mRNA_Ecto-sp13_S_contig15350.4020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15350.4020.1
Unique NamemRNA_Ecto-sp13_S_contig15350.4020.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15350.4020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15350contigEcto-sp13_S_contig15350:3055..3983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.8616931-CDS-Ecto-sp13_S_contig15350:3054..31831681462816.8616931-CDS-Ecto-sp13_S_contig15350:3054..3183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15350 3055..3183 +
1681462816.8717132-CDS-Ecto-sp13_S_contig15350:3857..39831681462816.8717132-CDS-Ecto-sp13_S_contig15350:3857..3983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15350 3858..3983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15350.4020.1prot_Ecto-sp13_S_contig15350.4020.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15350 3055..3983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15350.4020.1

>prot_Ecto-sp13_S_contig15350.4020.1 ID=prot_Ecto-sp13_S_contig15350.4020.1|Name=mRNA_Ecto-sp13_S_contig15350.4020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
QGKFGQARPLFERFLAIVEKDEGSDHPRVASLLGNWAGLLSSHGKSKEAA
PLLERSLAIRENSLGPDHPDVATSLKNLAVLLHSQ
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mRNA from alignment at Ecto-sp13_S_contig15350:3055..3983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15350.4020.1 ID=mRNA_Ecto-sp13_S_contig15350.4020.1|Name=mRNA_Ecto-sp13_S_contig15350.4020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=929bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15350:3055..3983+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCAAGTTTGGGCAAGCCAGGCCGTTGTTTGAACGTTTCCTTGCTAT
CGTGGAAAAGGATGAAGGATCTGATCACCCTCGCGTGGCGTCGTTGCTCG
GCAATTGGGCGGGCTTGTTGAGTTCCCACGTGAGAGCGGTCCAAACCGTA
CACAACACGGGATACGTCAATGATTCCGAGTTGAATGTATTATGTTATGG
GGTGTGGTTAGCTACCCCAAGCAGAACAAGCTCCGAAGTTGAGTGTCATG
CTGATATCTAGCTTACGCATCGCTTCTAGAGGCGCTTTGAGCGACCTCGT
TTATTTTTTGAAACTCGCACACCGACACGTGGTGGGAACTTCTCGGGGGC
ACCACTTGGGAAGAGTTGGTTCAAGCGATTACGATCGGCAACTGCCTCAC
GGCAATCGGGCTGGTAGCTGATATGCTCTTCTACGCAATTCGATCTAGAT
CCAACCTTGACTGCAGTACGCCTCTGCCGCGCTGCCCCACTGCACTTCAG
GGCCAATACGCTGAGGCTGAGCCGCTCTACGCGCGGTGTCAGGCGATAGA
AGAGGATGTTCTAGGTCTTGAGCACCCTAGCCTGGCCATGACCCTCAGCA
ACCGGGCGAGCGCTTTGTTTAGCCAGGTACATGTTCAAATTTTCCGAGAA
ATTTCTTGACGTGCTCGGCGGTTTTGCTGAAAATACAGACGAGGAGCTGT
CACATTTTTTCCGACCTAATGTTCGGCCGTGTTTGTTGTCGTGCTTCCTC
CGCAATAGCCCGGATCCCACCTCACTCGCCATGTGCTTTTTCCCACATTC
CAGGGCAAGAGTAAGGAAGCCGCGCCGCTGTTGGAACGCTCTCTTGCCAT
CCGCGAAAACTCTCTTGGACCTGACCACCCTGACGTAGCCACATCGCTCA
AAAACCTGGCGGTCTTGTTGCACAGCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15350:3055..3983+

>mRNA_Ecto-sp13_S_contig15350.4020.1 ID=mRNA_Ecto-sp13_S_contig15350.4020.1|Name=mRNA_Ecto-sp13_S_contig15350.4020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15350:3055..3983+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCAAGTTTGGGCAAGCCAGGCCGTTGTTTGAACGTTTCCTTGCTAT
CGTGGAAAAGGATGAAGGATCTGATCACCCTCGCGTGGCGTCGTTGCTCG
GCAATTGGGCGGGCTTGTTGAGTTCCCACGGCAAGAGTAAGGAAGCCGCG
CCGCTGTTGGAACGCTCTCTTGCCATCCGCGAAAACTCTCTTGGACCTGA
CCACCCTGACGTAGCCACATCGCTCAAAAACCTGGCGGTCTTGTTGCACA
GCCAG
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