mRNA_Ecto-sp13_S_contig15353.4021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15353.4021.1
Unique NamemRNA_Ecto-sp13_S_contig15353.4021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15353.4021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15353contigEcto-sp13_S_contig15353:3501..4057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size557
Hectar predicted targeting categorysignal peptide
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.908422-UTR-Ecto-sp13_S_contig15353:3500..37031681462816.908422-UTR-Ecto-sp13_S_contig15353:3500..3703Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15353 3501..3703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.9195635-CDS-Ecto-sp13_S_contig15353:3703..40571681462816.9195635-CDS-Ecto-sp13_S_contig15353:3703..4057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15353 3704..4057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15353.4021.1prot_Ecto-sp13_S_contig15353.4021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15353 3704..4057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15353.4021.1

>prot_Ecto-sp13_S_contig15353.4021.1 ID=prot_Ecto-sp13_S_contig15353.4021.1|Name=mRNA_Ecto-sp13_S_contig15353.4021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MSMMLLLFRVPCIASPLVPGSCTVVIVYSSVLTFCKAFPTERACTQELVL
GRSCFLFSLGGMHIDIFVLRCNPSLSTCPCCRFMFLIYLGQLPINLWSGD
AHFASKYTSLIGRKRRS*
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mRNA from alignment at Ecto-sp13_S_contig15353:3501..4057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15353.4021.1 ID=mRNA_Ecto-sp13_S_contig15353.4021.1|Name=mRNA_Ecto-sp13_S_contig15353.4021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=557bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15353:3501..4057+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTTCATTGCATGGCAGCGTTGCTGACGACAACGAATCCAGTAAACTAG
AGGGGGTCATGTGGGAAAAACAAAAAGTAGAAACAAGCACACCCGCCTGC
AAAAATGGATAGTACGTTAGTTGTTGTTTGCTGCCCGCGGGGATCGAGGG
CTGCCAACATTGGGAAAGATCTATTGAAGAAGTATGTGAGAGTTTAAGGA
CGTATGTCGATGATGTTGTTGCTCTTTCGAGTCCCGTGCATTGCCTCACC
CTTGGTCCCGGGATCGTGTACAGTAGTGATCGTGTACAGTAGTGTCTTGA
CCTTTTGTAAAGCTTTCCCTACTGAACGCGCCTGCACTCAAGAACTCGTG
CTTGGCCGAAGCTGTTTCCTTTTTTCGCTGGGGGGTATGCACATCGACAT
ATTTGTTCTACGTTGCAATCCTTCATTGAGCACCTGTCCTTGCTGTCGAT
TTATGTTTCTGATCTATTTAGGCCAACTGCCAATTAATTTATGGAGCGGT
GACGCTCACTTTGCAAGTAAATACACAAGTTTAATAGGGAGAAAGAGACG
ATCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15353:3501..4057+

>mRNA_Ecto-sp13_S_contig15353.4021.1 ID=mRNA_Ecto-sp13_S_contig15353.4021.1|Name=mRNA_Ecto-sp13_S_contig15353.4021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15353:3501..4057+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGATGATGTTGTTGCTCTTTCGAGTCCCGTGCATTGCCTCACCCTT
GGTCCCGGGATCGTGTACAGTAGTGATCGTGTACAGTAGTGTCTTGACCT
TTTGTAAAGCTTTCCCTACTGAACGCGCCTGCACTCAAGAACTCGTGCTT
GGCCGAAGCTGTTTCCTTTTTTCGCTGGGGGGTATGCACATCGACATATT
TGTTCTACGTTGCAATCCTTCATTGAGCACCTGTCCTTGCTGTCGATTTA
TGTTTCTGATCTATTTAGGCCAACTGCCAATTAATTTATGGAGCGGTGAC
GCTCACTTTGCAAGTAAATACACAAGTTTAATAGGGAGAAAGAGACGATC
ATAG
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