mRNA_Ecto-sp13_S_contig15344.4017.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15344.4017.1
Unique NamemRNA_Ecto-sp13_S_contig15344.4017.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15344.4017.1 vs. uniprot
Match: D8LQC6_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC6_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 5.960e-58
Identity = 253/298 (84.90%), Postives = 254/298 (85.23%), Query Frame = 1 
Query:    1 DEEEFGAISMPTPTAGDAATEAGNGTAAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAA-AEAMRLAKRVERFGRIAPVTESEVAEKMXXXXXXXXXXXXXXGGKQGTKRSLNSEEEAKRKKRMERFGIVDEKEEAAKRAEAEAXXXXXXXXXXXXXXXXXXXXXXVAAKVAWLASEQAEKKAKRIARFGEDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGRGSXXXXXXXRERXXXXXXXXXXXXXXXXXXXGGAVSATAMLSQGLKSSR 891
            DEEEFGAISMPTPT GDAATEAGNGTAAEP         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AEAMRLAKRVERFGRIAPVTESEVAEKM              GGKQGTKRSLN EEEAKRKKRMERFGIVD+KEEAAKR EAEAXXXXXXXXXXXXXXXXXXXXXX     AWLASEQAEKKAKRIARFGEDTT   XXXXXXXXXXXXXXXXXXXXXX  RSGRGS  XXXXXRERXXXXXXXXXXXXXXXXXXX G VSATAMLSQGLKSSR
Sbjct:   41 DEEEFGAISMPTPTVGDAATEAGNGTAAEPPAEPAVEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDDKEEAAKRTEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLASEQAEKKAKRIARFGEDTTAVAXXXXXXXXXXXXXXXXXXXXXX--RSGRGSGGXXXXXRERXXXXXXXXXXXXXXXXXXXXGPVSATAMLSQGLKSSR 336
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15344.4017.1 vs. uniprot
Match: A0A6H5KM35_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM35_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.600e-40
Identity = 144/166 (86.75%), Postives = 144/166 (86.75%), Query Frame = 1 
Query:    1 DEEEFGAISMPTPTAGDAATEAGNGTAAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAEAMRLAKRVERFGRIAPVTESEVAEKMXXXXXXXXXXXXXXGGKQGTKRSLNSEEEAKRKKRMERFGIVDEKEEAAKRAEAE 498
            DEEEFGAISMPTPT GDAATEAGNGTAAEP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AEAMRLAKRVERFGRIAPVTE EVAEKM              GGKQGTKRSLN EEEAKRKKRMERFGIVDEKEEAAKRAEAE
Sbjct:   41 DEEEFGAISMPTPTVGDAATEAGNGTAAEPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTEREVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDEKEEAAKRAEAE 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15344.4017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQC6_ECTSI5.960e-5884.90SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KM35_9PHAE1.600e-4086.75SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15344contigEcto-sp13_S_contig15344:2..2379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size894
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-10_005130.1
Cds size867
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15344.4017.1prot_Ecto-sp13_S_contig15344.4017.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15344 29..2379 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.6876068-UTR-Ecto-sp13_S_contig15344:1..281681462816.6876068-UTR-Ecto-sp13_S_contig15344:1..28Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15344 2..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.7002609-CDS-Ecto-sp13_S_contig15344:28..641681462816.7002609-CDS-Ecto-sp13_S_contig15344:28..64Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15344 29..64 +
1681462816.7112167-CDS-Ecto-sp13_S_contig15344:242..3081681462816.7112167-CDS-Ecto-sp13_S_contig15344:242..308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15344 243..308 +
1681462816.719166-CDS-Ecto-sp13_S_contig15344:883..11231681462816.719166-CDS-Ecto-sp13_S_contig15344:883..1123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15344 884..1123 +
1681462816.7269795-CDS-Ecto-sp13_S_contig15344:1434..15631681462816.7269795-CDS-Ecto-sp13_S_contig15344:1434..1563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15344 1435..1563 +
1681462816.7349155-CDS-Ecto-sp13_S_contig15344:1983..23791681462816.7349155-CDS-Ecto-sp13_S_contig15344:1983..2379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15344 1984..2379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15344.4017.1

>prot_Ecto-sp13_S_contig15344.4017.1 ID=prot_Ecto-sp13_S_contig15344.4017.1|Name=mRNA_Ecto-sp13_S_contig15344.4017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=289bp
MPTPTAGDAATEAGNGTAAEPAEPAVEATPAATAEEATPAAQAEPGSTTA
DGEVAADTATAAPVVVTATDAAAAAEAMRLAKRVERFGRIAPVTESEVAE
KMAMRREKFGLSEPATGGKQGTKRSLNSEEEAKRKKRMERFGIVDEKEEA
AKRAEAEAAKRAARQEKFGYVNPDAEKKAKVAAKVAWLASEQAEKKAKRI
ARFGEDTTAAAATPKSTTPQQSSGKKGGGSGGGGGRSGRGSGGGKGGGRE
RGGRNRRQSGGGGGDGRGRGGGAVSATAMLSQGLKSSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig15344:2..2379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15344.4017.1 ID=mRNA_Ecto-sp13_S_contig15344.4017.1|Name=mRNA_Ecto-sp13_S_contig15344.4017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15344:2..2379+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAGGAAGAGTTTGGCGCTATCAGCATGCCTACACCGACCGCCGGCGA
TGCTGCAACCGAGGTTTGTGGCATCGTTTTGATAACAAACGTCTCTCCTG
CTGCGCGAACGTCGCCAGTATGCACTCGTACATATCCAATTTGCGGTGTT
TTTTGCGTAAGTTGTCATGTGACCTAACTAGTCAGCAGACTCGCCGGTCC
TCTAATCTTGCAATCTTCCGCACACCCGTGTACGAATGCAGGCGGGAAAT
GGAACCGCGGCAGAGCCGGCAGAACCTGCGGTGGAAGCCACGCCTGCGGC
AACCGCCGTGAGTGTTTCCTATCTTTTCACCACTCCCTGCATTCGATGCC
CACAGGGACTACTGCTGCTGTACTGCTGCTGCTGTCTACAGCTTCAGAAG
AGCAACAGCGCGAACTTTGCTGTGCGCCTAGAGGACCGTATACTGTGTGT
TGGCACAGGCTCCTCAAGCGGCCAGGCTACCAAGTGATGCAGCTGTTGTT
GTTTTGTTATTGCTGTGTATACATTCGAACCGCGCTGACCTCTTCCCATC
GGTGGCTCTTGTTCCCGTCCCCTTCAAGGCAGAAAACAAACTTCCATGAC
CTCGACCTTGCAGCATTATTTCGCAACAGAAACCCACGCCACCCGTGTAC
TACTCCTTCTTTGCGTCGCAGGCAACGTGACCTAACATAAACAGGTCTCG
GTGAACGCTTCGAGGTGTGGGTGTGCAGTTGCAAAAGTCGTGAATATTGC
AACGCTCCGGCGGCACGGGCGAGAGAGCGGATACCTCTGCCCAGGGTAAA
AAAACAGCGCGTCTCATCTACAGCACTACTCGCGCGAGATGTCCGACTCC
AATTTTCCATTGCCTGTGCCACGAACGAGCAGGAGGAGGCGACACCCGCC
GCCCAGGCAGAACCCGGTTCTACTACGGCTGACGGTGAGGTTGCTGCTGA
CACAGCTACCGCCGCTCCTGTTGTCGTCACCGCCACGGATGCTGCCGCCG
CTGCGGAAGCCATGCGGCTGGCGAAGCGCGTGGAGAGGTTTGGCCGCATC
GCTCCGGTGACTGAGAGCGAGGTGGCGGAGAAGATGGCCATGCGCCGGGA
GAAGTTCGGCCTGTCGGAGCCGGTGAGTGCCGCGGTGCGGCGAAATACGT
GCCGTTTGGGTGCGGTTGGAGATCTTGAGGGATGGAGCGCTCACAGCAGT
GGGGTGATGTGATGGAGCGAAAAATACCAGGAGGGGAGGGGGGGAGTACG
AGGGGAGGTTGTCCAGCAAAAAAATCGGTTTCAAGGTTCTTGTTTGGCGG
CCATCTCTTGTGGGCGGAAGAACTAGACGACTTCGCAACGGTTCTCGGGT
TTTCGTTCGTGTGTCGATTCCCTTTACTGCCCACTTCGGTATCTATCCGA
CCCGCAACACGGGCACGCTTTGTTTGCTTGCAGGCGACGGGCGGTAAGCA
AGGCACCAAGAGGTCGCTCAACTCCGAGGAGGAGGCCAAGAGGAAAAAAC
GCATGGAACGGTTCGGCATCGTCGATGAAAAGGAGGAGGCCGCCAAGAGA
GCCGAAGCCGAGGTGAGTTTTTTTTCCCCGTTGGTTGGTGTTTGCTGATC
TTGGTGGGAGTGTGATGTTGCCGTCTTTGAAGCTGGCGCATGATTTTTCT
CTTCCCTCCGCTCGCACGGTCTCGCCAGAATGTTTTGCCGTTTGATGCCA
GTTGCCCAGTGTTCATAAGTGTACGCCACCCCGCCACCGGGCCCGCTCGA
TGATCTCGCGGTCATCGCTTCCCCTGAAGGCGCGTGGTGCCTGCCCATGT
TGAAGATAGTTGGTGTACGGTTCGACTACACTCCGTCGTCGTCCGCTCTG
TGACACAAGTCTGCATCGTTTCCTCACCCTGTGTGTCACTCGTTCGTCTG
ACCGGACCCAGCTCCTAGTATGTTAGCGTCGTGTCCACTTCTCACTCTTT
CCCGCGATCTCTCGCCCCCCCCTCTCCTGAAGGCCGCCAAGCGGGCCGCA
CGCCAGGAAAAGTTCGGCTACGTGAACCCCGACGCCGAAAAGAAGGCAAA
GGTTGCGGCGAAGGTGGCCTGGCTGGCTTCCGAGCAGGCCGAAAAAAAGG
CGAAGCGTATCGCGCGTTTCGGAGAGGACACCACTGCCGCAGCGGCAACA
CCTAAGTCCACCACCCCTCAGCAGTCTTCGGGTAAGAAGGGCGGCGGCAG
CGGCGGCGGCGGTGGGAGGAGCGGCCGGGGGAGCGGGGGCGGGAAGGGCG
GAGGGCGGGAGAGGGGGGGGAGGAACAGGAGGCAGAGCGGTGGTGGTGGT
GGTGATGGCCGTGGTCGTGGCGGGGGGGCAGTAAGCGCCACAGCGATGCT
GTCCCAAGGCTTAAAATCTTCGCGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15344:2..2379+

>mRNA_Ecto-sp13_S_contig15344.4017.1 ID=mRNA_Ecto-sp13_S_contig15344.4017.1|Name=mRNA_Ecto-sp13_S_contig15344.4017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15344:2..2379+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTACACCGACCGCCGGCGATGCTGCAACCGAGGCGGGAAATGGAAC
CGCGGCAGAGCCGGCAGAACCTGCGGTGGAAGCCACGCCTGCGGCAACCG
CCGAGGAGGCGACACCCGCCGCCCAGGCAGAACCCGGTTCTACTACGGCT
GACGGTGAGGTTGCTGCTGACACAGCTACCGCCGCTCCTGTTGTCGTCAC
CGCCACGGATGCTGCCGCCGCTGCGGAAGCCATGCGGCTGGCGAAGCGCG
TGGAGAGGTTTGGCCGCATCGCTCCGGTGACTGAGAGCGAGGTGGCGGAG
AAGATGGCCATGCGCCGGGAGAAGTTCGGCCTGTCGGAGCCGGCGACGGG
CGGTAAGCAAGGCACCAAGAGGTCGCTCAACTCCGAGGAGGAGGCCAAGA
GGAAAAAACGCATGGAACGGTTCGGCATCGTCGATGAAAAGGAGGAGGCC
GCCAAGAGAGCCGAAGCCGAGGCCGCCAAGCGGGCCGCACGCCAGGAAAA
GTTCGGCTACGTGAACCCCGACGCCGAAAAGAAGGCAAAGGTTGCGGCGA
AGGTGGCCTGGCTGGCTTCCGAGCAGGCCGAAAAAAAGGCGAAGCGTATC
GCGCGTTTCGGAGAGGACACCACTGCCGCAGCGGCAACACCTAAGTCCAC
CACCCCTCAGCAGTCTTCGGGTAAGAAGGGCGGCGGCAGCGGCGGCGGCG
GTGGGAGGAGCGGCCGGGGGAGCGGGGGCGGGAAGGGCGGAGGGCGGGAG
AGGGGGGGGAGGAACAGGAGGCAGAGCGGTGGTGGTGGTGGTGATGGCCG
TGGTCGTGGCGGGGGGGCAGTAAGCGCCACAGCGATGCTGTCCCAAGGCT
TAAAATCTTCGCGGTGA
back to top