  G+GCKL   +GKEYLDFVAGISTCALGHAD  L+ A+  QM+K HHVSNLYYIPEQ  LA+ LV NSCADR FFCNSGAEANEA IKL RK+A+T+ G+  PVI+TA  SFHGRTLA +TATGQP YQ+NFGPL P GFEYATYND E L+ +VK+IN  G          R VA IMMEALQGEGG+ P+T EF    RE+CDETGAL+++DEVQVG+
Sbjct:   40 QEKYQSNVMSTYGRYPITIKEGKGCKLVSVEGKEYLDFVAGISTCALGHADDRLIEAITKQMQKVHHVSNLYYIPEQADLAELLVKNSCADRAFFCNSGAEANEAAIKLCRKYAATEKGVKSPVIITALDSFHGRTLAAITATGQPKYQQNFGPL-PPGFEYATYNDAEGLRSLVKKINEDGASEG------RKVAGIMMEALQGEGGIRPSTVEFMKAAREICDETGALLMMDEVQVGV 272          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: A0A2W4U0S4_9CYAN (Acetylornithine aminotransferase n=1 Tax=Leptolyngbya foveolarum TaxID=47253 RepID=A0A2W4U0S4_9CYAN)

HSP 1 Score: 318 bits (815), Expect = 1.280e-103
Identity = 153/249 (61.45%), Postives = 190/249 (76.31%), Query Frame = 1
Query:  160 ASTSSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            A+ +SA     QF+ +V  TYGR+P+ + RGEGC+L+DS+G+EYLDFVAGI+TC LGHA P ++AA G+QMKK HHVSNLYYIPEQG LA+WL  +SCADRVFFCNSGAEANE  IKLARK+  T+LGI  P+++TAK SFHGRTLAT+TATGQP YQKNF PLVP GF Y  YND E LK  +  ++            +R VAAI++E +QGEGGV P  P +F  +R+LCDETG L+++DEVQVG+
Sbjct:   19 ANDASAAFEPAQFDQHVMATYGRFPIALERGEGCRLWDSEGREYLDFVAGIATCTLGHAHPKMIAAAGEQMKKLHHVSNLYYIPEQGALAQWLTKHSCADRVFFCNSGAEANEGAIKLARKYGHTELGIEAPIVITAKASFHGRTLATVTATGQPKYQKNFNPLVP-GFHYVPYNDIEALKATIAELDAE----------QRQVAAILLEPMQGEGGVCPGNPIYFKQIRQLCDETGILLMLDEVQVGM 256          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: K8YRG0_NANGC (Acetylornithine transaminase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRG0_NANGC)

HSP 1 Score: 315 bits (808), Expect = 5.870e-102
Identity = 157/238 (65.97%), Postives = 187/238 (78.57%), Query Frame = 1
Query:  196 FNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRS-IFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            F   +  TYGRYP+T+V+G+G KL+DS GKEYLDFVAGISTC LGHA+P L AAV +Q+ K HHVSNLYY  EQG+L  WLV++S AD+VFFCNSGAEANEA IKLARKHA  KLG+ EPVI+TAK SFHGRTLA +TATGQP Y + F PLVP GF Y  YND   L+R V+RIN  G++R  + G+ RR VAAI+MEALQGEGG+ P +  FF+  R LCDETGAL++VDEVQ G+
Sbjct:   65 FAQNIMATYGRYPITMVKGQGVKLWDSTGKEYLDFVAGISTCCLGHANPGLTAAVTEQLGKLHHVSNLYYTAEQGRLGAWLVEHSVADKVFFCNSGAEANEAAIKLARKHAHEKLGLGEPVIITAKASFHGRTLAAITATGQPKYHRGFEPLVP-GFVYVDYNDAGALERTVRRINFWGRLRGWLPGKKRRGVAAILMEALQGEGGIRPGSRSFFAKARALCDETGALLMVDEVQTGV 301          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: A0A651E731_9CYAN (Acetylornithine aminotransferase n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A651E731_9CYAN)

HSP 1 Score: 313 bits (802), Expect = 8.400e-102
Identity = 153/247 (61.94%), Postives = 188/247 (76.11%), Query Frame = 1
Query:  166 TSSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            T+  P T D F+ YV +TYGR+PL + RGEGC+++D+DG+EYLDFVAGI+TC LGHA P +V A+  Q++  HHVSNLYY+P QGQLA+WLV++SCADR FFCNSGAEANE  IKLARK+A T LGI EPVI+TA+ SFHGRTLAT+TATGQP YQKNF PLVP GF Y  YND   L++ +  +++            R VAAIM+EALQGEGGV P    +F  VRELCD+ G L+I+DEVQVG+
Sbjct:   12 TAQIPFTSDGFDQYVMSTYGRFPLALERGEGCRVWDTDGREYLDFVAGIATCTLGHAHPAMVEAISQQIRTLHHVSNLYYVPSQGQLAQWLVEHSCADRAFFCNSGAEANEGAIKLARKYAHTVLGIEEPVILTAQASFHGRTLATVTATGQPKYQKNFSPLVP-GFHYVPYNDIPALEQAIADLDQ----------GERRVAAIMLEALQGEGGVRPGDLAYFQRVRELCDQKGILLILDEVQVGM 247          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: A0A2W4WM48_9CYAN (Aspartate aminotransferase family protein (Fragment) n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4WM48_9CYAN)

HSP 1 Score: 307 bits (787), Expect = 8.840e-102
Identity = 149/237 (62.87%), Postives = 182/237 (76.79%), Query Frame = 1
Query:  196 FNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            F+ +V  TYGR+P+ + RGEGC+++DS+G+EYLDFVAGI+TCALGHA P +V AV  Q++K HHVSNLYYIPEQG LA+WL  NSCADR FFCNSGAEANE  IKLARK+  T+LGIA P+I+TA  SFHGRTLAT+TATGQP YQKNF PL+P GF Y  YND E LK  +  ++            +R VAAIM+E +QGEGGV P  P +F  VR+LCD+TG L+I+DEVQVG+
Sbjct:   35 FDQHVMATYGRFPIALERGEGCRVWDSNGREYLDFVAGIATCALGHAHPQMVEAVTAQIRKLHHVSNLYYIPEQGALAEWLTANSCADRAFFCNSGAEANEGAIKLARKYGHTELGIAAPMIITAHDSFHGRTLATLTATGQPKYQKNFDPLMP-GFYYVPYNDIEALKAAIATLDA----------DQRQVAAIMLEPMQGEGGVCPGNPVYFKQVRQLCDQTGILLILDEVQVGM 260          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: A0A0P8BHB9_9CYAN (Acetylornithine aminotransferase n=1 Tax=Phormidesmis priestleyi Ana TaxID=1666911 RepID=A0A0P8BHB9_9CYAN)

HSP 1 Score: 312 bits (799), Expect = 4.670e-101
Identity = 153/249 (61.45%), Postives = 189/249 (75.90%), Query Frame = 1
Query:  160 ASTSSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            +ST+ A    D F+ +V +TYGR+P+ + RGEGC+++DS+GK YLDFVAGI+TC LGHA P +V AV  Q+KK HHVSNLYYIPEQG LA+WL  NSCADRVFFCNSGAEANE  IKLARK+  T+LGI  PVI+TA+ SFHGRTLAT+TATGQP YQKNF PLVP GF Y  YND E L+  ++ ++            +R VAAI++E +QGEGGV P  P +F  VR+LCDETG L+++DEVQVG+
Sbjct:   34 SSTTQADFQPDVFDQHVMSTYGRFPIALERGEGCRVWDSNGKAYLDFVAGIATCTLGHAHPAMVEAVTTQIKKLHHVSNLYYIPEQGALAEWLTANSCADRVFFCNSGAEANEGAIKLARKYGHTELGIDAPVIITAQASFHGRTLATVTATGQPKYQKNFNPLVP-GFYYVPYNDIEALRTAIRELDAE----------QRQVAAILLEPMQGEGGVCPGNPVYFKQVRQLCDETGILLMLDEVQVGM 271          
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Match: UPI0019A93AFB (Aminotransferase class III-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Leptolyngbyaceae cyanobacterium LF-bin-369 TaxID=2804781 RepID=UPI0019A93AFB)

HSP 1 Score: 306 bits (783), Expect = 5.550e-101
Identity = 157/255 (61.57%), Postives = 188/255 (73.73%), Query Frame = 1
Query:  145 PTPSTAST-SSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDFVAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNSCADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLATMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQVGL 906
            P+PS  ST SS+P     F+ YV  TYGR+PLT+VRGEGC+++D   + YLDFVAGI+TC LGHA+P +V A   QM+  HHVSNLYYIP+QG+LA+WLV++SCA+RVFFCNSGAEANE  IKLARK A  K GI  PVI+TA  SFHGRTLAT+TATGQP YQKNF PLVP GF Y  YND   L+  +  ++R G            VAAIMMEALQGEGGV P    +F  VR++CDETG L+I+DEVQVG+
Sbjct:    8 PSPSFTSTESSSPFDTGLFDEYVMATYGRFPLTLVRGEGCRVWDDRNQPYLDFVAGIATCTLGHANPVMVEAATRQMQTLHHVSNLYYIPQQGELAQWLVEHSCANRVFFCNSGAEANEGAIKLARKQAHVKRGIENPVIITAHASFHGRTLATITATGQPKYQKNFAPLVP-GFHYVPYNDITALELAIADLDRNGP----------QVAAIMMEALQGEGGVNPGDRAYFQRVRDICDETGILLILDEVQVGM 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15357.4023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G583_ECTSI5.770e-20497.02Acetylornithine transaminase n=2 Tax=Ectocarpus Ta... [more]
A0A835ZAE5_9STRA4.960e-12867.73Acetylornithine transaminase n=1 Tax=Tribonema min... [more]
A0A6V1MZH1_HETAK1.820e-10464.17Acetylornithine transaminase n=1 Tax=Heterosigma a... [more]
A0A6U1PT46_9STRA6.960e-10465.83Acetylornithine transaminase n=1 Tax=Fibrocapsa ja... [more]
A0A2W4U0S4_9CYAN1.280e-10361.45Acetylornithine aminotransferase n=1 Tax=Leptolyng... [more]
K8YRG0_NANGC5.870e-10265.97Acetylornithine transaminase n=3 Tax=Monodopsidace... [more]
A0A651E731_9CYAN8.400e-10261.94Acetylornithine aminotransferase n=3 Tax=Cyanobact... [more]
A0A2W4WM48_9CYAN8.840e-10262.87Aspartate aminotransferase family protein (Fragmen... [more]
A0A0P8BHB9_9CYAN4.670e-10161.45Acetylornithine aminotransferase n=1 Tax=Phormides... [more]
UPI0019A93AFB5.550e-10161.57Aminotransferase class III-fold pyridoxal phosphat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15357contigEcto-sp13_S_contig15357:154..3461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score575.1
Seed ortholog evalue1.9e-161
Seed eggNOG ortholog2880.D7G583
Model size906
KEGG rclassRC00006,RC00062
KEGG koko:K00818
KEGG ReactionR02283
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
Hectar predicted targeting categorychloroplast
Exons7
EggNOG free text desc.N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EggNOG OGsCOG4992@1,KOG1401@2759
Ec32 ortholog descriptionacetylornithine aminotransferase
Ec32 orthologEc-14_006580.1
EC2.6.1.11
Cds size906
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15357.4023.1prot_Ecto-sp13_S_contig15357.4023.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15357 154..3461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.0080597-CDS-Ecto-sp13_S_contig15357:153..2611681462817.0080597-CDS-Ecto-sp13_S_contig15357:153..261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15357 154..261 -
1681462817.025951-CDS-Ecto-sp13_S_contig15357:780..9201681462817.025951-CDS-Ecto-sp13_S_contig15357:780..920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15357 781..920 -
1681462817.0394576-CDS-Ecto-sp13_S_contig15357:1297..14451681462817.0394576-CDS-Ecto-sp13_S_contig15357:1297..1445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15357 1298..1445 -
1681462817.052881-CDS-Ecto-sp13_S_contig15357:2022..21151681462817.052881-CDS-Ecto-sp13_S_contig15357:2022..2115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15357 2023..2115 -
1681462817.0662088-CDS-Ecto-sp13_S_contig15357:2563..26951681462817.0662088-CDS-Ecto-sp13_S_contig15357:2563..2695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15357 2564..2695 -
1681462817.0795486-CDS-Ecto-sp13_S_contig15357:2944..31091681462817.0795486-CDS-Ecto-sp13_S_contig15357:2944..3109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15357 2945..3109 -
1681462817.0897374-CDS-Ecto-sp13_S_contig15357:3341..34611681462817.0897374-CDS-Ecto-sp13_S_contig15357:3341..3461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15357 3342..3461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15357.4023.1

>prot_Ecto-sp13_S_contig15357.4023.1 ID=prot_Ecto-sp13_S_contig15357.4023.1|Name=mRNA_Ecto-sp13_S_contig15357.4023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp
MMFAALIAGAFVVGGTDGFAASSSAFSGGNMLHHAPRSSQVFSMVSTPPT
PSTASTSSAPLTQDQFNAYVQNTYGRYPLTIVRGEGCKLFDSDGKEYLDF
VAGISTCALGHADPDLVAAVGDQMKKFHHVSNLYYIPEQGQLAKWLVDNS
CADRVFFCNSGAEANEAGIKLARKHASTKLGIAEPVIVTAKKSFHGRTLA
TMTATGQPNYQKNFGPLVPAGFEYATYNDPEDLKRVVKRINRRGKIRSIF
GRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQV
GL
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mRNA from alignment at Ecto-sp13_S_contig15357:154..3461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15357.4023.1 ID=mRNA_Ecto-sp13_S_contig15357.4023.1|Name=mRNA_Ecto-sp13_S_contig15357.4023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15357:154..3461- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTTTGCAGCGTTGATCGCCGGAGCTTTCGTAGTCGGCGGGACCGA TGGCTTCGCAGCCTCGTCATCCGCATTCTCGGGGGGCAACATGCTCCACC ATGCTCCTCGATCTTCCCAGGTATGCCGCTGCTGTCCCGGCTGCTGCTGG GCTTCCAATAACGTACTGGAAGTACTCCATCGCTGTCGCTGTTGTGAGTC TCGCTGTGCTGCAGATGCACATGTCGCGGCGTTTTTTGACACCAGCAGCA GTATCGCAGGTGATACCGTCGACATTCGAGCATGTTCCAACGTTGGTTTG AACCAACCAGCACACTCCATCTCTCTTCTACGCGTCTCTGTCGTCGCTGC AGGTCTTCTCCATGGTTTCTACCCCCCCGACGCCATCCACCGCCAGCACT TCGAGCGCTCCACTGACACAAGACCAGTTCAATGCCTACGTGCAGAACAC GTACGGCAGGTACCCGCTCACTATCGTGCGAGGCGAAGGTTGCAAGCTCT TCGACTCCGACGGCAAGGTACGGCGGTACCGAGTCATGCTGGAGAGGTGG ACGCATGGATCGGTATCCGTGTGTGGATTTGTCTTGCATAGTCTGGTCTC TTATAATTGCCAAACTTAGACGTCTGTGAGTCCAAAGCCTGCAGCGATAC CTGAAACATGCACGTTGGCAACCTTCCTGTTTCAAGGAGTAAATGCGTCT CACATTCTCTCTGCCCAACGGCGGCGCGCTGCTCTGTCGGCCGTCTTTTC CTGACTCTTTTTGTAGGAGTACCTTGATTTTGTGGCCGGCATCTCGACGT GCGCTCTCGGGCATGCAGACCCTGACCTCGTAGCAGCGGTGGGAGATCAG ATGAAGAAGTTTCATCACGTCAGCAATCTCTACTACATCCCGGAGCAGGT ACAGAAATGTTTAATGTTTGACGGCCAGGTACTGCATGCATGTACTACGC CTCTATTTTTGCTTTCAAACGAAGACGGCAGGGCTGTTAATCGTAGTCGT GGGTTTGCGATGAAGGTGTTGGTTGGATCAGCCAGAGGATAATGCACGGG GTGAGGGAGAGAACGGATTTGAAGATTTTTCAGAGGGTTTCCTGGCACAA TGAAGGAATGAAGTGTTTTTGTCGCCGATCCGCGCTTGCTTGCTCAGCTT GCTCTCACGTTCCATACAGACCCGTATCTGCAAGGGGGCTTGTGCATGTT AATAACGTTCTCGTAGTCTTGTCGAACTATGTCCGATGTCGGTGTTGGTT TGGAGCAACCAATGCTCAAACAGCATGACAACAGGAGAGACACATGTACC GAATAACAACTCGCATTACCGTCCGTGTTGCGCCACGTCGAGACAGGGCC AATTGGCCAAGTGGCTGGTGGACAACAGCTGCGCTGACCGCGTGTTCTTC TGCAACTCCGGAGCCGAAGCTAACGAGGCAGGCATCAAGGTACAGTACTC ATTTTCCCCTTTCAATTACTTTTTCTCTTGTCTTACGCCGGTACAAGGCG CTACAATTCCCACGCATGTGCTGCGCAAATGGTCAGCGACCGCAGTGCGA CCACATTCTTCCGTGTCCTTCGTTTACTGTGCCATGCCGCCCGTTTGTGT TTGATTTCGAAAGGACGGGTTATCTGTGGTAACCGTTTTCACCCTCAGGA TGCGGGTGCGGACGTCGATCCCTCCCATGGATTACTGTTCGCCACAAGCA CAAAATACGCGGCGTGCAACAGACGCGATCGCTGCACTTCACCAAGCGCT TCAGGGGCACCTTCCTTGCGTCTTAACCCCCTCCCCCCCCCCCCCCCCTC CCAACCCCCAACCATCTCTTTTTTTTTTTTTCTCCTTTCTAGATTTTTCC CCCCTCCCCCTTCCNNNNNNNNNNAAAGCCCCGGATCCTTGCCTTCCCCC AAGCCTTTCAGGGGCCCCTTTCTTGCGTTTTACCCCCCCCCCCCCCCCCC CCGGTGGCAAATCGCGAAATGTCTTTCTTTTTTTGCTGCCTCGTATCGAC GTTTCACCCCCTTAAGCTTGCCCGGAAACACGCCAGCACCAAGCTGGGCA TTGCCGAGCCGGTCATCGTTACCGCCAAGAAGTCTTTCCACGGCCGGACG CTAGCCACGATGACCGCCACGGGTCAGCCCAACTACCAGAAGAACTTTGG CCCGCTTGTACCAGGTCAGGCACCGTGCGGCCTACAGCCGTGCATGCTCA GGGCCGCTTCTCCCTGTTGTATGTGTTGCCCCAGTCACCGCCAAGCGTCC CGGGGGGGCATGCGGTGGTACTGTAATACTGTACACACTTTTCGGGTTGG CGTAGGTTTATTATTGTGGTAAGCGCCGTGTAGCACGCAACTCGGTTAGT AGGTGCCGCTGGCTGTCCTGCACCGTCTCGTGGTACTGCTGTATTGTACA AATGATATGTGCAAGTGGAACCGTTTTCCCGTCGTCGCGAAAGAAGTTTT TTGCTAAATGCGAAATCCTCGTGAGGGGCGATGGGTTTCTCTCTTTGTGT GACCGCTCTCCTTCCGAAACGGCGCCATTGGTCGTGGCAAGCAGGTTTCG AGTACGCCACGTACAACGACCCGGAAGACCTGAAGCGAGTAGTCAAGCGC ATCAACCGGCGGGGTAAGATCCGGTCCATCTTCGGCCGACCCCGTCGGGC AGTCGCGGCGATCATGATGGAGGCGTTGCAGGTGAGAGGGGTAACACGAT TGGTACTTACAGCAGTACAAAATACTAATGACTGACAGTGAGCATTCCAA CAATCTCATATATCTATATACAAACAGGCAACTAGCATATCTTCGTCGGT CAAGATGCACCCGGCCAGGATCGACCGTGGGTTGTTCATGTGTATTCAGC AAAGAGTACAGAAGCGGTCCCGTGGTGTGGCCCCCTCACCTCAGTGTAGC TTCTCGCGGGGCGGCTGACAGCTGCCTTGGTCACCTACCCACGCCTGAAC TTCACGGTTTCCAGCCTGATTTTGACCAGGTGGTGGCCAGACTATTGTGT AGAACAGCTGGCACTTTGACTTTGAGCGAGAGAGTCTCGTTTGGTTCACC GAAGCTTCAAGAGCGGAAGCACGAGGTGTTCCCCTCTTTGCTGGCTATCA GCACGTTCCTCCGTGGGTACCAAACAGCAATCGAGTCCAAATTGTGCAAA AAATTCCGTCCTCCTGATGATGAATGTGTCTTCCGGGTGGATGGTGTCAG GGAGAAGGAGGAGTGGTGCCGGCGACTCCGGAGTTTTTCTCGACAGTGCG CGAGCTTTGCGACGAGACCGGCGCCCTGATGATTGTCGACGAAGTCCAGG TAGGGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15357:154..3461-

>mRNA_Ecto-sp13_S_contig15357.4023.1 ID=mRNA_Ecto-sp13_S_contig15357.4023.1|Name=mRNA_Ecto-sp13_S_contig15357.4023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15357:154..3461- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTTTGCAGCGTTGATCGCCGGAGCTTTCGTAGTCGGCGGGACCGA
TGGCTTCGCAGCCTCGTCATCCGCATTCTCGGGGGGCAACATGCTCCACC
ATGCTCCTCGATCTTCCCAGGTCTTCTCCATGGTTTCTACCCCCCCGACG
CCATCCACCGCCAGCACTTCGAGCGCTCCACTGACACAAGACCAGTTCAA
TGCCTACGTGCAGAACACGTACGGCAGGTACCCGCTCACTATCGTGCGAG
GCGAAGGTTGCAAGCTCTTCGACTCCGACGGCAAGGAGTACCTTGATTTT
GTGGCCGGCATCTCGACGTGCGCTCTCGGGCATGCAGACCCTGACCTCGT
AGCAGCGGTGGGAGATCAGATGAAGAAGTTTCATCACGTCAGCAATCTCT
ACTACATCCCGGAGCAGGGCCAATTGGCCAAGTGGCTGGTGGACAACAGC
TGCGCTGACCGCGTGTTCTTCTGCAACTCCGGAGCCGAAGCTAACGAGGC
AGGCATCAAGCTTGCCCGGAAACACGCCAGCACCAAGCTGGGCATTGCCG
AGCCGGTCATCGTTACCGCCAAGAAGTCTTTCCACGGCCGGACGCTAGCC
ACGATGACCGCCACGGGTCAGCCCAACTACCAGAAGAACTTTGGCCCGCT
TGTACCAGCAGGTTTCGAGTACGCCACGTACAACGACCCGGAAGACCTGA
AGCGAGTAGTCAAGCGCATCAACCGGCGGGGTAAGATCCGGTCCATCTTC
GGCCGACCCCGTCGGGCAGTCGCGGCGATCATGATGGAGGCGTTGCAGGG
AGAAGGAGGAGTGGTGCCGGCGACTCCGGAGTTTTTCTCGACAGTGCGCG
AGCTTTGCGACGAGACCGGCGCCCTGATGATTGTCGACGAAGTCCAGGTA
GGGTTG
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