mRNA_Ecto-sp13_S_contig15330.4007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15330.4007.1
Unique NamemRNA_Ecto-sp13_S_contig15330.4007.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15330.4007.1 vs. uniprot
Match: A0A6H5K7D6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D6_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 7.030e-52
Identity = 99/127 (77.95%), Postives = 101/127 (79.53%), Query Frame = -2 
Query:    3 MQAAAAAWNNLGFGSRDLVGDNGGGGDGGREFRAGMPLPTSDHNGAGGWKGMFDDVTRQAGETAADARSSAVDAVGVMAVSTGGGDVQPLFARAAGTRKTLEFPAMPPAXXXXXXXDWDEAAAVAAF 383
            MQAAAAAW+NLG GS DLVGDNGGG    REFR GMPLP    NGAGGWKGMF DVTRQAGETAADARSSAVDA GVM +S GGGDVQPLFARAA  RKTLE PAMPP        DWDEAAAVAAF
Sbjct:    1 MQAAAAAWSNLGLGSGDLVGDNGGG----REFRVGMPLPAGGRNGAGGWKGMFGDVTRQAGETAADARSSAVDAAGVMTMSNGGGDVQPLFARAADNRKTLESPAMPPVVGGRGGGDWDEAAAVAAF 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15330.4007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7D6_9PHAE7.030e-5277.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15330contigEcto-sp13_S_contig15330:1790..2500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size711
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_002340.1
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.0448968-CDS-Ecto-sp13_S_contig15330:1789..24311681462816.0448968-CDS-Ecto-sp13_S_contig15330:1789..2431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15330 1790..2431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.056635-UTR-Ecto-sp13_S_contig15330:2431..25001681462816.056635-UTR-Ecto-sp13_S_contig15330:2431..2500Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15330 2432..2500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15330.4007.1prot_Ecto-sp13_S_contig15330.4007.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15330 1790..2431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15330.4007.1

>prot_Ecto-sp13_S_contig15330.4007.1 ID=prot_Ecto-sp13_S_contig15330.4007.1|Name=mRNA_Ecto-sp13_S_contig15330.4007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MNAATAAASSQSPPPPPPAAGGIAGNSKVFLVPAALAKRGWTSPPPVLTA
MTPTASTAEERASAAVSPAWRVTSSNMPFHPPAPLWSLVGSGIPARNSRP
PSPPPPLSPTRSREPNPRLFHAAAAACISEALSDLPGRPLLLLLLLPLGS
CGRWYTCCCCCGCSQTWLGALRSQAKPPPSAPSRSSKSPPPPPPLLPLLR
LPTGSYIGGRREG*
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mRNA from alignment at Ecto-sp13_S_contig15330:1790..2500+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15330.4007.1 ID=mRNA_Ecto-sp13_S_contig15330.4007.1|Name=mRNA_Ecto-sp13_S_contig15330.4007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15330:1790..2500+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGCCGCCACCGCCGCCGCCTCGTCCCAGTCGCCGCCACCACCCCC
GCCCGCCGCCGGCGGCATCGCCGGGAACTCCAAAGTCTTCCTAGTGCCTG
CAGCCCTCGCGAAGAGGGGCTGGACGTCACCGCCCCCGGTGCTCACGGCC
ATGACCCCTACGGCGTCCACTGCCGAGGAGCGGGCGTCCGCGGCGGTTTC
CCCCGCCTGGCGAGTGACGTCATCAAACATGCCTTTCCACCCACCGGCGC
CGTTGTGGTCACTGGTCGGTAGCGGCATCCCGGCTCGAAATTCTCGTCCG
CCATCGCCGCCGCCGCCGTTATCGCCAACAAGGTCGCGCGAACCGAATCC
GAGGTTGTTCCACGCCGCTGCCGCCGCTTGCATTTCTGAGGCTTTGTCCG
ATCTGCCAGGGCGGCCGTTGCTGCTGCTGTTGCTGCTGCCGTTGGGCTCG
TGCGGCCGTTGGTACACCTGCTGCTGCTGCTGCGGCTGCTCCCAGACTTG
GCTCGGGGCCTTGAGGTCCCAAGCCAAGCCCCCTCCTTCGGCGCCCTCCC
GGTCATCGAAGTCGCCGCCTCCGCCGCCGCCGCTGCTGCCGCTGCTCCGT
CTTCCCACTGGGTCGTACATCGGTGGAAGGAGGGAAGGGTAGTGGGTCCG
GGTGGTGACGGCGCCACGAGGAGGGGGGTGCTGCTGAGGGTGGTGCCGGT
CGTTGCCGCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15330:1790..2500+

>mRNA_Ecto-sp13_S_contig15330.4007.1 ID=mRNA_Ecto-sp13_S_contig15330.4007.1|Name=mRNA_Ecto-sp13_S_contig15330.4007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15330:1790..2500+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGCCGCCACCGCCGCCGCCTCGTCCCAGTCGCCGCCACCACCCCC
GCCCGCCGCCGGCGGCATCGCCGGGAACTCCAAAGTCTTCCTAGTGCCTG
CAGCCCTCGCGAAGAGGGGCTGGACGTCACCGCCCCCGGTGCTCACGGCC
ATGACCCCTACGGCGTCCACTGCCGAGGAGCGGGCGTCCGCGGCGGTTTC
CCCCGCCTGGCGAGTGACGTCATCAAACATGCCTTTCCACCCACCGGCGC
CGTTGTGGTCACTGGTCGGTAGCGGCATCCCGGCTCGAAATTCTCGTCCG
CCATCGCCGCCGCCGCCGTTATCGCCAACAAGGTCGCGCGAACCGAATCC
GAGGTTGTTCCACGCCGCTGCCGCCGCTTGCATTTCTGAGGCTTTGTCCG
ATCTGCCAGGGCGGCCGTTGCTGCTGCTGTTGCTGCTGCCGTTGGGCTCG
TGCGGCCGTTGGTACACCTGCTGCTGCTGCTGCGGCTGCTCCCAGACTTG
GCTCGGGGCCTTGAGGTCCCAAGCCAAGCCCCCTCCTTCGGCGCCCTCCC
GGTCATCGAAGTCGCCGCCTCCGCCGCCGCCGCTGCTGCCGCTGCTCCGT
CTTCCCACTGGGTCGTACATCGGTGGAAGGAGGGAAGGGTAG
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