mRNA_Ecto-sp13_S_contig15331.4009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15331.4009.1
Unique NamemRNA_Ecto-sp13_S_contig15331.4009.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15331.4009.1 vs. uniprot
Match: A0A6H5JI95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI95_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 4.740e-61
Identity = 154/171 (90.06%), Postives = 156/171 (91.23%), Query Frame = -1 
Query:  130 VRTAADAAQMAELFRQRANAERQSARKLTEDVLDAKAFSERNNKAAMWRVETATRLKDKLIMANDLISGYINLRRGAVEEVKAAMAEETRAVARFKEAQAQAAALLE-ATGGVGGGPRAATIPATGSPSWNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMRRSESP 639
            VRTAADAAQMAELFRQRA AERQ+ARKLTEDVLDAKAFSERNNKAAMWRVETATRLKDKLIMANDLISGYIN+RRGAVEEVKAAMAEETRAVARFKEAQAQAAALLE ATG  GGG RAAT  ATGSPSWNN XXXXXXXXXXXXXXXXXXXXXXX       PMRRSESP
Sbjct: 1675 VRTAADAAQMAELFRQRAIAERQAARKLTEDVLDAKAFSERNNKAAMWRVETATRLKDKLIMANDLISGYINMRRGAVEEVKAAMAEETRAVARFKEAQAQAAALLEEATGRAGGGTRAATKTATGSPSWNNXXXXXXXXXXXXXXXXXXXXXXXXNGHDVSAPMRRSESP 1845
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15331.4009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI95_9PHAE4.740e-6190.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15331contigEcto-sp13_S_contig15331:1539..2178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size640
Hectar predicted targeting categoryother localisation
Exons1
Cds size639
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.1249712-CDS-Ecto-sp13_S_contig15331:1538..21771681462816.1249712-CDS-Ecto-sp13_S_contig15331:1538..2177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15331 1539..2177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15331.4009.1prot_Ecto-sp13_S_contig15331.4009.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15331 1539..2177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15331.4009.1

>prot_Ecto-sp13_S_contig15331.4009.1 ID=prot_Ecto-sp13_S_contig15331.4009.1|Name=mRNA_Ecto-sp13_S_contig15331.4009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
AGESRRIRAERRRRRAVGRTRTLPARGVVGGACCGQGGGQSRRRRLAAPH
RRGGVVPVPAARSAAGGGAGAAAVTAGATAAVVVPRRGARRRYRCRPRAT
PHAPGGLQEGRRLRLRLFEARHRPGLLCHRRFHLFDRAPPQVDVPADEVV
RHDKLVLEPGGRLDPPHRGLVVPLGEGLRVENVLGELTRGLALRVRPLPE
ELRHLGGVGRRPH
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mRNA from alignment at Ecto-sp13_S_contig15331:1539..2178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15331.4009.1 ID=mRNA_Ecto-sp13_S_contig15331.4009.1|Name=mRNA_Ecto-sp13_S_contig15331.4009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=640bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15331:1539..2178+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGCGAGAGTAGAAGAATACGAGCCGAACGAAGACGACGGCGGGCCGT
TGGCCGCACCCGCACCCTGCCTGCTCGCGGCGTTGTCGGCGGCGCCTGCT
GCGGCCAGGGCGGCGGTCAGAGCCGACGCCGGAGACTCGCTGCGCCTCAT
CGGCGCGGAGGCGTCGTGCCCGTTCCCGCTGCTCGAAGCGCTGCTGGTGG
TGGCGCCGGCGCTGCTGCCGTTACTGCTGGTGCTACTGCTGCTGTCGTTG
TTCCACGACGGGGAGCCCGTCGCCGGTATCGTTGCCGCCCTCGGGCCACC
CCCCACGCCCCCGGTGGCCTCCAGGAGGGCCGCCGCCTGCGCCTGCGCCT
CTTTGAAGCGCGCCACCGCCCTGGTCTCCTCTGCCATCGCCGCTTTCACC
TCTTCGACCGCGCCCCTCCTCAGGTTGATGTACCCGCTGATGAGGTCGTT
CGCCATGATAAGCTTGTCCTTGAGCCTGGTGGCCGTCTCGACCCGCCACA
TCGCGGCCTTGTTGTTCCGCTCGGAGAAGGCCTTCGCGTCGAGAACGTCC
TCGGTGAGCTTACGCGCGGACTGGCGCTCCGCGTTCGCCCTCTGCCGGAA
GAGCTCCGCCATCTGGGCGGCGTCGGCCGCCGTCCTCACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15331:1539..2178+

>mRNA_Ecto-sp13_S_contig15331.4009.1 ID=mRNA_Ecto-sp13_S_contig15331.4009.1|Name=mRNA_Ecto-sp13_S_contig15331.4009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15331:1539..2178+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGCGAGAGTAGAAGAATACGAGCCGAACGAAGACGACGGCGGGCCGT
TGGCCGCACCCGCACCCTGCCTGCTCGCGGCGTTGTCGGCGGCGCCTGCT
GCGGCCAGGGCGGCGGTCAGAGCCGACGCCGGAGACTCGCTGCGCCTCAT
CGGCGCGGAGGCGTCGTGCCCGTTCCCGCTGCTCGAAGCGCTGCTGGTGG
TGGCGCCGGCGCTGCTGCCGTTACTGCTGGTGCTACTGCTGCTGTCGTTG
TTCCACGACGGGGAGCCCGTCGCCGGTATCGTTGCCGCCCTCGGGCCACC
CCCCACGCCCCCGGTGGCCTCCAGGAGGGCCGCCGCCTGCGCCTGCGCCT
CTTTGAAGCGCGCCACCGCCCTGGTCTCCTCTGCCATCGCCGCTTTCACC
TCTTCGACCGCGCCCCTCCTCAGGTTGATGTACCCGCTGATGAGGTCGTT
CGCCATGATAAGCTTGTCCTTGAGCCTGGTGGCCGTCTCGACCCGCCACA
TCGCGGCCTTGTTGTTCCGCTCGGAGAAGGCCTTCGCGTCGAGAACGTCC
TCGGTGAGCTTACGCGCGGACTGGCGCTCCGCGTTCGCCCTCTGCCGGAA
GAGCTCCGCCATCTGGGCGGCGTCGGCCGCCGTCCTCAC
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