mRNA_Ecto-sp13_S_contig15343.4016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15343.4016.1
Unique NamemRNA_Ecto-sp13_S_contig15343.4016.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: D7FHG5_ECTSI (Ubiquitination factor E4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG5_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.250e-40
Identity = 76/79 (96.20%), Postives = 76/79 (96.20%), Query Frame = 3 
Query:   69 IELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQVSA 305
            I LTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQ  A
Sbjct:  494 IRLTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQARA 572
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: A0A0M0KBH4_9EUKA (Putative ubiquitin conjugation factor e4-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KBH4_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 6.320e-25
Identity = 48/98 (48.98%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:    3 LFAGHPVACDHLGPQLLEFFVDIELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQ 296
            +F  HP+A  HL P +++FFVD+E TGSHT  YDK+ +R   +Q+LE+ W    Y++++I +++++ KFVRF NMLINDSIY M+EA+  L++IK  Q
Sbjct:  681 VFHSHPLAQKHLAPAIMQFFVDVEFTGSHTSAYDKYEYRQDMSQILEYFWDTPVYKKTMIGFARNTKKFVRFVNMLINDSIYSMNEALTKLASIKQTQ 778
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: A0A7S0Q3G5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3G5_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 2.590e-23
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = 3 
Query:    3 LFAGHPVACDHLGPQLLEFFVDIELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQV 299
            +F  H +A  HL P L++FFVDIE TGSH+  +DK+ FR    Q+LE+LWTL  Y  +++ +++++A FVRF NMLINDSIY MDEA+  L++I   Q+
Sbjct:  418 IFHTHALAKKHLAPALMQFFVDIEFTGSHSA-HDKYEFRHEMTQILEYLWTLPEYHAAMVGFTRETASFVRFINMLINDSIYSMDEALTKLASIHKTQL 515
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: A0A7S3F2D9_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F2D9_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 5.110e-23
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 3 
Query:   15 HPVACDHLGPQLLEFFVDIELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQV 299
            HP+A   L P +++FFVDIE TGSHT  YDK+ +R    Q+LE+ W    Y+++++ +++D+  FVRF NMLINDSI+ MDEA+  L +IK  QV
Sbjct:   83 HPLAKRFLAPAVMQFFVDIEFTGSHTGAYDKYDYRHEMNQILEYFWQQEDYKQTMVGFARDTKSFVRFVNMLINDSIFSMDEALSKLLSIKKTQV 177
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: A0A6U5EAU0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5EAU0_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 5.370e-23
Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = 3 
Query:    3 LFAGHPVACDHLGPQLLEFFVDIELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQV 299
            +F  H +A  HL P L+ FFVDIE TGSH Q +DK+  R   +Q+L++LWTL  Y  +++ +++D+A FVRF NMLINDSIY MDEA+  L++I   QV
Sbjct:   55 VFHTHALAKQHLAPALMHFFVDIEFTGSH-QPHDKYESRHEMSQILDYLWTLPEYHAAMVAFTRDTAHFVRFINMLINDSIYSMDEALTKLASIHKTQV 152
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: A0A7S4HT75_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HT75_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 3.880e-22
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 3 
Query:   15 HPVACDHLGPQLLEFFVDIELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQ 296
            HP+A   L P +++FFVDIE TGSHT  YDK+ +R    Q+LE+ W    Y+ ++I +++D+ KFVRF NMLINDSI+ MDEA+  L  I+  Q
Sbjct:  114 HPLAKKFLAPAVMQFFVDIEFTGSHTGAYDKYDYRHEMNQILEYFWQHADYKATMIGFARDTTKFVRFVNMLINDSIFSMDEALTKLQNIRKTQ 207
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: A0A7S0HCS4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HCS4_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 3.810e-21
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 3 
Query:    3 LFAGHPVACDHLGPQLLEFFVDIELT-GSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQ 296
            +F  HP+A  HL P++++FFVDIE T G+    Y+K+ FR   AQ+LE+LW    Y  +++ Y++D+ +FVRF NMLINDSIY MDEA+  L  I+  Q
Sbjct:  687 VFHTHPLALRHLAPRVMQFFVDIEFTEGAGGSGYEKYEFRHEMAQILEYLWAQPAYHATMLDYARDAPRFVRFVNMLINDSIYAMDEALSKLKDIRDTQ 785
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: M5BRQ7_THACB (Ubiquitin conjugation factor E4 B n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BRQ7_THACB)

HSP 1 Score: 94.7 bits (234), Expect = 1.780e-20
Identity = 44/99 (44.44%), Postives = 69/99 (69.70%), Query Frame = 3 
Query:    3 LFAGHPVACDHLGPQLLEFFVDIELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQV 299
            LF  HP++  HL P L+ F+V++E TG+ TQFYDKF  R   A +L  +W  + +R+++++ ++ S KFVRFAN+L+ND+ Y +DE +  L+AIK  Q+
Sbjct:  630 LFNSHPLSIQHLLPSLMWFYVEVEQTGASTQFYDKFESRRNIAYILRGIWNNQNHRDTLLKAAEGSDKFVRFANLLMNDATYLLDELLTKLAAIKQLQI 728
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: A0A8H3GLG3_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3GLG3_9AGAM)

HSP 1 Score: 94.7 bits (234), Expect = 1.800e-20
Identity = 44/99 (44.44%), Postives = 69/99 (69.70%), Query Frame = 3 
Query:    3 LFAGHPVACDHLGPQLLEFFVDIELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQV 299
            LF  HP++  HL P L+ F+V++E TG+ TQFYDKF  R   A +L  +W  + +R+++++ ++ S KFVRFAN+L+ND+ Y +DE +  L+AIK  Q+
Sbjct:  630 LFNSHPLSLQHLLPSLMWFYVEVEQTGASTQFYDKFESRRNIAYILRGIWNNQNHRDTLLKAAEGSDKFVRFANLLMNDATYLLDELLTKLAAIKQLQI 728
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BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Match: A0A0B7G216_THACB (Ubiquitin conjugation factor E4 B n=7 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0B7G216_THACB)

HSP 1 Score: 94.7 bits (234), Expect = 1.810e-20
Identity = 44/99 (44.44%), Postives = 69/99 (69.70%), Query Frame = 3 
Query:    3 LFAGHPVACDHLGPQLLEFFVDIELTGSHTQFYDKFTFRSLTAQLLEHLWTLRPYRESIIRYSQDSAKFVRFANMLINDSIYHMDEAVKFLSAIKAAQV 299
            LF  HP++  HL P L+ F+V++E TG+ TQFYDKF  R   A +L  +W  + +R+++++ ++ S KFVRFAN+L+ND+ Y +DE +  L+AIK  Q+
Sbjct:  731 LFNSHPLSIQHLLPSLMWFYVEVEQTGASTQFYDKFESRRNIAYILRGIWNNQNHRDTLLKAAEGSDKFVRFANLLMNDATYLLDELLTKLAAIKQLQI 829
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15343.4016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG5_ECTSI1.250e-4096.20Ubiquitination factor E4 n=1 Tax=Ectocarpus silicu... [more]
A0A0M0KBH4_9EUKA6.320e-2548.98Putative ubiquitin conjugation factor e4-like prot... [more]
A0A7S0Q3G5_9EUKA2.590e-2350.51Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3F2D9_9EUKA5.110e-2349.47Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
A0A6U5EAU0_9EUKA5.370e-2351.52Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S4HT75_9EUKA3.880e-2250.00Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S0HCS4_9EUKA3.810e-2148.48Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
M5BRQ7_THACB1.780e-2044.44Ubiquitin conjugation factor E4 B n=1 Tax=Thanatep... [more]
A0A8H3GLG3_9AGAM1.800e-2044.44Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A0B7G216_THACB1.810e-2044.44Ubiquitin conjugation factor E4 B n=7 Tax=Rhizocto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15343contigEcto-sp13_S_contig15343:28..1729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size318
Hectar predicted targeting categorymitochondrion
Exons3
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.6352015-CDS-Ecto-sp13_S_contig15343:27..991681462816.6352015-CDS-Ecto-sp13_S_contig15343:27..99Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15343 28..99 +
1681462816.6455638-CDS-Ecto-sp13_S_contig15343:799..9321681462816.6455638-CDS-Ecto-sp13_S_contig15343:799..932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15343 800..932 +
1681462816.6554263-CDS-Ecto-sp13_S_contig15343:1617..17271681462816.6554263-CDS-Ecto-sp13_S_contig15343:1617..1727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15343 1618..1727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15343.4016.1prot_Ecto-sp13_S_contig15343.4016.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15343 28..1727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15343.4016.1

>prot_Ecto-sp13_S_contig15343.4016.1 ID=prot_Ecto-sp13_S_contig15343.4016.1|Name=mRNA_Ecto-sp13_S_contig15343.4016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
RSSRGTPWRATTWARSSWNFLLTSSLPAATPSSMTSSPSAASQPSSWNTF
GPSALTGKASSATRRTAQSLFGSLTCSSTTASITWTRRSSSSLPSRPHRL
VHVCV
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mRNA from alignment at Ecto-sp13_S_contig15343:28..1729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15343.4016.1 ID=mRNA_Ecto-sp13_S_contig15343.4016.1|Name=mRNA_Ecto-sp13_S_contig15343.4016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15343:28..1729+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTCTTCGCGGGGCACCCCGTGGCGTGCGACCACCTGGGCCCGCAGCTC
TTGGAATTTTTTGTTGACATCGGTGAGAGATGCTCGTTCTTGTTTTTTTG
AAAATATTCAATGAAAGAAAGACTACCCGTTTGAGATATTATCACAGTCG
AAGAGGATGGATTCCCTCACTGAATTGGGGGGGCAAGTTGCTGAGAGACA
CAGAGTGGAGTACTGCTGTGGGTTTCGGTGGCAACTCGCGTCGATGGAGC
GTTTGGCTTATTTTTTTGTTGTTCAGTTTTTCTCCCAAGAGCACAACACA
TATATCATAGATGGGAGTCCTTATTGGCCTTGTGTGAATAATCGTTAACA
AACATCCTTTTAAGGCCCGTCTAAGAGATCATCATTCTTGATGATGGCCA
GAGACAAGTCTTTTTCGTTGCCCGCCCCCCCCCCGGTACGAGGCATGAAT
AACCAGCAGAAAACGGCAGCTGTACTAGAGTGTAAGACGTGGGCGGAAAA
CGCGGGATTTGCTGTCGATAGGATGGGGAAAACATTTTTGAGCTACCTGT
GGCAAAGTAGTAAAAGAACGATCGGCGGTCCGTGATCGGTCCTGTGGGAA
TAATGCTCCGTCCTGTCGAGGAGGCGTGGTCAAATGTCTAACCAAAAAGG
CATGCAAGACAAAAGAGTCCGCCCCCCCCCCTGGCCAACATACCCTCTTT
TGATCATCCCTGTTTCCCACCACCCCGTTGCTCCTTGCCAAACAAACCGT
GCCTGCTGTTTTTCCTGCGAAGAGCTTACCGGCAGCCACACCCAGTTCTA
TGACAAGTTCACCTTCCGCAGCCTCACAGCCCAGCTCCTGGAACACCTTT
GGACCCTCCGCCCTTACCGGGAAAGCATCATCCGCTACTCGCAGGACAGC
GCAAAGTAAGCGGCCGAGACTGCGTTTTTTTTTCCTCACCTGAGGACAAC
AAATAATTCATCTCAAGAGTCCGGGAAAGGTTAGGAATGCTTGCACGGTA
GTGTTGTATGATGACCGACTTGTATTTCTGCGGTTCCCCGAGCAGCATGT
AGTCTTTGGTGGTGGCAGCGGTGGTGAAAACATGGGGGGTGGCGGCGCTT
GCTCTACCGTGATCTGTAGTTGTCATCGTCGCGTTTGGAAATCAAGAAGA
TGCTGTCCGTTCGGCCTGTACATTACCCGTATGGAGTGTTCCAACTGTGG
AAAAGTGGCTTTTTCGTTAGACATTAAATAAACCTGTTGGAGATAACAAA
AAATTGGCCGATTCCGAGGCGGGCGTTGGCTCCCACCGCGTCTGAGATGC
ACGGTTGTCTTCGCCTGGTTTGCCATCTGTACACGTCTTTTTTCACGGAC
GACCCAAATTTTCGTTGCTGCTCTACGGCTACTGCTGCTGTAGCTGCTGC
TTAGGCTGCCGCTGCTGCTGCTACCGCTGCTGCTGATGCTACTAATGTTG
CTGCTGCAGATACGTCTTCAACTGCTGCTGCTATTGCTGCTGCTGCTGTT
TAAATGAACCGCGGGAAAAGGATAGCCATCTCGCGCCTCAAGGGTTTCAA
TTTTTTTCTTCGTCCCCGGGTGTTTTTCCTTCGGTTACAGGTTTGTTCGG
TTCGCTAACATGCTCATCAACGACAGCATCTATCACATGGACGAGGCGGT
CAAGTTCCTCTCTGCCATCAAGGCCGCACAGGTTAGTGCACGTGTGTGTG
AC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15343:28..1729+

>mRNA_Ecto-sp13_S_contig15343.4016.1 ID=mRNA_Ecto-sp13_S_contig15343.4016.1|Name=mRNA_Ecto-sp13_S_contig15343.4016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15343:28..1729+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTCTTCGCGGGGCACCCCGTGGCGTGCGACCACCTGGGCCCGCAGCTC
TTGGAATTTTTTGTTGACATCGAGCTTACCGGCAGCCACACCCAGTTCTA
TGACAAGTTCACCTTCCGCAGCCTCACAGCCCAGCTCCTGGAACACCTTT
GGACCCTCCGCCCTTACCGGGAAAGCATCATCCGCTACTCGCAGGACAGC
GCAAAGTTTGTTCGGTTCGCTAACATGCTCATCAACGACAGCATCTATCA
CATGGACGAGGCGGTCAAGTTCCTCTCTGCCATCAAGGCCGCACAGGTTA
GTGCACGTGTGTGTG
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